RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 C6orf226Q5I0X4 101 aa7.92□□□□□ -1.14
SHMT2-209ENST00000553949 C2orf82Q6UX34 121 aa7.92□□□□□ -1.14
SHMT2-209ENST00000553949 Q6ZRU5 148 aa7.92□□□□□ -1.14
SHMT2-209ENST00000553949 C9orf163Q8N9P6 203 aa7.92□□□□□ -1.14
SHMT2-209ENST00000553949 DNAH8Q96JB1 4490 aa7.91□□□□□ -1.14
SHMT2-209ENST00000553949 CKS1BP61024 79 aa7.91□□□□□ -1.14
SHMT2-209ENST00000553949 C10orf25Q5T742 122 aa7.91□□□□□ -1.14
SHMT2-209ENST00000553949 KRTAP10-1P60331 282 aa7.9□□□□□ -1.14
SHMT2-209ENST00000553949 HERVK_113P61574 105 aa7.9□□□□□ -1.14
SHMT2-209ENST00000553949 UNQ6190/PRO20217Q6UXQ8 127 aa7.9□□□□□ -1.14
SHMT2-209ENST00000553949 CXCL5P42830 114 aa7.89□□□□□ -1.15
SHMT2-209ENST00000553949 C6orf48Q9UBA6 75 aa7.89□□□□□ -1.15
SHMT2-209ENST00000553949 BIRC6Q9NR09 4857 aa7.88□□□□□ -1.15
SHMT2-209ENST00000553949 AKR1D1P51857 326 aa7.88□□□□□ -1.15
SHMT2-209ENST00000553949 RNF151Q2KHN1 245 aa7.88□□□□□ -1.15
SHMT2-209ENST00000553949 SDIM1Q6ZPB5 146 aa7.88□□□□□ -1.15
SHMT2-209ENST00000553949 APOBP04114 4563 aaKnown RBP7.87□□□□□ -1.15
SHMT2-209ENST00000553949 TRBV30A0A0K0K1B3 111 aa7.87□□□□□ -1.15
SHMT2-209ENST00000553949 LEPROTO15243 131 aa7.87□□□□□ -1.15
SHMT2-209ENST00000553949 ATOH7Q8N100 152 aa7.87□□□□□ -1.15
SHMT2-209ENST00000553949 STPG4Q8N801 248 aa7.87□□□□□ -1.15
SHMT2-209ENST00000553949 E9PLD3 99 aa7.86□□□□□ -1.15
SHMT2-209ENST00000553949 PLEKHB2Q96CS7 222 aa7.86□□□□□ -1.15
SHMT2-209ENST00000553949 LOC107984640A0A0U1RRK4 108 aa7.85□□□□□ -1.15
SHMT2-209ENST00000553949 J3QQQ9 107 aa7.85□□□□□ -1.15
SHMT2-209ENST00000553949 SCGB1D1O95968 90 aa7.85□□□□□ -1.15
SHMT2-209ENST00000553949 TSPEAR-AS2P59090 65 aa7.85□□□□□ -1.15
SHMT2-209ENST00000553949 C9orf116Q5BN46 136 aaPredicted RBP7.85□□□□□ -1.15
SHMT2-209ENST00000553949 SFTA2Q6UW10 78 aa7.85□□□□□ -1.15
SHMT2-209ENST00000553949 ZNF625Q96I27 306 aaPredicted RBP7.85□□□□□ -1.15
SHMT2-209ENST00000553949 PKIGQ9Y2B9 76 aa7.85□□□□□ -1.15
SHMT2-209ENST00000553949 TLX1NBP0CAT3 122 aa7.84□□□□□ -1.15
SHMT2-209ENST00000553949 FAM30AQ9NZY2 134 aa7.84□□□□□ -1.15
SHMT2-209ENST00000553949 NDUFA12Q9UI09 145 aa7.84□□□□□ -1.15
SHMT2-209ENST00000553949 LGALS3P17931 250 aaKnown RBP7.83□□□□□ -1.16
SHMT2-209ENST00000553949 Q6ZSA8 131 aa7.83□□□□□ -1.16
SHMT2-209ENST00000553949 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.83□□□□□ -1.16
SHMT2-209ENST00000553949 A0A096LNI7 61 aa7.82□□□□□ -1.16
SHMT2-209ENST00000553949 IGKV2D-26A0A0A0MRZ7 120 aa7.82□□□□□ -1.16
SHMT2-209ENST00000553949 IGKV2-24A0A0C4DH68 120 aa7.82□□□□□ -1.16
SHMT2-209ENST00000553949 MYMXA0A1B0GTQ4 84 aa7.82□□□□□ -1.16
SHMT2-209ENST00000553949 NDUFC2-KCTD14E9PQ53 114 aa7.82□□□□□ -1.16
SHMT2-209ENST00000553949 PANO1I0J062 215 aa7.82□□□□□ -1.16
SHMT2-209ENST00000553949 CHTF8P0CG12 524 aa7.82□□□□□ -1.16
SHMT2-209ENST00000553949 PTTG1IPP53801 180 aa7.82□□□□□ -1.16
SHMT2-209ENST00000553949 RPL18AQ02543 176 aaKnown RBP7.82□□□□□ -1.16
SHMT2-209ENST00000553949 GAGE2BQ13066 116 aa7.82□□□□□ -1.16
SHMT2-209ENST00000553949 MAJINQ3KP22 176 aa7.82□□□□□ -1.16
SHMT2-209ENST00000553949 ANKRD39Q53RE8 183 aa7.82□□□□□ -1.16
SHMT2-209ENST00000553949 NMUP48645 174 aa7.81□□□□□ -1.16
SHMT2-209ENST00000553949 JOSD1Q15040 202 aaPredicted RBP7.81□□□□□ -1.16
SHMT2-209ENST00000553949 Q6ZRP5 223 aa7.81□□□□□ -1.16
SHMT2-209ENST00000553949 ERG28Q9UKR5 140 aa7.81□□□□□ -1.16
SHMT2-209ENST00000553949 RYR1P21817 5038 aa7.8□□□□□ -1.16
SHMT2-209ENST00000553949 HSBP1L1C9JCN9 74 aa7.8□□□□□ -1.16
SHMT2-209ENST00000553949 HERV-K104P63124 156 aa7.8□□□□□ -1.16
SHMT2-209ENST00000553949 CIRBPQ14011 172 aaKnown RBP7.8□□□□□ -1.16
SHMT2-209ENST00000553949 GAGE2EQ4V326 116 aa7.8□□□□□ -1.16
SHMT2-209ENST00000553949 SPACA4Q8TDM5 124 aa7.8□□□□□ -1.16
SHMT2-209ENST00000553949 LINC00474Q9P2X8 69 aa7.8□□□□□ -1.16
SHMT2-209ENST00000553949 GAGE2DQ9UEU5 116 aa7.8□□□□□ -1.16
SHMT2-209ENST00000553949 KIAA1109Q2LD37 5005 aa7.79□□□□□ -1.16
SHMT2-209ENST00000553949 PFN2P35080 140 aa7.79□□□□□ -1.16
SHMT2-209ENST00000553949 COX17Q14061 63 aa7.79□□□□□ -1.16
SHMT2-209ENST00000553949 DPH3Q96FX2 82 aa7.79□□□□□ -1.16
SHMT2-209ENST00000553949 HSPG2P98160 4391 aa7.78□□□□□ -1.16
SHMT2-209ENST00000553949 CDK2AP2O75956 126 aa7.78□□□□□ -1.16
SHMT2-209ENST00000553949 XGP55808 180 aa7.78□□□□□ -1.16
SHMT2-209ENST00000553949 HAMPP81172 84 aa7.78□□□□□ -1.16
SHMT2-209ENST00000553949 ZNF815PA8K554 130 aa7.77□□□□□ -1.17
SHMT2-209ENST00000553949 LINC00587B1AMM8 73 aa7.77□□□□□ -1.17
SHMT2-209ENST00000553949 LINC00158P58513 81 aa7.77□□□□□ -1.17
SHMT2-209ENST00000553949 PYY3Q5JQD4 70 aa7.77□□□□□ -1.17
SHMT2-209ENST00000553949 MEIG1Q5JSS6 88 aa7.77□□□□□ -1.17
SHMT2-209ENST00000553949 SCXQ7RTU7 201 aa7.77□□□□□ -1.17
SHMT2-209ENST00000553949 CIRBP-AS1Q8TBR5 109 aa7.77□□□□□ -1.17
SHMT2-209ENST00000553949 TTTY13Q9BZ97 58 aa7.77□□□□□ -1.17
SHMT2-209ENST00000553949 A0A087WYN8 130 aa7.76□□□□□ -1.17
SHMT2-209ENST00000553949 A0A0J9YXY3 114 aa7.76□□□□□ -1.17
SHMT2-209ENST00000553949 SMIM13P0DJ93 91 aa7.76□□□□□ -1.17
SHMT2-209ENST00000553949 C9orf129Q5T035 196 aaKnown RBP7.76□□□□□ -1.17
SHMT2-209ENST00000553949 PCP2Q8IVA1 136 aa7.76□□□□□ -1.17
SHMT2-209ENST00000553949 XAGE1AQ9HD64 81 aa7.76□□□□□ -1.17
SHMT2-209ENST00000553949 A0A0U1RRA0 63 aa7.75□□□□□ -1.17
SHMT2-209ENST00000553949 PLAC8Q9NZF1 115 aa7.75□□□□□ -1.17
SHMT2-209ENST00000553949 A0A1W2PNN7 141 aa7.74□□□□□ -1.17
SHMT2-209ENST00000553949 VAMP8Q9BV40 100 aa7.74□□□□□ -1.17
SHMT2-209ENST00000553949 SND1-IT1Q9HBX3 110 aa7.74□□□□□ -1.17
SHMT2-209ENST00000553949 FAM168BA1KXE4 195 aa7.73□□□□□ -1.17
SHMT2-209ENST00000553949 MIR7-3HGQ8N6C7 128 aa7.73□□□□□ -1.17
SHMT2-209ENST00000553949 PAM16Q9Y3D7 125 aa7.73□□□□□ -1.17
SHMT2-209ENST00000553949 FAT1Q14517 4588 aa7.72□□□□□ -1.17
SHMT2-209ENST00000553949 EPM2AB3EWF7 344 aa7.72□□□□□ -1.17
SHMT2-209ENST00000553949 SPATA45Q537H7 98 aa7.72□□□□□ -1.17
SHMT2-209ENST00000553949 TIMM17BO60830 172 aa7.71□□□□□ -1.18
SHMT2-209ENST00000553949 SCGB1D4Q6XE38 83 aa7.71□□□□□ -1.18
SHMT2-209ENST00000553949 FAM19A5Q7Z5A7 132 aaPredicted RBP7.71□□□□□ -1.18
SHMT2-209ENST00000553949 KRTAP7-1Q8IUC3 87 aa7.71□□□□□ -1.18
SHMT2-209ENST00000553949 DAND5Q8N907 189 aa7.71□□□□□ -1.18
SHMT2-209ENST00000553949 LITAFQ99732 161 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms