RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 C10orf25Q5T742 122 aa16.41■□□□□ 0.22
CPSF6-205ENST00000550075 C6orf48Q9UBA6 75 aa16.41■□□□□ 0.22
CPSF6-205ENST00000550075 HSBP1O75506 76 aa16.4■□□□□ 0.22
CPSF6-205ENST00000550075 COLCA2A8K830 154 aa16.39■□□□□ 0.21
CPSF6-205ENST00000550075 H3BRM9 83 aa16.39■□□□□ 0.21
CPSF6-205ENST00000550075 SMIM1B2RUZ4 78 aa16.38■□□□□ 0.21
CPSF6-205ENST00000550075 TLX1NBP0CAT3 122 aa16.38■□□□□ 0.21
CPSF6-205ENST00000550075 C2orf82Q6UX34 121 aa16.38■□□□□ 0.21
CPSF6-205ENST00000550075 IGLC3P0DOY3 106 aa16.37■□□□□ 0.21
CPSF6-205ENST00000550075 CXCL5P42830 114 aa16.37■□□□□ 0.21
CPSF6-205ENST00000550075 KRTAP10-4P60372 401 aaPredicted RBP16.34■□□□□ 0.21
CPSF6-205ENST00000550075 COX7B2Q8TF08 81 aa16.33■□□□□ 0.2
CPSF6-205ENST00000550075 FLG2Q5D862 2391 aaPredicted RBP16.33■□□□□ 0.2
CPSF6-205ENST00000550075 F8VRH5 84 aa16.32■□□□□ 0.2
CPSF6-205ENST00000550075 SPINK8P0C7L1 97 aa16.32■□□□□ 0.2
CPSF6-205ENST00000550075 IFI27L1Q96BM0 104 aa16.32■□□□□ 0.2
CPSF6-205ENST00000550075 NDUFC2-KCTD14E9PQ53 114 aa16.31■□□□□ 0.2
CPSF6-205ENST00000550075 SCO1O75880 301 aa16.31■□□□□ 0.2
CPSF6-205ENST00000550075 Q6ZRP5 223 aa16.31■□□□□ 0.2
CPSF6-205ENST00000550075 SERF1AO75920 110 aa16.3■□□□□ 0.2
CPSF6-205ENST00000550075 ZNF22P17026 224 aaPredicted RBP16.29■□□□□ 0.2
CPSF6-205ENST00000550075 GAGE2EQ4V326 116 aa16.29■□□□□ 0.2
CPSF6-205ENST00000550075 C9orf116Q5BN46 136 aaPredicted RBP16.29■□□□□ 0.2
CPSF6-205ENST00000550075 FAM19A2Q8N3H0 131 aa16.29■□□□□ 0.2
CPSF6-205ENST00000550075 GAGE2DQ9UEU5 116 aa16.29■□□□□ 0.2
CPSF6-205ENST00000550075 CHTOPQ9Y3Y2 248 aaKnown RBP16.29■□□□□ 0.2
CPSF6-205ENST00000550075 TRAV12-1A0A0B4J245 112 aa16.28■□□□□ 0.2
CPSF6-205ENST00000550075 A0A1W2PNN7 141 aa16.26■□□□□ 0.19
CPSF6-205ENST00000550075 C11orf86A6NJI1 115 aa16.25■□□□□ 0.19
CPSF6-205ENST00000550075 TMEM170BQ5T4T1 132 aa16.25■□□□□ 0.19
CPSF6-205ENST00000550075 IGLV5-39A0A0G2JS06 123 aa16.24■□□□□ 0.19
CPSF6-205ENST00000550075 LEPROTL1O95214 131 aa16.24■□□□□ 0.19
CPSF6-205ENST00000550075 LINC00310P59036 64 aa16.23■□□□□ 0.19
CPSF6-205ENST00000550075 HSPB8Q9UJY1 196 aa16.22■□□□□ 0.19
CPSF6-205ENST00000550075 PRR3P79522 188 aaKnown RBP16.21■□□□□ 0.19
CPSF6-205ENST00000550075 MYCBP2O75592 4640 aa16.2■□□□□ 0.18
CPSF6-205ENST00000550075 FAM19A5Q7Z5A7 132 aaPredicted RBP16.2■□□□□ 0.18
CPSF6-205ENST00000550075 DMBT1Q9UGM3 2413 aaPredicted RBP16.19■□□□□ 0.18
CPSF6-205ENST00000550075 H0Y8G0 127 aa16.17■□□□□ 0.18
CPSF6-205ENST00000550075 SFTA2Q6UW10 78 aa16.17■□□□□ 0.18
CPSF6-205ENST00000550075 PKHD1L1Q86WI1 4243 aa16.17■□□□□ 0.18
CPSF6-205ENST00000550075 FAM168BA1KXE4 195 aa16.16■□□□□ 0.18
CPSF6-205ENST00000550075 HIST1H2BKO60814 126 aa16.16■□□□□ 0.18
CPSF6-205ENST00000550075 HIST1H2BJP06899 126 aa16.16■□□□□ 0.18
CPSF6-205ENST00000550075 HIST1H2BOP23527 126 aa16.16■□□□□ 0.18
CPSF6-205ENST00000550075 HIST1H2BBP33778 126 aa16.16■□□□□ 0.18
CPSF6-205ENST00000550075 HNRNPA3P51991 378 aaKnown RBP16.16■□□□□ 0.18
CPSF6-205ENST00000550075 HIST1H2BDP58876 126 aa16.16■□□□□ 0.18
CPSF6-205ENST00000550075 HIST1H2BCP62807 126 aa16.16■□□□□ 0.18
CPSF6-205ENST00000550075 HIST2H2BEQ16778 126 aa16.16■□□□□ 0.18
CPSF6-205ENST00000550075 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.16■□□□□ 0.18
CPSF6-205ENST00000550075 C9orf129Q5T035 196 aaKnown RBP16.16■□□□□ 0.18
CPSF6-205ENST00000550075 PHF5AQ7RTV0 110 aaKnown RBP16.16■□□□□ 0.18
CPSF6-205ENST00000550075 HIST1H2BHQ93079 126 aa16.16■□□□□ 0.18
CPSF6-205ENST00000550075 HIST1H2BNQ99877 126 aa16.16■□□□□ 0.18
CPSF6-205ENST00000550075 HIST1H2BMQ99879 126 aa16.16■□□□□ 0.18
CPSF6-205ENST00000550075 M0QXV9 152 aa16.14■□□□□ 0.17
CPSF6-205ENST00000550075 NUPR1O60356 82 aa16.14■□□□□ 0.17
CPSF6-205ENST00000550075 FABP4P15090 132 aa16.14■□□□□ 0.17
CPSF6-205ENST00000550075 ODF1Q14990 250 aa16.13■□□□□ 0.17
CPSF6-205ENST00000550075 XAGE1AQ9HD64 81 aa16.13■□□□□ 0.17
CPSF6-205ENST00000550075 TMEM223A0PJW6 202 aa16.12■□□□□ 0.17
CPSF6-205ENST00000550075 J3QL48 77 aa16.12■□□□□ 0.17
CPSF6-205ENST00000550075 KRTAP29-1A8MX34 341 aaPredicted RBP16.11■□□□□ 0.17
CPSF6-205ENST00000550075 S100A1P23297 94 aa16.11■□□□□ 0.17
CPSF6-205ENST00000550075 OXTP01178 125 aa16.1■□□□□ 0.17
CPSF6-205ENST00000550075 PLNP26678 52 aa16.09■□□□□ 0.17
CPSF6-205ENST00000550075 MAP1LC3CQ9BXW4 147 aa16.09■□□□□ 0.17
CPSF6-205ENST00000550075 UBE2BP63146 152 aa16.08■□□□□ 0.16
CPSF6-205ENST00000550075 PSORS1C2Q9UIG4 136 aa16.08■□□□□ 0.16
CPSF6-205ENST00000550075 ERG28Q9UKR5 140 aa16.07■□□□□ 0.16
CPSF6-205ENST00000550075 PFN2P35080 140 aa16.06■□□□□ 0.16
CPSF6-205ENST00000550075 KRTAP7-1Q8IUC3 87 aa16.06■□□□□ 0.16
CPSF6-205ENST00000550075 DPM2O94777 84 aa16.05■□□□□ 0.16
CPSF6-205ENST00000550075 COX17Q14061 63 aa16.05■□□□□ 0.16
CPSF6-205ENST00000550075 SERTAD4-AS1Q5TG53 156 aa16.05■□□□□ 0.16
CPSF6-205ENST00000550075 LBHQ53QV2 105 aaPredicted RBP16.04■□□□□ 0.16
CPSF6-205ENST00000550075 ZNF625Q96I27 306 aaPredicted RBP16.04■□□□□ 0.16
CPSF6-205ENST00000550075 C1orf137Q5JT78 98 aa16.03■□□□□ 0.16
CPSF6-205ENST00000550075 ATP6V1G1O75348 118 aa16.02■□□□□ 0.16
CPSF6-205ENST00000550075 HERVK_113P61574 105 aa16.02■□□□□ 0.16
CPSF6-205ENST00000550075 SPINK6Q6UWN8 80 aa16.02■□□□□ 0.16
CPSF6-205ENST00000550075 TP73-AS1Q9UF72 201 aa16.02■□□□□ 0.16
CPSF6-205ENST00000550075 C22orf24Q9Y442 160 aa16.02■□□□□ 0.16
CPSF6-205ENST00000550075 PLA2G2DQ9UNK4 145 aa16.01■□□□□ 0.15
CPSF6-205ENST00000550075 IGKCP01834 107 aa16■□□□□ 0.15
CPSF6-205ENST00000550075 COA6Q5JTJ3 125 aaKnown RBP15.99■□□□□ 0.15
CPSF6-205ENST00000550075 HERV-K104P63124 156 aa15.98■□□□□ 0.15
CPSF6-205ENST00000550075 MRPL55Q7Z7F7 128 aaKnown RBP15.98■□□□□ 0.15
CPSF6-205ENST00000550075 NKAPP1Q8N9T2 125 aa15.98■□□□□ 0.15
CPSF6-205ENST00000550075 PMCHL2Q9BQD1 86 aa15.98■□□□□ 0.15
CPSF6-205ENST00000550075 PLEKHB2Q96CS7 222 aa15.97■□□□□ 0.15
CPSF6-205ENST00000550075 REG3GQ6UW15 175 aa15.96■□□□□ 0.15
CPSF6-205ENST00000550075 SND1-IT1Q9HBX3 110 aa15.96■□□□□ 0.15
CPSF6-205ENST00000550075 NDUFA12Q9UI09 145 aa15.96■□□□□ 0.15
CPSF6-205ENST00000550075 FAT3Q8TDW7 4589 aa15.96■□□□□ 0.15
CPSF6-205ENST00000550075 IGLV5-37A0A075B6J1 123 aa15.95■□□□□ 0.14
CPSF6-205ENST00000550075 SYS1-DBNDD2H3BUS1 97 aa15.95■□□□□ 0.14
CPSF6-205ENST00000550075 LEPROTO15243 131 aa15.95■□□□□ 0.14
CPSF6-205ENST00000550075 LINC00158P58513 81 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms