RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 HIST3H2BBQ8N257 126 aa6.52□□□□□ -1.37
USP3-216ENST00000559873 IGLV5-39A0A0G2JS06 123 aa6.51□□□□□ -1.37
USP3-216ENST00000559873 LOC107984640A0A0U1RRK4 108 aa6.51□□□□□ -1.37
USP3-216ENST00000559873 SLPIP03973 132 aa6.51□□□□□ -1.37
USP3-216ENST00000559873 KIAA0087Q14695 138 aa6.51□□□□□ -1.37
USP3-216ENST00000559873 LINC01620Q4KN68 170 aa6.51□□□□□ -1.37
USP3-216ENST00000559873 LINC00474Q9P2X8 69 aa6.51□□□□□ -1.37
USP3-216ENST00000559873 TMEM223A0PJW6 202 aa6.5□□□□□ -1.37
USP3-216ENST00000559873 CDK2AP2O75956 126 aa6.5□□□□□ -1.37
USP3-216ENST00000559873 C3orf79P0CE67 100 aa6.5□□□□□ -1.37
USP3-216ENST00000559873 SNRPEP62304 92 aaKnown RBP6.5□□□□□ -1.37
USP3-216ENST00000559873 LINC01545Q5VT33 79 aa6.5□□□□□ -1.37
USP3-216ENST00000559873 HIST1H2BLQ99880 126 aa6.5□□□□□ -1.37
USP3-216ENST00000559873 RPL18AQ02543 176 aaKnown RBP6.49□□□□□ -1.37
USP3-216ENST00000559873 C2orf82Q6UX34 121 aa6.49□□□□□ -1.37
USP3-216ENST00000559873 UNQ6190/PRO20217Q6UXQ8 127 aa6.49□□□□□ -1.37
USP3-216ENST00000559873 SDIM1Q6ZPB5 146 aa6.49□□□□□ -1.37
USP3-216ENST00000559873 PMCHL2Q9BQD1 86 aa6.49□□□□□ -1.37
USP3-216ENST00000559873 C6orf48Q9UBA6 75 aa6.49□□□□□ -1.37
USP3-216ENST00000559873 C5orf52A6NGY3 159 aa6.48□□□□□ -1.37
USP3-216ENST00000559873 Q6ZSA8 131 aa6.48□□□□□ -1.37
USP3-216ENST00000559873 PLEKHB2Q96CS7 222 aa6.48□□□□□ -1.37
USP3-216ENST00000559873 IGKV2-24A0A0C4DH68 120 aa6.47□□□□□ -1.37
USP3-216ENST00000559873 TLX1NBP0CAT3 122 aa6.47□□□□□ -1.37
USP3-216ENST00000559873 GAGE2BQ13066 116 aa6.47□□□□□ -1.37
USP3-216ENST00000559873 C10orf25Q5T742 122 aa6.47□□□□□ -1.37
USP3-216ENST00000559873 A0A096LNI7 61 aa6.46□□□□□ -1.38
USP3-216ENST00000559873 NDUFC2-KCTD14E9PQ53 114 aa6.46□□□□□ -1.38
USP3-216ENST00000559873 PTTG1IPP53801 180 aa6.46□□□□□ -1.38
USP3-216ENST00000559873 SPACA4Q8TDM5 124 aa6.46□□□□□ -1.38
USP3-216ENST00000559873 DPH3Q96FX2 82 aa6.46□□□□□ -1.38
USP3-216ENST00000559873 APOBP04114 4563 aaKnown RBP6.45□□□□□ -1.38
USP3-216ENST00000559873 DNAH8Q96JB1 4490 aa6.45□□□□□ -1.38
USP3-216ENST00000559873 MYMXA0A1B0GTQ4 84 aa6.45□□□□□ -1.38
USP3-216ENST00000559873 LEPROTO15243 131 aa6.45□□□□□ -1.38
USP3-216ENST00000559873 LGALS3P17931 250 aaKnown RBP6.45□□□□□ -1.38
USP3-216ENST00000559873 NMUP48645 174 aa6.45□□□□□ -1.38
USP3-216ENST00000559873 HERV-K104P63124 156 aa6.45□□□□□ -1.38
USP3-216ENST00000559873 CIRBPQ14011 172 aaKnown RBP6.45□□□□□ -1.38
USP3-216ENST00000559873 MAJINQ3KP22 176 aa6.45□□□□□ -1.38
USP3-216ENST00000559873 LINC00587B1AMM8 73 aa6.44□□□□□ -1.38
USP3-216ENST00000559873 E9PLD3 99 aa6.44□□□□□ -1.38
USP3-216ENST00000559873 CHTF8P0CG12 524 aa6.44□□□□□ -1.38
USP3-216ENST00000559873 COX17Q14061 63 aa6.44□□□□□ -1.38
USP3-216ENST00000559873 SCXQ7RTU7 201 aa6.44□□□□□ -1.38
USP3-216ENST00000559873 FAM30AQ9NZY2 134 aa6.44□□□□□ -1.38
USP3-216ENST00000559873 NDUFA12Q9UI09 145 aa6.44□□□□□ -1.38
USP3-216ENST00000559873 TMA7Q9Y2S6 64 aaKnown RBP6.44□□□□□ -1.38
USP3-216ENST00000559873 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.44□□□□□ -1.38
USP3-216ENST00000559873 RYR1P21817 5038 aa6.44□□□□□ -1.38
USP3-216ENST00000559873 HSBP1L1C9JCN9 74 aa6.43□□□□□ -1.38
USP3-216ENST00000559873 J3QQQ9 107 aa6.43□□□□□ -1.38
USP3-216ENST00000559873 GAGE2EQ4V326 116 aa6.43□□□□□ -1.38
USP3-216ENST00000559873 C9orf116Q5BN46 136 aaPredicted RBP6.43□□□□□ -1.38
USP3-216ENST00000559873 MEIG1Q5JSS6 88 aa6.43□□□□□ -1.38
USP3-216ENST00000559873 STPG4Q8N801 248 aa6.43□□□□□ -1.38
USP3-216ENST00000559873 CIRBP-AS1Q8TBR5 109 aa6.43□□□□□ -1.38
USP3-216ENST00000559873 ZNF625Q96I27 306 aaPredicted RBP6.43□□□□□ -1.38
USP3-216ENST00000559873 GAGE2DQ9UEU5 116 aa6.43□□□□□ -1.38
USP3-216ENST00000559873 ERG28Q9UKR5 140 aa6.43□□□□□ -1.38
USP3-216ENST00000559873 Q6ZRP5 223 aa6.42□□□□□ -1.38
USP3-216ENST00000559873 KIAA1109Q2LD37 5005 aa6.42□□□□□ -1.38
USP3-216ENST00000559873 A0A087WYN8 130 aa6.41□□□□□ -1.38
USP3-216ENST00000559873 SCGB1D1O95968 90 aa6.41□□□□□ -1.38
USP3-216ENST00000559873 PFN2P35080 140 aa6.41□□□□□ -1.38
USP3-216ENST00000559873 XGP55808 180 aa6.41□□□□□ -1.38
USP3-216ENST00000559873 PLAC8Q9NZF1 115 aa6.41□□□□□ -1.38
USP3-216ENST00000559873 PANO1I0J062 215 aa6.4□□□□□ -1.38
USP3-216ENST00000559873 TSPEAR-AS2P59090 65 aa6.4□□□□□ -1.38
USP3-216ENST00000559873 HAMPP81172 84 aa6.4□□□□□ -1.38
USP3-216ENST00000559873 ATOH7Q8N100 152 aa6.4□□□□□ -1.38
USP3-216ENST00000559873 C7orf33Q8WU49 177 aa6.4□□□□□ -1.38
USP3-216ENST00000559873 LINC00158P58513 81 aa6.39□□□□□ -1.39
USP3-216ENST00000559873 XAGE1AQ9HD64 81 aa6.39□□□□□ -1.39
USP3-216ENST00000559873 HSPG2P98160 4391 aa6.39□□□□□ -1.39
USP3-216ENST00000559873 ZNF815PA8K554 130 aa6.38□□□□□ -1.39
USP3-216ENST00000559873 FAM229AH3BQW9 127 aa6.38□□□□□ -1.39
USP3-216ENST00000559873 LINC00528Q8N1L1 170 aa6.38□□□□□ -1.39
USP3-216ENST00000559873 HERC2O95714 4834 aa6.38□□□□□ -1.39
USP3-216ENST00000559873 SMIM13P0DJ93 91 aa6.37□□□□□ -1.39
USP3-216ENST00000559873 ANKRD39Q53RE8 183 aa6.37□□□□□ -1.39
USP3-216ENST00000559873 C9orf129Q5T035 196 aaKnown RBP6.37□□□□□ -1.39
USP3-216ENST00000559873 FAM19A5Q7Z5A7 132 aaPredicted RBP6.37□□□□□ -1.39
USP3-216ENST00000559873 Q8N1X5 172 aa6.37□□□□□ -1.39
USP3-216ENST00000559873 A0A0U1RRA0 63 aa6.36□□□□□ -1.39
USP3-216ENST00000559873 M0QXV9 152 aa6.36□□□□□ -1.39
USP3-216ENST00000559873 PLA2G1BP04054 148 aaKnown RBP6.36□□□□□ -1.39
USP3-216ENST00000559873 RPL24P83731 157 aaKnown RBP6.36□□□□□ -1.39
USP3-216ENST00000559873 MIEN1Q9BRT3 115 aa6.36□□□□□ -1.39
USP3-216ENST00000559873 SND1-IT1Q9HBX3 110 aa6.36□□□□□ -1.39
USP3-216ENST00000559873 IGKV2D-26A0A0A0MRZ7 120 aa6.35□□□□□ -1.39
USP3-216ENST00000559873 A0A0J9YXY3 114 aa6.35□□□□□ -1.39
USP3-216ENST00000559873 EPM2AB3EWF7 344 aa6.35□□□□□ -1.39
USP3-216ENST00000559873 SMR3BP02814 79 aaPredicted RBP6.35□□□□□ -1.39
USP3-216ENST00000559873 JOSD1Q15040 202 aaPredicted RBP6.35□□□□□ -1.39
USP3-216ENST00000559873 LBHQ53QV2 105 aaPredicted RBP6.35□□□□□ -1.39
USP3-216ENST00000559873 SCGB1D4Q6XE38 83 aa6.35□□□□□ -1.39
USP3-216ENST00000559873 MIR7-3HGQ8N6C7 128 aa6.35□□□□□ -1.39
USP3-216ENST00000559873 NKAPP1Q8N9T2 125 aa6.35□□□□□ -1.39
USP3-216ENST00000559873 PLA2G2DQ9UNK4 145 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms