RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 Q6ZSA8 131 aa11.07□□□□□ -0.64
CLN3-217ENST00000565354 H0Y8G0 127 aa11.06□□□□□ -0.64
CLN3-217ENST00000565354 IGLC3P0DOY3 106 aa11.06□□□□□ -0.64
CLN3-217ENST00000565354 HSPB8Q9UJY1 196 aa11.06□□□□□ -0.64
CLN3-217ENST00000565354 CHTOPQ9Y3Y2 248 aaKnown RBP11.06□□□□□ -0.64
CLN3-217ENST00000565354 NUPR1O60356 82 aa11.05□□□□□ -0.64
CLN3-217ENST00000565354 FABP4P15090 132 aa11.05□□□□□ -0.64
CLN3-217ENST00000565354 C6orf226Q5I0X4 101 aa11.05□□□□□ -0.64
CLN3-217ENST00000565354 LRP1Q07954 4544 aaKnown RBP11.05□□□□□ -0.64
CLN3-217ENST00000565354 IGLV5-45A0A087WSX0 123 aa11.04□□□□□ -0.64
CLN3-217ENST00000565354 TRAV12-1A0A0B4J245 112 aa11.04□□□□□ -0.64
CLN3-217ENST00000565354 IGKV2-24A0A0C4DH68 120 aa11.04□□□□□ -0.64
CLN3-217ENST00000565354 LOC107984640A0A0U1RRK4 108 aa11.04□□□□□ -0.64
CLN3-217ENST00000565354 SPINK8P0C7L1 97 aa11.04□□□□□ -0.64
CLN3-217ENST00000565354 CKS1BP61024 79 aa11.04□□□□□ -0.64
CLN3-217ENST00000565354 SCXQ7RTU7 201 aa11.04□□□□□ -0.64
CLN3-217ENST00000565354 KIAA0087Q14695 138 aa11.03□□□□□ -0.64
CLN3-217ENST00000565354 TMEM170BQ5T4T1 132 aa11.03□□□□□ -0.64
CLN3-217ENST00000565354 Q8IZM0 81 aa11.03□□□□□ -0.64
CLN3-217ENST00000565354 MRPL35Q9NZE8 188 aaKnown RBP11.03□□□□□ -0.64
CLN3-217ENST00000565354 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.03□□□□□ -0.64
CLN3-217ENST00000565354 SMIM1B2RUZ4 78 aa11.02□□□□□ -0.65
CLN3-217ENST00000565354 CHTF8P0CG12 524 aa11.02□□□□□ -0.65
CLN3-217ENST00000565354 RNF151Q2KHN1 245 aa11.02□□□□□ -0.65
CLN3-217ENST00000565354 UNQ6190/PRO20217Q6UXQ8 127 aa11.02□□□□□ -0.65
CLN3-217ENST00000565354 LINC00528Q8N1L1 170 aa11.02□□□□□ -0.65
CLN3-217ENST00000565354 C11orf86A6NJI1 115 aa11.01□□□□□ -0.65
CLN3-217ENST00000565354 ZNF22P17026 224 aaPredicted RBP11.01□□□□□ -0.65
CLN3-217ENST00000565354 RPL18AQ02543 176 aaKnown RBP11.01□□□□□ -0.65
CLN3-217ENST00000565354 GAGE2BQ13066 116 aa11.01□□□□□ -0.65
CLN3-217ENST00000565354 MAJINQ3KP22 176 aa11.01□□□□□ -0.65
CLN3-217ENST00000565354 C2orf82Q6UX34 121 aa11.01□□□□□ -0.65
CLN3-217ENST00000565354 CIRBP-AS1Q8TBR5 109 aa11.01□□□□□ -0.65
CLN3-217ENST00000565354 COX7B2Q8TF08 81 aa11.01□□□□□ -0.65
CLN3-217ENST00000565354 LINC00474Q9P2X8 69 aa11.01□□□□□ -0.65
CLN3-217ENST00000565354 F8VRH5 84 aa11□□□□□ -0.65
CLN3-217ENST00000565354 CXCL5P42830 114 aa11□□□□□ -0.65
CLN3-217ENST00000565354 C10orf25Q5T742 122 aa11□□□□□ -0.65
CLN3-217ENST00000565354 A0A096LNI7 61 aa10.99□□□□□ -0.65
CLN3-217ENST00000565354 TRBV30A0A0K0K1B3 111 aa10.99□□□□□ -0.65
CLN3-217ENST00000565354 PANO1I0J062 215 aa10.99□□□□□ -0.65
CLN3-217ENST00000565354 SPACA4Q8TDM5 124 aa10.99□□□□□ -0.65
CLN3-217ENST00000565354 MAP1LC3CQ9BXW4 147 aa10.99□□□□□ -0.65
CLN3-217ENST00000565354 C6orf48Q9UBA6 75 aa10.99□□□□□ -0.65
CLN3-217ENST00000565354 PLA2G2DQ9UNK4 145 aa10.99□□□□□ -0.65
CLN3-217ENST00000565354 FAT3Q8TDW7 4589 aa10.97□□□□□ -0.65
CLN3-217ENST00000565354 A0A087WYN8 130 aa10.96□□□□□ -0.65
CLN3-217ENST00000565354 PTTG1IPP53801 180 aa10.96□□□□□ -0.65
CLN3-217ENST00000565354 CIRBPQ14011 172 aaKnown RBP10.96□□□□□ -0.65
CLN3-217ENST00000565354 ODF1Q14990 250 aa10.96□□□□□ -0.65
CLN3-217ENST00000565354 STPG4Q8N801 248 aa10.96□□□□□ -0.65
CLN3-217ENST00000565354 OXTP01178 125 aa10.95□□□□□ -0.66
CLN3-217ENST00000565354 COA6Q5JTJ3 125 aaKnown RBP10.95□□□□□ -0.66
CLN3-217ENST00000565354 IGLV5-39A0A0G2JS06 123 aa10.93□□□□□ -0.66
CLN3-217ENST00000565354 TLX1NBP0CAT3 122 aa10.93□□□□□ -0.66
CLN3-217ENST00000565354 PLNP26678 52 aa10.93□□□□□ -0.66
CLN3-217ENST00000565354 GAGE2EQ4V326 116 aa10.93□□□□□ -0.66
CLN3-217ENST00000565354 C9orf116Q5BN46 136 aaPredicted RBP10.93□□□□□ -0.66
CLN3-217ENST00000565354 GAGE2DQ9UEU5 116 aa10.93□□□□□ -0.66
CLN3-217ENST00000565354 TMEM223A0PJW6 202 aa10.92□□□□□ -0.66
CLN3-217ENST00000565354 DPM2O94777 84 aa10.92□□□□□ -0.66
CLN3-217ENST00000565354 PMCHL2Q9BQD1 86 aa10.92□□□□□ -0.66
CLN3-217ENST00000565354 NDUFC2-KCTD14E9PQ53 114 aa10.91□□□□□ -0.66
CLN3-217ENST00000565354 S100A6P06703 90 aa10.91□□□□□ -0.66
CLN3-217ENST00000565354 KRTAP10-4P60372 401 aaPredicted RBP10.91□□□□□ -0.66
CLN3-217ENST00000565354 Q6ZRP5 223 aa10.91□□□□□ -0.66
CLN3-217ENST00000565354 PLAC8Q9NZF1 115 aa10.91□□□□□ -0.66
CLN3-217ENST00000565354 SYS1-DBNDD2H3BUS1 97 aa10.9□□□□□ -0.66
CLN3-217ENST00000565354 IGKCP01834 107 aa10.9□□□□□ -0.66
CLN3-217ENST00000565354 HERVK_113P61574 105 aa10.89□□□□□ -0.67
CLN3-217ENST00000565354 C7orf33Q8WU49 177 aa10.89□□□□□ -0.67
CLN3-217ENST00000565354 PKHD1L1Q86WI1 4243 aa10.89□□□□□ -0.67
CLN3-217ENST00000565354 SFTA2Q6UW10 78 aa10.88□□□□□ -0.67
CLN3-217ENST00000565354 S100A2P29034 98 aa10.87□□□□□ -0.67
CLN3-217ENST00000565354 KRTDAPP60985 99 aa10.87□□□□□ -0.67
CLN3-217ENST00000565354 PET117Q6UWS5 81 aa10.87□□□□□ -0.67
CLN3-217ENST00000565354 RPL37AP61513 92 aaKnown RBP10.86□□□□□ -0.67
CLN3-217ENST00000565354 C3orf79P0CE67 100 aa10.85□□□□□ -0.67
CLN3-217ENST00000565354 ZNF625Q96I27 306 aaPredicted RBP10.85□□□□□ -0.67
CLN3-217ENST00000565354 A0A1W2PNN7 141 aa10.84□□□□□ -0.67
CLN3-217ENST00000565354 C20orf202A1L168 122 aa10.84□□□□□ -0.67
CLN3-217ENST00000565354 PFN2P35080 140 aa10.84□□□□□ -0.67
CLN3-217ENST00000565354 FAM19A5Q7Z5A7 132 aaPredicted RBP10.84□□□□□ -0.67
CLN3-217ENST00000565354 LINC01545Q5VT33 79 aa10.83□□□□□ -0.68
CLN3-217ENST00000565354 PLEKHB2Q96CS7 222 aa10.83□□□□□ -0.68
CLN3-217ENST00000565354 XAGE1AQ9HD64 81 aa10.83□□□□□ -0.68
CLN3-217ENST00000565354 ERG28Q9UKR5 140 aa10.83□□□□□ -0.68
CLN3-217ENST00000565354 LEPROTO15243 131 aa10.82□□□□□ -0.68
CLN3-217ENST00000565354 HIST3H2BBQ8N257 126 aa10.82□□□□□ -0.68
CLN3-217ENST00000565354 FAM168BA1KXE4 195 aa10.81□□□□□ -0.68
CLN3-217ENST00000565354 C9orf129Q5T035 196 aaKnown RBP10.81□□□□□ -0.68
CLN3-217ENST00000565354 NDUFA12Q9UI09 145 aa10.81□□□□□ -0.68
CLN3-217ENST00000565354 MYMXA0A1B0GTQ4 84 aa10.8□□□□□ -0.68
CLN3-217ENST00000565354 LGALS3P17931 250 aaKnown RBP10.8□□□□□ -0.68
CLN3-217ENST00000565354 HERV-K104P63124 156 aa10.8□□□□□ -0.68
CLN3-217ENST00000565354 COX17Q14061 63 aa10.8□□□□□ -0.68
CLN3-217ENST00000565354 MEIG1Q5JSS6 88 aa10.8□□□□□ -0.68
CLN3-217ENST00000565354 LINC00158P58513 81 aa10.79□□□□□ -0.68
CLN3-217ENST00000565354 J3QQQ9 107 aa10.78□□□□□ -0.68
CLN3-217ENST00000565354 PHF5AQ7RTV0 110 aaKnown RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms