RNA–Protein interactions for RNA: ENST00000564387.5

USB1-209, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-209ENST00000564387 INAFM2P0DMQ5 153 aa10.89□□□□□ -0.67
USB1-209ENST00000564387 PACRGQ96M98 296 aaPredicted RBP10.89□□□□□ -0.67
USB1-209ENST00000564387 SERF1AO75920 110 aa10.88□□□□□ -0.67
USB1-209ENST00000564387 PRSS2P07478 247 aa10.88□□□□□ -0.67
USB1-209ENST00000564387 C6orf226Q5I0X4 101 aa10.88□□□□□ -0.67
USB1-209ENST00000564387 IFI27L1Q96BM0 104 aa10.88□□□□□ -0.67
USB1-209ENST00000564387 TRAV12-1A0A0B4J245 112 aa10.87□□□□□ -0.67
USB1-209ENST00000564387 NDUFA6P56556 154 aa10.87□□□□□ -0.67
USB1-209ENST00000564387 GAGE2BQ13066 116 aa10.87□□□□□ -0.67
USB1-209ENST00000564387 Q6ZRP5 223 aa10.87□□□□□ -0.67
USB1-209ENST00000564387 FAM19A2Q8N3H0 131 aa10.87□□□□□ -0.67
USB1-209ENST00000564387 IGLV5-39A0A0G2JS06 123 aa10.86□□□□□ -0.67
USB1-209ENST00000564387 NUPR1O60356 82 aa10.86□□□□□ -0.67
USB1-209ENST00000564387 ZNF22P17026 224 aaPredicted RBP10.86□□□□□ -0.67
USB1-209ENST00000564387 CXCL5P42830 114 aa10.86□□□□□ -0.67
USB1-209ENST00000564387 CKS1BP61024 79 aa10.86□□□□□ -0.67
USB1-209ENST00000564387 TOMM7Q9P0U1 55 aa10.86□□□□□ -0.67
USB1-209ENST00000564387 H3BRM9 83 aa10.85□□□□□ -0.67
USB1-209ENST00000564387 RPL37AP61513 92 aaKnown RBP10.85□□□□□ -0.67
USB1-209ENST00000564387 A0A1W2PNN7 141 aa10.84□□□□□ -0.67
USB1-209ENST00000564387 C11orf86A6NJI1 115 aa10.84□□□□□ -0.67
USB1-209ENST00000564387 NDUFC2-KCTD14E9PQ53 114 aa10.84□□□□□ -0.67
USB1-209ENST00000564387 F8VRH5 84 aa10.84□□□□□ -0.67
USB1-209ENST00000564387 SPINK8P0C7L1 97 aa10.84□□□□□ -0.67
USB1-209ENST00000564387 RPL18AQ02543 176 aaKnown RBP10.84□□□□□ -0.67
USB1-209ENST00000564387 COX7B2Q8TF08 81 aa10.84□□□□□ -0.67
USB1-209ENST00000564387 HIST1H2BKO60814 126 aa10.83□□□□□ -0.68
USB1-209ENST00000564387 HIST1H2BJP06899 126 aa10.83□□□□□ -0.68
USB1-209ENST00000564387 HIST1H2BOP23527 126 aa10.83□□□□□ -0.68
USB1-209ENST00000564387 HIST1H2BBP33778 126 aa10.83□□□□□ -0.68
USB1-209ENST00000564387 HIST1H2BDP58876 126 aa10.83□□□□□ -0.68
USB1-209ENST00000564387 HIST1H2BCP62807 126 aa10.83□□□□□ -0.68
USB1-209ENST00000564387 HIST2H2BEQ16778 126 aa10.83□□□□□ -0.68
USB1-209ENST00000564387 C9orf116Q5BN46 136 aaPredicted RBP10.83□□□□□ -0.68
USB1-209ENST00000564387 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.83□□□□□ -0.68
USB1-209ENST00000564387 HIST1H2BHQ93079 126 aa10.83□□□□□ -0.68
USB1-209ENST00000564387 HIST1H2BNQ99877 126 aa10.83□□□□□ -0.68
USB1-209ENST00000564387 HIST1H2BMQ99879 126 aa10.83□□□□□ -0.68
USB1-209ENST00000564387 CHTOPQ9Y3Y2 248 aaKnown RBP10.83□□□□□ -0.68
USB1-209ENST00000564387 MYCBP2O75592 4640 aa10.82□□□□□ -0.68
USB1-209ENST00000564387 LEPROTL1O95214 131 aa10.81□□□□□ -0.68
USB1-209ENST00000564387 C7orf33Q8WU49 177 aa10.81□□□□□ -0.68
USB1-209ENST00000564387 FLG2Q5D862 2391 aaPredicted RBP10.8□□□□□ -0.68
USB1-209ENST00000564387 S100A1P23297 94 aa10.79□□□□□ -0.68
USB1-209ENST00000564387 KRTAP7-1Q8IUC3 87 aa10.79□□□□□ -0.68
USB1-209ENST00000564387 ODF1Q14990 250 aa10.78□□□□□ -0.68
USB1-209ENST00000564387 GAGE2EQ4V326 116 aa10.78□□□□□ -0.68
USB1-209ENST00000564387 C9orf129Q5T035 196 aaKnown RBP10.78□□□□□ -0.68
USB1-209ENST00000564387 GAGE2DQ9UEU5 116 aa10.78□□□□□ -0.68
USB1-209ENST00000564387 HNRNPA3P51991 378 aaKnown RBP10.77□□□□□ -0.69
USB1-209ENST00000564387 TMEM170BQ5T4T1 132 aa10.77□□□□□ -0.69
USB1-209ENST00000564387 HSPB8Q9UJY1 196 aa10.77□□□□□ -0.69
USB1-209ENST00000564387 TMEM223A0PJW6 202 aa10.76□□□□□ -0.69
USB1-209ENST00000564387 FAM168BA1KXE4 195 aa10.76□□□□□ -0.69
USB1-209ENST00000564387 COA6Q5JTJ3 125 aaKnown RBP10.76□□□□□ -0.69
USB1-209ENST00000564387 PRR3P79522 188 aaKnown RBP10.75□□□□□ -0.69
USB1-209ENST00000564387 PKHD1L1Q86WI1 4243 aa10.75□□□□□ -0.69
USB1-209ENST00000564387 FABP4P15090 132 aa10.74□□□□□ -0.69
USB1-209ENST00000564387 ZNF625Q96I27 306 aaPredicted RBP10.74□□□□□ -0.69
USB1-209ENST00000564387 ATP6V1G1O75348 118 aa10.73□□□□□ -0.69
USB1-209ENST00000564387 SFTA2Q6UW10 78 aa10.73□□□□□ -0.69
USB1-209ENST00000564387 PHF5AQ7RTV0 110 aaKnown RBP10.72□□□□□ -0.69
USB1-209ENST00000564387 KRTAP29-1A8MX34 341 aaPredicted RBP10.71□□□□□ -0.69
USB1-209ENST00000564387 PLNP26678 52 aa10.7□□□□□ -0.7
USB1-209ENST00000564387 COX17Q14061 63 aa10.7□□□□□ -0.7
USB1-209ENST00000564387 XAGE1AQ9HD64 81 aa10.7□□□□□ -0.7
USB1-209ENST00000564387 PLA2G2DQ9UNK4 145 aa10.7□□□□□ -0.7
USB1-209ENST00000564387 LRP1Q07954 4544 aaKnown RBP10.69□□□□□ -0.7
USB1-209ENST00000564387 FAM19A5Q7Z5A7 132 aaPredicted RBP10.69□□□□□ -0.7
USB1-209ENST00000564387 MAP1LC3CQ9BXW4 147 aa10.69□□□□□ -0.7
USB1-209ENST00000564387 H0Y8G0 127 aa10.68□□□□□ -0.7
USB1-209ENST00000564387 SRSF9Q13242 221 aaKnown RBP eCLIP10.68□□□□□ -0.7
USB1-209ENST00000564387 SERTAD4-AS1Q5TG53 156 aa10.68□□□□□ -0.7
USB1-209ENST00000564387 PSORS1C2Q9UIG4 136 aa10.68□□□□□ -0.7
USB1-209ENST00000564387 M0QXV9 152 aa10.67□□□□□ -0.7
USB1-209ENST00000564387 DPM2O94777 84 aa10.67□□□□□ -0.7
USB1-209ENST00000564387 OXTP01178 125 aa10.67□□□□□ -0.7
USB1-209ENST00000564387 KRTAP11-1Q8IUC1 163 aa10.67□□□□□ -0.7
USB1-209ENST00000564387 TP73-AS1Q9UF72 201 aa10.67□□□□□ -0.7
USB1-209ENST00000564387 ERG28Q9UKR5 140 aa10.67□□□□□ -0.7
USB1-209ENST00000564387 SYS1-DBNDD2H3BUS1 97 aa10.66□□□□□ -0.7
USB1-209ENST00000564387 FAT3Q8TDW7 4589 aa10.66□□□□□ -0.7
USB1-209ENST00000564387 DMBT1Q9UGM3 2413 aaPredicted RBP10.66□□□□□ -0.7
USB1-209ENST00000564387 IGLV5-37A0A075B6J1 123 aa10.65□□□□□ -0.7
USB1-209ENST00000564387 IGKCP01834 107 aa10.65□□□□□ -0.7
USB1-209ENST00000564387 C22orf24Q9Y442 160 aa10.65□□□□□ -0.7
USB1-209ENST00000564387 PFN2P35080 140 aa10.64□□□□□ -0.71
USB1-209ENST00000564387 PMCHL2Q9BQD1 86 aa10.64□□□□□ -0.71
USB1-209ENST00000564387 LEPROTO15243 131 aa10.63□□□□□ -0.71
USB1-209ENST00000564387 LINC01545Q5VT33 79 aa10.63□□□□□ -0.71
USB1-209ENST00000564387 SPINK6Q6UWN8 80 aa10.63□□□□□ -0.71
USB1-209ENST00000564387 HERV-K104P63124 156 aa10.62□□□□□ -0.71
USB1-209ENST00000564387 PET117Q6UWS5 81 aa10.62□□□□□ -0.71
USB1-209ENST00000564387 SND1-IT1Q9HBX3 110 aa10.62□□□□□ -0.71
USB1-209ENST00000564387 HERC1Q15751 4861 aa10.62□□□□□ -0.71
USB1-209ENST00000564387 TSPEAR-AS2P59090 65 aa10.61□□□□□ -0.71
USB1-209ENST00000564387 LBHQ53QV2 105 aaPredicted RBP10.61□□□□□ -0.71
USB1-209ENST00000564387 MRPL55Q7Z7F7 128 aaKnown RBP10.61□□□□□ -0.71
USB1-209ENST00000564387 PLEKHB2Q96CS7 222 aa10.61□□□□□ -0.71
USB1-209ENST00000564387 NDUFA12Q9UI09 145 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms