RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SEC11AP67812 179 aa6.25□□□□□ -1.41
CLK3-208ENST00000562626 C2orf48Q96LS8 159 aa6.25□□□□□ -1.41
CLK3-208ENST00000562626 CAMK2N2Q96S95 79 aa6.25□□□□□ -1.41
CLK3-208ENST00000562626 TOMM7Q9P0U1 55 aa6.25□□□□□ -1.41
CLK3-208ENST00000562626 IGLV5-39A0A0G2JS06 123 aa6.24□□□□□ -1.41
CLK3-208ENST00000562626 CDK2AP2O75956 126 aa6.24□□□□□ -1.41
CLK3-208ENST00000562626 C9orf116Q5BN46 136 aaPredicted RBP6.24□□□□□ -1.41
CLK3-208ENST00000562626 SCXQ7RTU7 201 aa6.24□□□□□ -1.41
CLK3-208ENST00000562626 LINC00518Q8N0U6 118 aa6.24□□□□□ -1.41
CLK3-208ENST00000562626 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.23□□□□□ -1.41
CLK3-208ENST00000562626 TMEM170BQ5T4T1 132 aa6.23□□□□□ -1.41
CLK3-208ENST00000562626 Q8IZM0 81 aa6.23□□□□□ -1.41
CLK3-208ENST00000562626 HIST3H2BBQ8N257 126 aa6.23□□□□□ -1.41
CLK3-208ENST00000562626 PACRGQ96M98 296 aaPredicted RBP6.23□□□□□ -1.41
CLK3-208ENST00000562626 HSPB8Q9UJY1 196 aa6.23□□□□□ -1.41
CLK3-208ENST00000562626 IGKV2-24A0A0C4DH68 120 aa6.22□□□□□ -1.41
CLK3-208ENST00000562626 TMEM223A0PJW6 202 aa6.22□□□□□ -1.41
CLK3-208ENST00000562626 SYS1-DBNDD2H3BUS1 97 aa6.22□□□□□ -1.41
CLK3-208ENST00000562626 NDUFA1O15239 70 aa6.22□□□□□ -1.41
CLK3-208ENST00000562626 C3orf79P0CE67 100 aa6.22□□□□□ -1.41
CLK3-208ENST00000562626 CIRBPQ14011 172 aaKnown RBP6.22□□□□□ -1.41
CLK3-208ENST00000562626 COX7B2Q8TF08 81 aa6.22□□□□□ -1.41
CLK3-208ENST00000562626 VPS13BQ7Z7G8 4022 aa6.22□□□□□ -1.41
CLK3-208ENST00000562626 SMR3BP02814 79 aaPredicted RBP6.21□□□□□ -1.42
CLK3-208ENST00000562626 S100A6P06703 90 aa6.21□□□□□ -1.42
CLK3-208ENST00000562626 CIRBP-AS1Q8TBR5 109 aa6.21□□□□□ -1.42
CLK3-208ENST00000562626 SPACA4Q8TDM5 124 aa6.21□□□□□ -1.42
CLK3-208ENST00000562626 MAP1LC3CQ9BXW4 147 aa6.21□□□□□ -1.42
CLK3-208ENST00000562626 FAT1Q14517 4588 aa6.21□□□□□ -1.42
CLK3-208ENST00000562626 H3BRM9 83 aa6.2□□□□□ -1.42
CLK3-208ENST00000562626 TSPEAR-AS2P59090 65 aa6.2□□□□□ -1.42
CLK3-208ENST00000562626 RNF151Q2KHN1 245 aa6.2□□□□□ -1.42
CLK3-208ENST00000562626 C6orf226Q5I0X4 101 aa6.2□□□□□ -1.42
CLK3-208ENST00000562626 HIST1H2BLQ99880 126 aa6.2□□□□□ -1.42
CLK3-208ENST00000562626 A0A087WYN8 130 aa6.19□□□□□ -1.42
CLK3-208ENST00000562626 LOC107984640A0A0U1RRK4 108 aa6.19□□□□□ -1.42
CLK3-208ENST00000562626 F8WDY8 70 aa6.19□□□□□ -1.42
CLK3-208ENST00000562626 PRSS2P07478 247 aa6.19□□□□□ -1.42
CLK3-208ENST00000562626 PTTG1IPP53801 180 aa6.19□□□□□ -1.42
CLK3-208ENST00000562626 SNRPEP62304 92 aaKnown RBP6.19□□□□□ -1.42
CLK3-208ENST00000562626 RPL18AQ02543 176 aaKnown RBP6.19□□□□□ -1.42
CLK3-208ENST00000562626 GAGE2BQ13066 116 aa6.19□□□□□ -1.42
CLK3-208ENST00000562626 LINC01545Q5VT33 79 aa6.19□□□□□ -1.42
CLK3-208ENST00000562626 Q6ZRP5 223 aa6.19□□□□□ -1.42
CLK3-208ENST00000562626 PKHD1L1Q86WI1 4243 aa6.19□□□□□ -1.42
CLK3-208ENST00000562626 TRBV30A0A0K0K1B3 111 aa6.18□□□□□ -1.42
CLK3-208ENST00000562626 FAM168BA1KXE4 195 aa6.18□□□□□ -1.42
CLK3-208ENST00000562626 C5orf52A6NGY3 159 aa6.18□□□□□ -1.42
CLK3-208ENST00000562626 DPM2O94777 84 aa6.18□□□□□ -1.42
CLK3-208ENST00000562626 IGKCP01834 107 aa6.18□□□□□ -1.42
CLK3-208ENST00000562626 KRTDAPP60985 99 aa6.18□□□□□ -1.42
CLK3-208ENST00000562626 CKS1BP61024 79 aa6.18□□□□□ -1.42
CLK3-208ENST00000562626 MAJINQ3KP22 176 aa6.18□□□□□ -1.42
CLK3-208ENST00000562626 KRTAP7-1Q8IUC3 87 aa6.18□□□□□ -1.42
CLK3-208ENST00000562626 A0A1W2PNN7 141 aa6.17□□□□□ -1.42
CLK3-208ENST00000562626 TLX1NBP0CAT3 122 aa6.17□□□□□ -1.42
CLK3-208ENST00000562626 GAGE2EQ4V326 116 aa6.17□□□□□ -1.42
CLK3-208ENST00000562626 C9orf129Q5T035 196 aaKnown RBP6.17□□□□□ -1.42
CLK3-208ENST00000562626 PET117Q6UWS5 81 aa6.17□□□□□ -1.42
CLK3-208ENST00000562626 ZNF625Q96I27 306 aaPredicted RBP6.17□□□□□ -1.42
CLK3-208ENST00000562626 GAGE2DQ9UEU5 116 aa6.17□□□□□ -1.42
CLK3-208ENST00000562626 SMIM6P0DI80 62 aa6.16□□□□□ -1.42
CLK3-208ENST00000562626 PLNP26678 52 aa6.16□□□□□ -1.42
CLK3-208ENST00000562626 STPG4Q8N801 248 aa6.16□□□□□ -1.42
CLK3-208ENST00000562626 C12orf57Q99622 126 aa6.16□□□□□ -1.42
CLK3-208ENST00000562626 PLAC8Q9NZF1 115 aa6.16□□□□□ -1.42
CLK3-208ENST00000562626 PCP4L1A6NKN8 68 aa6.15□□□□□ -1.42
CLK3-208ENST00000562626 EPM2AB3EWF7 344 aa6.15□□□□□ -1.42
CLK3-208ENST00000562626 NDUFC2-KCTD14E9PQ53 114 aa6.15□□□□□ -1.42
CLK3-208ENST00000562626 CXCL5P42830 114 aa6.15□□□□□ -1.42
CLK3-208ENST00000562626 KRTAP10-4P60372 401 aaPredicted RBP6.15□□□□□ -1.42
CLK3-208ENST00000562626 ATOH7Q8N100 152 aa6.15□□□□□ -1.42
CLK3-208ENST00000562626 LINC00528Q8N1L1 170 aa6.15□□□□□ -1.42
CLK3-208ENST00000562626 Q8N1X5 172 aa6.15□□□□□ -1.42
CLK3-208ENST00000562626 XAGE1AQ9HD64 81 aa6.15□□□□□ -1.42
CLK3-208ENST00000562626 IGKV2D-26A0A0A0MRZ7 120 aa6.14□□□□□ -1.43
CLK3-208ENST00000562626 LEPROTO15243 131 aa6.14□□□□□ -1.43
CLK3-208ENST00000562626 AKR1D1P51857 326 aa6.14□□□□□ -1.43
CLK3-208ENST00000562626 Q5VSD8 79 aa6.14□□□□□ -1.43
CLK3-208ENST00000562626 S100A2P29034 98 aa6.13□□□□□ -1.43
CLK3-208ENST00000562626 PFN2P35080 140 aa6.13□□□□□ -1.43
CLK3-208ENST00000562626 ANKRD39Q53RE8 183 aa6.13□□□□□ -1.43
CLK3-208ENST00000562626 SERTAD4-AS1Q5TG53 156 aa6.13□□□□□ -1.43
CLK3-208ENST00000562626 KRTAP11-1Q8IUC1 163 aa6.13□□□□□ -1.43
CLK3-208ENST00000562626 DPH3Q96FX2 82 aa6.13□□□□□ -1.43
CLK3-208ENST00000562626 TTTY13Q9BZ97 58 aa6.13□□□□□ -1.43
CLK3-208ENST00000562626 ERG28Q9UKR5 140 aa6.13□□□□□ -1.43
CLK3-208ENST00000562626 A0A0U1RRA0 63 aa6.12□□□□□ -1.43
CLK3-208ENST00000562626 J3QQQ9 107 aa6.12□□□□□ -1.43
CLK3-208ENST00000562626 PHF5AQ7RTV0 110 aaKnown RBP6.12□□□□□ -1.43
CLK3-208ENST00000562626 FAM19A5Q7Z5A7 132 aaPredicted RBP6.12□□□□□ -1.43
CLK3-208ENST00000562626 Q8NDZ9 215 aa6.12□□□□□ -1.43
CLK3-208ENST00000562626 NDUFA12Q9UI09 145 aa6.12□□□□□ -1.43
CLK3-208ENST00000562626 SRRM2Q9UQ35 2752 aaKnown RBP6.12□□□□□ -1.43
CLK3-208ENST00000562626 E9PLD3 99 aa6.11□□□□□ -1.43
CLK3-208ENST00000562626 SMIM13P0DJ93 91 aa6.1□□□□□ -1.43
CLK3-208ENST00000562626 HNRNPA3P51991 378 aaKnown RBP6.1□□□□□ -1.43
CLK3-208ENST00000562626 HERVK_113P61574 105 aa6.1□□□□□ -1.43
CLK3-208ENST00000562626 PLEKHB2Q96CS7 222 aa6.1□□□□□ -1.43
CLK3-208ENST00000562626 LINC00474Q9P2X8 69 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 120.8 ms