RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 NDUFA1O15239 70 aa5.45□□□□□ -1.54
LIMA1-216ENST00000552909 RBMY1DP0C7P1 496 aaKnown RBP5.45□□□□□ -1.54
LIMA1-216ENST00000552909 Q6JHZ5 121 aa5.45□□□□□ -1.54
LIMA1-216ENST00000552909 C9orf85Q96MD7 179 aa5.45□□□□□ -1.54
LIMA1-216ENST00000552909 C22orf24Q9Y442 160 aa5.45□□□□□ -1.54
LIMA1-216ENST00000552909 IGKV3-20P01619 116 aa5.45□□□□□ -1.54
LIMA1-216ENST00000552909 MALP21145 153 aa5.45□□□□□ -1.54
LIMA1-216ENST00000552909 DEFB131AP59861 70 aa5.45□□□□□ -1.54
LIMA1-216ENST00000552909 ODF3L2Q3SX64 289 aa5.45□□□□□ -1.54
LIMA1-216ENST00000552909 RNASE13Q5GAN3 156 aaKnown RBP5.45□□□□□ -1.54
LIMA1-216ENST00000552909 FAM104AQ969W3 186 aa5.45□□□□□ -1.54
LIMA1-216ENST00000552909 IGHV3-16A0A0C4DH30 117 aa5.44□□□□□ -1.54
LIMA1-216ENST00000552909 IGKV3D-7A0A0C4DH55 119 aa5.44□□□□□ -1.54
LIMA1-216ENST00000552909 RS1O15537 224 aa5.44□□□□□ -1.54
LIMA1-216ENST00000552909 KNCNA6PVL3 124 aa5.43□□□□□ -1.54
LIMA1-216ENST00000552909 USP17L23D6RBM5 183 aa5.43□□□□□ -1.54
LIMA1-216ENST00000552909 ZNF415Q09FC8 603 aa5.43□□□□□ -1.54
LIMA1-216ENST00000552909 TENM2Q9NT68 2774 aa5.43□□□□□ -1.54
LIMA1-216ENST00000552909 FAM218AQ96MZ4 157 aa5.43□□□□□ -1.54
LIMA1-216ENST00000552909 TM2D3Q9BRN9 247 aa5.43□□□□□ -1.54
LIMA1-216ENST00000552909 RETNQ9HD89 108 aa5.43□□□□□ -1.54
LIMA1-216ENST00000552909 STARD9Q9P2P6 4700 aa5.43□□□□□ -1.54
LIMA1-216ENST00000552909 A0A087WVE0 104 aa5.42□□□□□ -1.54
LIMA1-216ENST00000552909 MAP6D1Q9H9H5 199 aa5.42□□□□□ -1.54
LIMA1-216ENST00000552909 NDUFC2-KCTD14E9PQ53 114 aa5.42□□□□□ -1.54
LIMA1-216ENST00000552909 LINC01561Q8N1V8 128 aa5.42□□□□□ -1.54
LIMA1-216ENST00000552909 OVOL2Q9BRP0 275 aa5.42□□□□□ -1.54
LIMA1-216ENST00000552909 Q9H8V8 135 aa5.42□□□□□ -1.54
LIMA1-216ENST00000552909 Q9HAA7 133 aa5.42□□□□□ -1.54
LIMA1-216ENST00000552909 A0A0U1RRA0 63 aa5.41□□□□□ -1.54
LIMA1-216ENST00000552909 NDUFC2O95298 119 aa5.41□□□□□ -1.54
LIMA1-216ENST00000552909 CDKN2A-AS1Q9UH64 79 aa5.41□□□□□ -1.54
LIMA1-216ENST00000552909 UBE2D4Q9Y2X8 147 aa5.41□□□□□ -1.54
LIMA1-216ENST00000552909 TRAV12-2A0A075B6T6 113 aa5.4□□□□□ -1.54
LIMA1-216ENST00000552909 RPL35AP18077 110 aaKnown RBP5.4□□□□□ -1.54
LIMA1-216ENST00000552909 SOSTDC1Q6X4U4 206 aa5.4□□□□□ -1.54
LIMA1-216ENST00000552909 ZNF625Q96I27 306 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-216ENST00000552909 C14orf132Q9NPU4 83 aa5.4□□□□□ -1.54
LIMA1-216ENST00000552909 LINC00846Q9NV44 126 aa5.4□□□□□ -1.54
LIMA1-216ENST00000552909 PRO0628Q9UI54 55 aa5.4□□□□□ -1.54
LIMA1-216ENST00000552909 IGLV5-45A0A087WSX0 123 aa5.4□□□□□ -1.55
LIMA1-216ENST00000552909 FHL2Q14192 279 aa5.4□□□□□ -1.55
LIMA1-216ENST00000552909 SPINK13Q1W4C9 94 aa5.4□□□□□ -1.55
LIMA1-216ENST00000552909 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-216ENST00000552909 IGHV1OR15-1A0A075B7D0 117 aa5.39□□□□□ -1.55
LIMA1-216ENST00000552909 IGKV2-29A2NJV5 120 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-216ENST00000552909 PFN2P35080 140 aa5.39□□□□□ -1.55
LIMA1-216ENST00000552909 CMC4P56277 68 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-216ENST00000552909 WWC2-AS2Q96NR7 200 aa5.39□□□□□ -1.55
LIMA1-216ENST00000552909 RPL28P46779 137 aaKnown RBP5.39□□□□□ -1.55
LIMA1-216ENST00000552909 CHCHD7Q9BUK0 85 aa5.39□□□□□ -1.55
LIMA1-216ENST00000552909 PLECQ15149 4684 aaKnown RBP5.38□□□□□ -1.55
LIMA1-216ENST00000552909 IGHV3-73A0A0B4J1V6 119 aa5.38□□□□□ -1.55
LIMA1-216ENST00000552909 TRAV13-2A0A0B4J235 113 aa5.38□□□□□ -1.55
LIMA1-216ENST00000552909 IGLV5-39A0A0G2JS06 123 aa5.38□□□□□ -1.55
LIMA1-216ENST00000552909 DEFB135Q30KP9 77 aa5.38□□□□□ -1.55
LIMA1-216ENST00000552909 STHQ8IWL8 128 aa5.38□□□□□ -1.55
LIMA1-216ENST00000552909 TMEM243Q9BU79 118 aa5.38□□□□□ -1.55
LIMA1-216ENST00000552909 LYSTQ99698 3801 aa5.38□□□□□ -1.55
LIMA1-216ENST00000552909 FAM236DA0A1B0GTK5 79 aa5.38□□□□□ -1.55
LIMA1-216ENST00000552909 GHRHP01286 108 aa5.38□□□□□ -1.55
LIMA1-216ENST00000552909 CRPP02741 224 aa5.38□□□□□ -1.55
LIMA1-216ENST00000552909 RBMY1A1P0DJD3 496 aaKnown RBP5.38□□□□□ -1.55
LIMA1-216ENST00000552909 RBMY1CP0DJD4 496 aa5.38□□□□□ -1.55
LIMA1-216ENST00000552909 FAM236CP0DP71 79 aa5.38□□□□□ -1.55
LIMA1-216ENST00000552909 RBMY1FQ15415 496 aaKnown RBP5.38□□□□□ -1.55
LIMA1-216ENST00000552909 OBSCN-AS1Q96MR7 158 aa5.38□□□□□ -1.55
LIMA1-216ENST00000552909 RYR3Q15413 4870 aa5.37□□□□□ -1.55
LIMA1-216ENST00000552909 C9orf129Q5T035 196 aaKnown RBP5.37□□□□□ -1.55
LIMA1-216ENST00000552909 LINC00467Q9BRT7 94 aa5.37□□□□□ -1.55
LIMA1-216ENST00000552909 NACAE9PAV3 2078 aa5.37□□□□□ -1.55
LIMA1-216ENST00000552909 A0A087WYN8 130 aa5.36□□□□□ -1.55
LIMA1-216ENST00000552909 A8MTW9 85 aa5.36□□□□□ -1.55
LIMA1-216ENST00000552909 GIG44P09565 113 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-216ENST00000552909 HTN1P15515 57 aa5.36□□□□□ -1.55
LIMA1-216ENST00000552909 APOC4P55056 127 aa5.36□□□□□ -1.55
LIMA1-216ENST00000552909 COX6A2Q02221 97 aa5.36□□□□□ -1.55
LIMA1-216ENST00000552909 S100A7L2Q5SY68 101 aa5.36□□□□□ -1.55
LIMA1-216ENST00000552909 DGAT2L7PQ6IED9 249 aa5.36□□□□□ -1.55
LIMA1-216ENST00000552909 C1orf43Q9BWL3 253 aa5.36□□□□□ -1.55
LIMA1-216ENST00000552909 SERP1Q9Y6X1 66 aa5.36□□□□□ -1.55
LIMA1-216ENST00000552909 PIK3CD-AS1Q5SR53 167 aa5.36□□□□□ -1.55
LIMA1-216ENST00000552909 ATP5EP2Q5VTU8 51 aa5.36□□□□□ -1.55
LIMA1-216ENST00000552909 LINC00336Q6ZUF6 198 aa5.36□□□□□ -1.55
LIMA1-216ENST00000552909 XCL2Q9UBD3 114 aa5.36□□□□□ -1.55
LIMA1-216ENST00000552909 SACSQ9NZJ4 4579 aa5.36□□□□□ -1.55
LIMA1-216ENST00000552909 SMIM1B2RUZ4 78 aa5.35□□□□□ -1.55
LIMA1-216ENST00000552909 H0YGX0 51 aa5.35□□□□□ -1.55
LIMA1-216ENST00000552909 C20orf197Q8N268 126 aa5.35□□□□□ -1.55
LIMA1-216ENST00000552909 TRAV23DV6A0A075B6W5 121 aa5.35□□□□□ -1.55
LIMA1-216ENST00000552909 EPM2AB3EWF7 344 aa5.35□□□□□ -1.55
LIMA1-216ENST00000552909 F8WDY8 70 aa5.35□□□□□ -1.55
LIMA1-216ENST00000552909 NCR3O14931 201 aa5.35□□□□□ -1.55
LIMA1-216ENST00000552909 PRM2P04554 102 aa5.35□□□□□ -1.55
LIMA1-216ENST00000552909 LINC00242Q5T6M2 205 aa5.35□□□□□ -1.55
LIMA1-216ENST00000552909 XCL1P47992 114 aa5.34□□□□□ -1.55
LIMA1-216ENST00000552909 LCE2DQ5TA82 110 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-216ENST00000552909 LINC00337Q8N6G1 96 aa5.34□□□□□ -1.55
LIMA1-216ENST00000552909 MUC7Q8TAX7 377 aa5.34□□□□□ -1.55
LIMA1-216ENST00000552909 DYNC2H1Q8NCM8 4307 aaKnown RBP5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms