RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	FOXI1	Q12951	378 aa		4.43	□□□□□ -1.7
SF3B3-209	ENST00000567635	SS18	Q15532	418 aa		4.43	□□□□□ -1.7
SF3B3-209	ENST00000567635	ERAS	Q7Z444	233 aa		4.43	□□□□□ -1.7
SF3B3-209	ENST00000567635	ATOH7	Q8N100	152 aa		4.43	□□□□□ -1.7
SF3B3-209	ENST00000567635	ORMDL3	Q8N138	153 aa		4.43	□□□□□ -1.7
SF3B3-209	ENST00000567635	C15orf56	Q8N910	161 aa		4.43	□□□□□ -1.7
SF3B3-209	ENST00000567635	NRAC	Q8N912	160 aa		4.43	□□□□□ -1.7
SF3B3-209	ENST00000567635	CHCHD1	Q96BP2	118 aa	Known RBP	4.43	□□□□□ -1.7
SF3B3-209	ENST00000567635	PRELID3A	Q96N28	172 aa		4.43	□□□□□ -1.7
SF3B3-209	ENST00000567635	KIR2DL4	Q99706	377 aa		4.43	□□□□□ -1.7
SF3B3-209	ENST00000567635	KRTAP4-6	Q9BYQ5	205 aa		4.43	□□□□□ -1.7
SF3B3-209	ENST00000567635	CDC42SE2	Q9NRR3	84 aa		4.43	□□□□□ -1.7
SF3B3-209	ENST00000567635	SPCS1	Q9Y6A9	102 aa		4.43	□□□□□ -1.7
SF3B3-209	ENST00000567635	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	4.43	□□□□□ -1.7
SF3B3-209	ENST00000567635	UBR4	Q5T4S7	5183 aa		4.43	□□□□□ -1.7
SF3B3-209	ENST00000567635	HERC1	Q15751	4861 aa		4.43	□□□□□ -1.7
SF3B3-209	ENST00000567635	KRTAP29-1	A8MX34	341 aa	Predicted RBP	4.42	□□□□□ -1.7
SF3B3-209	ENST00000567635		D6R8Y8	96 aa		4.42	□□□□□ -1.7
SF3B3-209	ENST00000567635	PANO1	I0J062	215 aa		4.42	□□□□□ -1.7
SF3B3-209	ENST00000567635	XCL1	P47992	114 aa		4.42	□□□□□ -1.7
SF3B3-209	ENST00000567635	KRTAP10-4	P60372	401 aa	Predicted RBP	4.42	□□□□□ -1.7
SF3B3-209	ENST00000567635	RPL24	P83731	157 aa	Known RBP	4.42	□□□□□ -1.7
SF3B3-209	ENST00000567635	CIRBP	Q14011	172 aa	Known RBP	4.42	□□□□□ -1.7
SF3B3-209	ENST00000567635	HIGD2B	Q4VC39	106 aa		4.42	□□□□□ -1.7
SF3B3-209	ENST00000567635	C20orf78	Q9BR46	151 aa		4.42	□□□□□ -1.7
SF3B3-209	ENST00000567635	CSDC2	Q9Y534	153 aa	Known RBP	4.42	□□□□□ -1.7
SF3B3-209	ENST00000567635	GVQW2	A0A096LPI5	108 aa	Predicted RBP	4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635	IGHV1-58	A0A0C4DH39	117 aa		4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635		A0A1W2PPM0	123 aa		4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635	SYS1-DBNDD2	H3BUS1	97 aa		4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635		H3BUT2	72 aa		4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635	TNFRSF6B	O95407	300 aa		4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635	COX8A	P10176	69 aa		4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635	RPL37A	P61513	92 aa	Known RBP	4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635	RPL32	P62910	135 aa	Known RBP	4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635	COX6A2	Q02221	97 aa		4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635	CD164L2	Q6UWJ8	174 aa		4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635	FAM19A2	Q8N3H0	131 aa		4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635	PRSS3P2	Q8NHM4	247 aa		4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635	URB1-AS1	Q96HZ7	61 aa		4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635	TIMM21	Q9BVV7	248 aa		4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635	MAP1LC3C	Q9BXW4	147 aa		4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635	VCX2	Q9H322	139 aa		4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635	HSPB8	Q9UJY1	196 aa		4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635	CYSLTR1	Q9Y271	337 aa		4.41	□□□□□ -1.7
SF3B3-209	ENST00000567635		A0A087WYN8	130 aa		4.4	□□□□□ -1.71
SF3B3-209	ENST00000567635	LOC389332	A0A1B0GUA5	103 aa		4.4	□□□□□ -1.71
SF3B3-209	ENST00000567635		A4D1N5	150 aa		4.4	□□□□□ -1.71
SF3B3-209	ENST00000567635	LINC01546	A6NGU7	62 aa		4.4	□□□□□ -1.71
SF3B3-209	ENST00000567635		F8W1H4	67 aa		4.4	□□□□□ -1.71
SF3B3-209	ENST00000567635	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	4.4	□□□□□ -1.71
SF3B3-209	ENST00000567635	NPY	P01303	97 aa		4.4	□□□□□ -1.71
SF3B3-209	ENST00000567635	CHTF8	P0CG12	524 aa		4.4	□□□□□ -1.71
SF3B3-209	ENST00000567635	IFI27	P40305	119 aa	Predicted RBP	4.4	□□□□□ -1.71
SF3B3-209	ENST00000567635	SPACA4	Q8TDM5	124 aa		4.4	□□□□□ -1.71
SF3B3-209	ENST00000567635	MAP1LC3A	Q9H492	121 aa		4.4	□□□□□ -1.71
SF3B3-209	ENST00000567635	UBE2D4	Q9Y2X8	147 aa		4.4	□□□□□ -1.71
SF3B3-209	ENST00000567635	ZNF561-AS1	K7EIQ3	104 aa		4.39	□□□□□ -1.71
SF3B3-209	ENST00000567635	LEPROTL1	O95214	131 aa		4.39	□□□□□ -1.71
SF3B3-209	ENST00000567635	OXT	P01178	125 aa		4.39	□□□□□ -1.71
SF3B3-209	ENST00000567635	MAL	P21145	153 aa		4.39	□□□□□ -1.71
SF3B3-209	ENST00000567635		Q8N8P6	123 aa		4.39	□□□□□ -1.71
SF3B3-209	ENST00000567635	SMIM2	Q9BVW6	85 aa		4.39	□□□□□ -1.71
SF3B3-209	ENST00000567635	NXT2	Q9NPJ8	142 aa	Known RBP	4.39	□□□□□ -1.71
SF3B3-209	ENST00000567635	PLAC8	Q9NZF1	115 aa		4.39	□□□□□ -1.71
SF3B3-209	ENST00000567635	ERG28	Q9UKR5	140 aa		4.39	□□□□□ -1.71
SF3B3-209	ENST00000567635	TRAV13-1	A0A0B4J241	112 aa		4.38	□□□□□ -1.71
SF3B3-209	ENST00000567635	COX7A2L	O14548	114 aa		4.38	□□□□□ -1.71
SF3B3-209	ENST00000567635	SMIM13	P0DJ93	91 aa		4.38	□□□□□ -1.71
SF3B3-209	ENST00000567635	RPL39	P62891	51 aa	Known RBP	4.38	□□□□□ -1.71
SF3B3-209	ENST00000567635	SYCN	Q0VAF6	134 aa		4.38	□□□□□ -1.71
SF3B3-209	ENST00000567635	RNASE13	Q5GAN3	156 aa	Known RBP	4.38	□□□□□ -1.71
SF3B3-209	ENST00000567635	C2orf91	Q6ZV80	131 aa		4.38	□□□□□ -1.71
SF3B3-209	ENST00000567635	LINC00526	Q96FQ7	95 aa		4.38	□□□□□ -1.71
SF3B3-209	ENST00000567635	CARD19	Q96LW7	228 aa		4.38	□□□□□ -1.71
SF3B3-209	ENST00000567635	LINC00474	Q9P2X8	69 aa		4.38	□□□□□ -1.71
SF3B3-209	ENST00000567635	PKIG	Q9Y2B9	76 aa		4.38	□□□□□ -1.71
SF3B3-209	ENST00000567635		A0A096LNI7	61 aa		4.37	□□□□□ -1.71
SF3B3-209	ENST00000567635	IGKV2-24	A0A0C4DH68	120 aa		4.37	□□□□□ -1.71
SF3B3-209	ENST00000567635	HERV-K104	P63124	156 aa		4.37	□□□□□ -1.71
SF3B3-209	ENST00000567635	MRPS36	P82909	103 aa	Known RBP	4.37	□□□□□ -1.71
SF3B3-209	ENST00000567635	LINC01545	Q5VT33	79 aa		4.37	□□□□□ -1.71
SF3B3-209	ENST00000567635		Q6ZUT4	128 aa		4.37	□□□□□ -1.71
SF3B3-209	ENST00000567635	C5orf38	Q86SI9	138 aa		4.37	□□□□□ -1.71
SF3B3-209	ENST00000567635	C7orf33	Q8WU49	177 aa		4.37	□□□□□ -1.71
SF3B3-209	ENST00000567635	FAM104A	Q969W3	186 aa		4.37	□□□□□ -1.71
SF3B3-209	ENST00000567635	SPANXB1	Q9NS25	103 aa	Predicted RBP	4.37	□□□□□ -1.71
SF3B3-209	ENST00000567635	SS18L2	Q9UHA2	77 aa		4.37	□□□□□ -1.71
SF3B3-209	ENST00000567635	FAT1	Q14517	4588 aa		4.37	□□□□□ -1.71
SF3B3-209	ENST00000567635	IGLV4-69	A0A075B6H9	119 aa		4.36	□□□□□ -1.71
SF3B3-209	ENST00000567635		K7EMI3	77 aa		4.36	□□□□□ -1.71
SF3B3-209	ENST00000567635	APOM	O95445	188 aa		4.36	□□□□□ -1.71
SF3B3-209	ENST00000567635	C2orf48	Q96LS8	159 aa		4.36	□□□□□ -1.71
SF3B3-209	ENST00000567635	OPRPN	Q99935	248 aa	Predicted RBP	4.36	□□□□□ -1.71
SF3B3-209	ENST00000567635	ANAPC13	Q9BS18	74 aa		4.36	□□□□□ -1.71
SF3B3-209	ENST00000567635	DNAH8	Q96JB1	4490 aa		4.35	□□□□□ -1.71
SF3B3-209	ENST00000567635		A0A096LNJ9	63 aa		4.35	□□□□□ -1.71
SF3B3-209	ENST00000567635	LOC107984640	A0A0U1RRK4	108 aa		4.35	□□□□□ -1.71
SF3B3-209	ENST00000567635	HBD	P02042	147 aa		4.35	□□□□□ -1.71
SF3B3-209	ENST00000567635	SPINK8	P0C7L1	97 aa		4.35	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 125.3 ms