RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PACRGQ96M98 296 aaPredicted RBP12.43□□□□□ -0.42
CLN3-225ENST00000566824 TRAV12-1A0A0B4J245 112 aa12.42□□□□□ -0.42
CLN3-225ENST00000566824 NDUFA1O15239 70 aa12.42□□□□□ -0.42
CLN3-225ENST00000566824 MRPL35Q9NZE8 188 aaKnown RBP12.42□□□□□ -0.42
CLN3-225ENST00000566824 H0Y8G0 127 aa12.41□□□□□ -0.42
CLN3-225ENST00000566824 Q8IZM0 81 aa12.41□□□□□ -0.42
CLN3-225ENST00000566824 RNF151Q2KHN1 245 aa12.4□□□□□ -0.42
CLN3-225ENST00000566824 C9orf116Q5BN46 136 aaPredicted RBP12.4□□□□□ -0.42
CLN3-225ENST00000566824 VPS13BQ7Z7G8 4022 aa12.4□□□□□ -0.42
CLN3-225ENST00000566824 F8WDY8 70 aa12.39□□□□□ -0.43
CLN3-225ENST00000566824 PRSS2P07478 247 aa12.39□□□□□ -0.43
CLN3-225ENST00000566824 ODF1Q14990 250 aa12.39□□□□□ -0.43
CLN3-225ENST00000566824 MAJINQ3KP22 176 aa12.39□□□□□ -0.43
CLN3-225ENST00000566824 C6orf226Q5I0X4 101 aa12.39□□□□□ -0.43
CLN3-225ENST00000566824 A0A087WYN8 130 aa12.38□□□□□ -0.43
CLN3-225ENST00000566824 LOC107984640A0A0U1RRK4 108 aa12.38□□□□□ -0.43
CLN3-225ENST00000566824 GAGE2BQ13066 116 aa12.38□□□□□ -0.43
CLN3-225ENST00000566824 COA6Q5JTJ3 125 aaKnown RBP12.38□□□□□ -0.43
CLN3-225ENST00000566824 COX7B2Q8TF08 81 aa12.38□□□□□ -0.43
CLN3-225ENST00000566824 IGLV5-39A0A0G2JS06 123 aa12.37□□□□□ -0.43
CLN3-225ENST00000566824 F8VRH5 84 aa12.37□□□□□ -0.43
CLN3-225ENST00000566824 H3BRM9 83 aa12.37□□□□□ -0.43
CLN3-225ENST00000566824 PTTG1IPP53801 180 aa12.37□□□□□ -0.43
CLN3-225ENST00000566824 TMEM170BQ5T4T1 132 aa12.37□□□□□ -0.43
CLN3-225ENST00000566824 HSPB8Q9UJY1 196 aa12.37□□□□□ -0.43
CLN3-225ENST00000566824 CKS1BP61024 79 aa12.37□□□□□ -0.43
CLN3-225ENST00000566824 DPH3Q96FX2 82 aa12.37□□□□□ -0.43
CLN3-225ENST00000566824 PMCHL2Q9BQD1 86 aa12.37□□□□□ -0.43
CLN3-225ENST00000566824 SRRM2Q9UQ35 2752 aaKnown RBP12.36□□□□□ -0.43
CLN3-225ENST00000566824 PCLOQ9Y6V0 5065 aa12.36□□□□□ -0.43
CLN3-225ENST00000566824 RPL18AQ02543 176 aaKnown RBP12.36□□□□□ -0.43
CLN3-225ENST00000566824 Q5VSD8 79 aa12.36□□□□□ -0.43
CLN3-225ENST00000566824 Q6ZRP5 223 aa12.36□□□□□ -0.43
CLN3-225ENST00000566824 LINC00528Q8N1L1 170 aa12.36□□□□□ -0.43
CLN3-225ENST00000566824 TRBV30A0A0K0K1B3 111 aa12.35□□□□□ -0.43
CLN3-225ENST00000566824 STPG4Q8N801 248 aa12.35□□□□□ -0.43
CLN3-225ENST00000566824 PLAC8Q9NZF1 115 aa12.35□□□□□ -0.43
CLN3-225ENST00000566824 TMEM223A0PJW6 202 aa12.33□□□□□ -0.44
CLN3-225ENST00000566824 EPM2AB3EWF7 344 aa12.33□□□□□ -0.44
CLN3-225ENST00000566824 TLX1NBP0CAT3 122 aa12.33□□□□□ -0.44
CLN3-225ENST00000566824 A0A1W2PNN7 141 aa12.32□□□□□ -0.44
CLN3-225ENST00000566824 GAGE2EQ4V326 116 aa12.31□□□□□ -0.44
CLN3-225ENST00000566824 GAGE2DQ9UEU5 116 aa12.31□□□□□ -0.44
CLN3-225ENST00000566824 PKIGQ9Y2B9 76 aa12.31□□□□□ -0.44
CLN3-225ENST00000566824 MAP1LC3CQ9BXW4 147 aa12.3□□□□□ -0.44
CLN3-225ENST00000566824 FAM168BA1KXE4 195 aa12.29□□□□□ -0.44
CLN3-225ENST00000566824 NDUFC2-KCTD14E9PQ53 114 aa12.29□□□□□ -0.44
CLN3-225ENST00000566824 FAM229AH3BQW9 127 aa12.29□□□□□ -0.44
CLN3-225ENST00000566824 CXCL5P42830 114 aa12.29□□□□□ -0.44
CLN3-225ENST00000566824 KRTAP10-4P60372 401 aaPredicted RBP12.29□□□□□ -0.44
CLN3-225ENST00000566824 LINC00474Q9P2X8 69 aa12.29□□□□□ -0.44
CLN3-225ENST00000566824 SYS1-DBNDD2H3BUS1 97 aa12.28□□□□□ -0.44
CLN3-225ENST00000566824 DPM2O94777 84 aa12.27□□□□□ -0.45
CLN3-225ENST00000566824 C9orf129Q5T035 196 aaKnown RBP12.27□□□□□ -0.45
CLN3-225ENST00000566824 KRTAP7-1Q8IUC3 87 aa12.27□□□□□ -0.45
CLN3-225ENST00000566824 C3orf79P0CE67 100 aa12.26□□□□□ -0.45
CLN3-225ENST00000566824 PLNP26678 52 aa12.25□□□□□ -0.45
CLN3-225ENST00000566824 IGKCP01834 107 aa12.24□□□□□ -0.45
CLN3-225ENST00000566824 TSPEAR-AS2P59090 65 aa12.24□□□□□ -0.45
CLN3-225ENST00000566824 ZNF625Q96I27 306 aaPredicted RBP12.24□□□□□ -0.45
CLN3-225ENST00000566824 HIST3H2BBQ8N257 126 aa12.23□□□□□ -0.45
CLN3-225ENST00000566824 XAGE1AQ9HD64 81 aa12.23□□□□□ -0.45
CLN3-225ENST00000566824 KRTDAPP60985 99 aa12.22□□□□□ -0.45
CLN3-225ENST00000566824 LINC01545Q5VT33 79 aa12.22□□□□□ -0.45
CLN3-225ENST00000566824 PET117Q6UWS5 81 aa12.21□□□□□ -0.45
CLN3-225ENST00000566824 FAM19A5Q7Z5A7 132 aaPredicted RBP12.21□□□□□ -0.45
CLN3-225ENST00000566824 PFN2P35080 140 aa12.2□□□□□ -0.46
CLN3-225ENST00000566824 RPL37AP61513 92 aaKnown RBP12.2□□□□□ -0.46
CLN3-225ENST00000566824 PHF5AQ7RTV0 110 aaKnown RBP12.2□□□□□ -0.46
CLN3-225ENST00000566824 PKHD1L1Q86WI1 4243 aa12.2□□□□□ -0.46
CLN3-225ENST00000566824 PLA2G1BP04054 148 aaKnown RBP12.19□□□□□ -0.46
CLN3-225ENST00000566824 SERTAD4-AS1Q5TG53 156 aa12.19□□□□□ -0.46
CLN3-225ENST00000566824 ERG28Q9UKR5 140 aa12.19□□□□□ -0.46
CLN3-225ENST00000566824 FLG2Q5D862 2391 aaPredicted RBP12.19□□□□□ -0.46
CLN3-225ENST00000566824 HIST1H2BLQ99880 126 aa12.18□□□□□ -0.46
CLN3-225ENST00000566824 LEPROTO15243 131 aa12.17□□□□□ -0.46
CLN3-225ENST00000566824 HNRNPA3P51991 378 aaKnown RBP12.17□□□□□ -0.46
CLN3-225ENST00000566824 KRTAP11-1Q8IUC1 163 aa12.17□□□□□ -0.46
CLN3-225ENST00000566824 INAFM2P0DMQ5 153 aa12.16□□□□□ -0.46
CLN3-225ENST00000566824 SNRPEP62304 92 aaKnown RBP12.16□□□□□ -0.46
CLN3-225ENST00000566824 C7orf33Q8WU49 177 aa12.15□□□□□ -0.46
CLN3-225ENST00000566824 NDUFA12Q9UI09 145 aa12.15□□□□□ -0.46
CLN3-225ENST00000566824 A0A0U1RRA0 63 aa12.14□□□□□ -0.47
CLN3-225ENST00000566824 S100A6P06703 90 aa12.14□□□□□ -0.47
CLN3-225ENST00000566824 J3QQQ9 107 aa12.13□□□□□ -0.47
CLN3-225ENST00000566824 HERVK_113P61574 105 aa12.13□□□□□ -0.47
CLN3-225ENST00000566824 PLEKHB2Q96CS7 222 aa12.13□□□□□ -0.47
CLN3-225ENST00000566824 M0QXV9 152 aa12.12□□□□□ -0.47
CLN3-225ENST00000566824 SND1-IT1Q9HBX3 110 aa12.12□□□□□ -0.47
CLN3-225ENST00000566824 C5orf52A6NGY3 159 aa12.11□□□□□ -0.47
CLN3-225ENST00000566824 E9PLD3 99 aa12.11□□□□□ -0.47
CLN3-225ENST00000566824 SMIM13P0DJ93 91 aa12.11□□□□□ -0.47
CLN3-225ENST00000566824 S100A2P29034 98 aa12.11□□□□□ -0.47
CLN3-225ENST00000566824 PRR3P79522 188 aaKnown RBP12.11□□□□□ -0.47
CLN3-225ENST00000566824 SFTA2Q6UW10 78 aa12.11□□□□□ -0.47
CLN3-225ENST00000566824 ATOH7Q8N100 152 aa12.11□□□□□ -0.47
CLN3-225ENST00000566824 Q8NDZ9 215 aa12.11□□□□□ -0.47
CLN3-225ENST00000566824 LINC00158P58513 81 aa12.11□□□□□ -0.47
CLN3-225ENST00000566824 COX17Q14061 63 aa12.11□□□□□ -0.47
CLN3-225ENST00000566824 MYCBP2O75592 4640 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms