RNA–Protein interactions for RNA: ENST00000563109.1

RAB40C-207, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 710 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-207ENST00000563109 HERVK_113P61574 105 aa12.18□□□□□ -0.46
RAB40C-207ENST00000563109 LINC01620Q4KN68 170 aa12.18□□□□□ -0.46
RAB40C-207ENST00000563109 AKR1D1P51857 326 aa12.16□□□□□ -0.46
RAB40C-207ENST00000563109 EPPK1P58107 5090 aaKnown RBP12.16□□□□□ -0.46
RAB40C-207ENST00000563109 KRTAP10-1P60331 282 aa12.15□□□□□ -0.46
RAB40C-207ENST00000563109 RNF151Q2KHN1 245 aa12.15□□□□□ -0.46
RAB40C-207ENST00000563109 C2orf82Q6UX34 121 aa12.15□□□□□ -0.46
RAB40C-207ENST00000563109 UNQ6190/PRO20217Q6UXQ8 127 aa12.15□□□□□ -0.46
RAB40C-207ENST00000563109 DNAH5Q8TE73 4624 aa12.14□□□□□ -0.47
RAB40C-207ENST00000563109 TRBV30A0A0K0K1B3 111 aa12.14□□□□□ -0.47
RAB40C-207ENST00000563109 C10orf25Q5T742 122 aa12.13□□□□□ -0.47
RAB40C-207ENST00000563109 PKHD1P08F94 4074 aa12.12□□□□□ -0.47
RAB40C-207ENST00000563109 LOC107984640A0A0U1RRK4 108 aa12.12□□□□□ -0.47
RAB40C-207ENST00000563109 SFTA2Q6UW10 78 aa12.12□□□□□ -0.47
RAB40C-207ENST00000563109 C6orf48Q9UBA6 75 aa12.12□□□□□ -0.47
RAB40C-207ENST00000563109 SDIM1Q6ZPB5 146 aa12.11□□□□□ -0.47
RAB40C-207ENST00000563109 PLEKHB2Q96CS7 222 aa12.11□□□□□ -0.47
RAB40C-207ENST00000563109 LEPROTO15243 131 aa12.09□□□□□ -0.47
RAB40C-207ENST00000563109 RPL18AQ02543 176 aaKnown RBP12.09□□□□□ -0.47
RAB40C-207ENST00000563109 DYNC1H1Q14204 4646 aaKnown RBP12.08□□□□□ -0.48
RAB40C-207ENST00000563109 LGALS3P17931 250 aaKnown RBP12.07□□□□□ -0.48
RAB40C-207ENST00000563109 LINC00474Q9P2X8 69 aa12.07□□□□□ -0.48
RAB40C-207ENST00000563109 IGKV2-24A0A0C4DH68 120 aa12.06□□□□□ -0.48
RAB40C-207ENST00000563109 E9PLD3 99 aa12.06□□□□□ -0.48
RAB40C-207ENST00000563109 TLX1NBP0CAT3 122 aa12.06□□□□□ -0.48
RAB40C-207ENST00000563109 GAGE2BQ13066 116 aa12.06□□□□□ -0.48
RAB40C-207ENST00000563109 Q6ZSA8 131 aa12.06□□□□□ -0.48
RAB40C-207ENST00000563109 ATOH7Q8N100 152 aa12.06□□□□□ -0.48
RAB40C-207ENST00000563109 A0A096LNI7 61 aa12.05□□□□□ -0.48
RAB40C-207ENST00000563109 NDUFC2-KCTD14E9PQ53 114 aa12.05□□□□□ -0.48
RAB40C-207ENST00000563109 J3QQQ9 107 aa12.05□□□□□ -0.48
RAB40C-207ENST00000563109 SCGB1D1O95968 90 aa12.05□□□□□ -0.48
RAB40C-207ENST00000563109 C9orf116Q5BN46 136 aaPredicted RBP12.05□□□□□ -0.48
RAB40C-207ENST00000563109 STPG4Q8N801 248 aa12.05□□□□□ -0.48
RAB40C-207ENST00000563109 MYMXA0A1B0GTQ4 84 aa12.04□□□□□ -0.48
RAB40C-207ENST00000563109 CHTF8P0CG12 524 aa12.04□□□□□ -0.48
RAB40C-207ENST00000563109 PTTG1IPP53801 180 aa12.04□□□□□ -0.48
RAB40C-207ENST00000563109 ZNF625Q96I27 306 aaPredicted RBP12.04□□□□□ -0.48
RAB40C-207ENST00000563109 FAM30AQ9NZY2 134 aa12.04□□□□□ -0.48
RAB40C-207ENST00000563109 NDUFA12Q9UI09 145 aa12.04□□□□□ -0.48
RAB40C-207ENST00000563109 CDK2AP2O75956 126 aa12.03□□□□□ -0.48
RAB40C-207ENST00000563109 NMUP48645 174 aa12.03□□□□□ -0.48
RAB40C-207ENST00000563109 TSPEAR-AS2P59090 65 aa12.03□□□□□ -0.48
RAB40C-207ENST00000563109 HERV-K104P63124 156 aa12.03□□□□□ -0.48
RAB40C-207ENST00000563109 MAJINQ3KP22 176 aa12.03□□□□□ -0.48
RAB40C-207ENST00000563109 DPH3Q96FX2 82 aa12.03□□□□□ -0.48
RAB40C-207ENST00000563109 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.03□□□□□ -0.48
RAB40C-207ENST00000563109 SPACA4Q8TDM5 124 aa12.02□□□□□ -0.49
RAB40C-207ENST00000563109 ERG28Q9UKR5 140 aa12.02□□□□□ -0.49
RAB40C-207ENST00000563109 LRP1BQ9NZR2 4599 aa12.02□□□□□ -0.49
RAB40C-207ENST00000563109 HSBP1L1C9JCN9 74 aa12.01□□□□□ -0.49
RAB40C-207ENST00000563109 CIRBPQ14011 172 aaKnown RBP12.01□□□□□ -0.49
RAB40C-207ENST00000563109 GAGE2EQ4V326 116 aa12.01□□□□□ -0.49
RAB40C-207ENST00000563109 Q6ZRP5 223 aa12.01□□□□□ -0.49
RAB40C-207ENST00000563109 GAGE2DQ9UEU5 116 aa12.01□□□□□ -0.49
RAB40C-207ENST00000563109 LOC105371267A0A1B0GV96 52 aa12□□□□□ -0.49
RAB40C-207ENST00000563109 PFN2P35080 140 aa12□□□□□ -0.49
RAB40C-207ENST00000563109 MEIG1Q5JSS6 88 aa12□□□□□ -0.49
RAB40C-207ENST00000563109 LINC00587B1AMM8 73 aa11.99□□□□□ -0.49
RAB40C-207ENST00000563109 PANO1I0J062 215 aa11.99□□□□□ -0.49
RAB40C-207ENST00000563109 COX17Q14061 63 aa11.99□□□□□ -0.49
RAB40C-207ENST00000563109 SCXQ7RTU7 201 aa11.99□□□□□ -0.49
RAB40C-207ENST00000563109 BIRC6Q9NR09 4857 aa11.98□□□□□ -0.49
RAB40C-207ENST00000563109 HAMPP81172 84 aa11.98□□□□□ -0.49
RAB40C-207ENST00000563109 DNAH8Q96JB1 4490 aa11.97□□□□□ -0.49
RAB40C-207ENST00000563109 ANKRD39Q53RE8 183 aa11.97□□□□□ -0.49
RAB40C-207ENST00000563109 IGKV2D-26A0A0A0MRZ7 120 aa11.96□□□□□ -0.49
RAB40C-207ENST00000563109 XGP55808 180 aa11.96□□□□□ -0.49
RAB40C-207ENST00000563109 LINC00158P58513 81 aa11.96□□□□□ -0.49
RAB40C-207ENST00000563109 CIRBP-AS1Q8TBR5 109 aa11.96□□□□□ -0.49
RAB40C-207ENST00000563109 A0A087WYN8 130 aa11.95□□□□□ -0.5
RAB40C-207ENST00000563109 ZNF815PA8K554 130 aa11.95□□□□□ -0.5
RAB40C-207ENST00000563109 JOSD1Q15040 202 aaPredicted RBP11.95□□□□□ -0.5
RAB40C-207ENST00000563109 A0A0U1RRA0 63 aa11.93□□□□□ -0.5
RAB40C-207ENST00000563109 SMIM13P0DJ93 91 aa11.93□□□□□ -0.5
RAB40C-207ENST00000563109 XAGE1AQ9HD64 81 aa11.93□□□□□ -0.5
RAB40C-207ENST00000563109 PLAC8Q9NZF1 115 aa11.93□□□□□ -0.5
RAB40C-207ENST00000563109 C9orf129Q5T035 196 aaKnown RBP11.92□□□□□ -0.5
RAB40C-207ENST00000563109 A0A0J9YXY3 114 aa11.91□□□□□ -0.5
RAB40C-207ENST00000563109 APOBP04114 4563 aaKnown RBP11.9□□□□□ -0.5
RAB40C-207ENST00000563109 FAM19A5Q7Z5A7 132 aaPredicted RBP11.9□□□□□ -0.5
RAB40C-207ENST00000563109 TTTY13Q9BZ97 58 aa11.9□□□□□ -0.5
RAB40C-207ENST00000563109 SND1-IT1Q9HBX3 110 aa11.9□□□□□ -0.5
RAB40C-207ENST00000563109 MIR7-3HGQ8N6C7 128 aa11.89□□□□□ -0.51
RAB40C-207ENST00000563109 VAMP8Q9BV40 100 aa11.89□□□□□ -0.51
RAB40C-207ENST00000563109 A0A1W2PNN7 141 aa11.88□□□□□ -0.51
RAB40C-207ENST00000563109 SCGB1D4Q6XE38 83 aa11.88□□□□□ -0.51
RAB40C-207ENST00000563109 FAM168BA1KXE4 195 aa11.87□□□□□ -0.51
RAB40C-207ENST00000563109 PCP2Q8IVA1 136 aa11.87□□□□□ -0.51
RAB40C-207ENST00000563109 PYY3Q5JQD4 70 aa11.86□□□□□ -0.51
RAB40C-207ENST00000563109 PAM16Q9Y3D7 125 aa11.86□□□□□ -0.51
RAB40C-207ENST00000563109 TIMM17BO60830 172 aa11.85□□□□□ -0.51
RAB40C-207ENST00000563109 SMR3BP02814 79 aaPredicted RBP11.85□□□□□ -0.51
RAB40C-207ENST00000563109 C7orf33Q8WU49 177 aa11.85□□□□□ -0.51
RAB40C-207ENST00000563109 RYR1P21817 5038 aa11.84□□□□□ -0.51
RAB40C-207ENST00000563109 M0QXV9 152 aa11.84□□□□□ -0.51
RAB40C-207ENST00000563109 SPATA45Q537H7 98 aa11.84□□□□□ -0.51
RAB40C-207ENST00000563109 DAND5Q8N907 189 aa11.84□□□□□ -0.51
RAB40C-207ENST00000563109 MIEN1Q9BRT3 115 aa11.84□□□□□ -0.51
RAB40C-207ENST00000563109 PLA2G2DQ9UNK4 145 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms