RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	S100A12	P80511	92 aa		7.79	□□□□□ -1.16
DDB1-223	ENST00000543658	LINC00518	Q8N0U6	118 aa		7.79	□□□□□ -1.16
DDB1-223	ENST00000543658	RYR2	Q92736	4967 aa		7.78	□□□□□ -1.16
DDB1-223	ENST00000543658	IGLV5-52	A0A0A0MRZ9	124 aa		7.78	□□□□□ -1.16
DDB1-223	ENST00000543658	MYMX	A0A1B0GTQ4	84 aa		7.78	□□□□□ -1.16
DDB1-223	ENST00000543658	KIAA0087	Q14695	138 aa		7.78	□□□□□ -1.16
DDB1-223	ENST00000543658	C2orf82	Q6UX34	121 aa		7.78	□□□□□ -1.16
DDB1-223	ENST00000543658	NDUFA12	Q9UI09	145 aa		7.78	□□□□□ -1.16
DDB1-223	ENST00000543658	PKIG	Q9Y2B9	76 aa		7.78	□□□□□ -1.16
DDB1-223	ENST00000543658	PAM16	Q9Y3D7	125 aa		7.78	□□□□□ -1.16
DDB1-223	ENST00000543658	SMIM6	P0DI80	62 aa		7.77	□□□□□ -1.17
DDB1-223	ENST00000543658	CNBP	P62633	177 aa	Known RBP	7.77	□□□□□ -1.17
DDB1-223	ENST00000543658	HERV-K104	P63124	156 aa		7.77	□□□□□ -1.17
DDB1-223	ENST00000543658	MAJIN	Q3KP22	176 aa		7.77	□□□□□ -1.17
DDB1-223	ENST00000543658	SPATA45	Q537H7	98 aa		7.77	□□□□□ -1.17
DDB1-223	ENST00000543658	ANKRD39	Q53RE8	183 aa		7.77	□□□□□ -1.17
DDB1-223	ENST00000543658		Q6ZRU5	148 aa		7.77	□□□□□ -1.17
DDB1-223	ENST00000543658	DNAH10	Q8IVF4	4471 aa		7.77	□□□□□ -1.17
DDB1-223	ENST00000543658	FRAS1	Q86XX4	4008 aa		7.76	□□□□□ -1.17
DDB1-223	ENST00000543658	TRBV30	A0A0K0K1B3	111 aa		7.76	□□□□□ -1.17
DDB1-223	ENST00000543658	ZNF815P	A8K554	130 aa		7.76	□□□□□ -1.17
DDB1-223	ENST00000543658	TSPEAR-AS2	P59090	65 aa		7.76	□□□□□ -1.17
DDB1-223	ENST00000543658	MEIG1	Q5JSS6	88 aa		7.76	□□□□□ -1.17
DDB1-223	ENST00000543658	CDPF1	Q6NVV7	123 aa		7.76	□□□□□ -1.17
DDB1-223	ENST00000543658	UNQ6190/PRO20217	Q6UXQ8	127 aa		7.76	□□□□□ -1.17
DDB1-223	ENST00000543658	IGKV2D-26	A0A0A0MRZ7	120 aa		7.75	□□□□□ -1.17
DDB1-223	ENST00000543658	ZNF625	Q96I27	306 aa	Predicted RBP	7.75	□□□□□ -1.17
DDB1-223	ENST00000543658	LINC00587	B1AMM8	73 aa		7.74	□□□□□ -1.17
DDB1-223	ENST00000543658	RNF151	Q2KHN1	245 aa		7.74	□□□□□ -1.17
DDB1-223	ENST00000543658	RPL18A	Q02543	176 aa	Known RBP	7.73	□□□□□ -1.17
DDB1-223	ENST00000543658	CIRBP	Q14011	172 aa	Known RBP	7.73	□□□□□ -1.17
DDB1-223	ENST00000543658	C10orf25	Q5T742	122 aa		7.73	□□□□□ -1.17
DDB1-223	ENST00000543658	SCGB1D4	Q6XE38	83 aa		7.73	□□□□□ -1.17
DDB1-223	ENST00000543658	C6orf48	Q9UBA6	75 aa		7.73	□□□□□ -1.17
DDB1-223	ENST00000543658	DNAH2	Q9P225	4427 aa		7.73	□□□□□ -1.17
DDB1-223	ENST00000543658	LOC107984640	A0A0U1RRK4	108 aa		7.72	□□□□□ -1.17
DDB1-223	ENST00000543658	SLPI	P03973	132 aa		7.72	□□□□□ -1.17
DDB1-223	ENST00000543658	C9orf163	Q8N9P6	203 aa		7.72	□□□□□ -1.17
DDB1-223	ENST00000543658	C12orf57	Q99622	126 aa		7.72	□□□□□ -1.17
DDB1-223	ENST00000543658	ERG28	Q9UKR5	140 aa		7.72	□□□□□ -1.17
DDB1-223	ENST00000543658	PFN2	P35080	140 aa		7.71	□□□□□ -1.18
DDB1-223	ENST00000543658	FUS	P35637	526 aa	Known RBP eCLIP	7.71	□□□□□ -1.18
DDB1-223	ENST00000543658	LINC00158	P58513	81 aa		7.71	□□□□□ -1.18
DDB1-223	ENST00000543658	KRTAP10-2	P60368	255 aa		7.71	□□□□□ -1.18
DDB1-223	ENST00000543658	COX17	Q14061	63 aa		7.71	□□□□□ -1.18
DDB1-223	ENST00000543658	PCP2	Q8IVA1	136 aa		7.71	□□□□□ -1.18
DDB1-223	ENST00000543658	TTTY13	Q9BZ97	58 aa		7.71	□□□□□ -1.18
DDB1-223	ENST00000543658	DNAH17	Q9UFH2	4485 aa		7.7	□□□□□ -1.18
DDB1-223	ENST00000543658	COX8A	P10176	69 aa		7.7	□□□□□ -1.18
DDB1-223	ENST00000543658	GCSH	P23434	173 aa		7.7	□□□□□ -1.18
DDB1-223	ENST00000543658	C9orf116	Q5BN46	136 aa	Predicted RBP	7.7	□□□□□ -1.18
DDB1-223	ENST00000543658	LINC00528	Q8N1L1	170 aa		7.7	□□□□□ -1.18
DDB1-223	ENST00000543658		A0A0J9YXY3	114 aa		7.69	□□□□□ -1.18
DDB1-223	ENST00000543658		A0A0U1RRA0	63 aa		7.69	□□□□□ -1.18
DDB1-223	ENST00000543658	C16orf90	A8MZG2	172 aa		7.69	□□□□□ -1.18
DDB1-223	ENST00000543658	NDUFC2-KCTD14	E9PQ53	114 aa		7.69	□□□□□ -1.18
DDB1-223	ENST00000543658	SLC25A34	Q6PIV7	304 aa		7.69	□□□□□ -1.18
DDB1-223	ENST00000543658	C14orf144	Q96I85	54 aa		7.69	□□□□□ -1.18
DDB1-223	ENST00000543658		A0A1B0GVY2	172 aa		7.68	□□□□□ -1.18
DDB1-223	ENST00000543658	TMEM238	C9JI98	176 aa		7.68	□□□□□ -1.18
DDB1-223	ENST00000543658	TLX1NB	P0CAT3	122 aa		7.68	□□□□□ -1.18
DDB1-223	ENST00000543658	SMIM13	P0DJ93	91 aa		7.68	□□□□□ -1.18
DDB1-223	ENST00000543658	GAGE2B	Q13066	116 aa		7.68	□□□□□ -1.18
DDB1-223	ENST00000543658	LINC01620	Q4KN68	170 aa		7.68	□□□□□ -1.18
DDB1-223	ENST00000543658	GAGE2E	Q4V326	116 aa		7.68	□□□□□ -1.18
DDB1-223	ENST00000543658	GAGE2D	Q9UEU5	116 aa		7.68	□□□□□ -1.18
DDB1-223	ENST00000543658	IGKV2-24	A0A0C4DH68	120 aa		7.67	□□□□□ -1.18
DDB1-223	ENST00000543658	TIMM17B	O60830	172 aa		7.67	□□□□□ -1.18
DDB1-223	ENST00000543658	BOD1L2	Q8IYS8	172 aa		7.67	□□□□□ -1.18
DDB1-223	ENST00000543658	MIEN1	Q9BRT3	115 aa		7.67	□□□□□ -1.18
DDB1-223	ENST00000543658	LINC00474	Q9P2X8	69 aa		7.67	□□□□□ -1.18
DDB1-223	ENST00000543658	DLEU1	O43261	78 aa		7.66	□□□□□ -1.18
DDB1-223	ENST00000543658	DPH3	Q96FX2	82 aa		7.66	□□□□□ -1.18
DDB1-223	ENST00000543658		A0A096LNI7	61 aa		7.65	□□□□□ -1.18
DDB1-223	ENST00000543658	PTTG1IP	P53801	180 aa		7.65	□□□□□ -1.18
DDB1-223	ENST00000543658		Q6ZRP5	223 aa		7.65	□□□□□ -1.18
DDB1-223	ENST00000543658	MIR7-3HG	Q8N6C7	128 aa		7.65	□□□□□ -1.18
DDB1-223	ENST00000543658	COPS9	Q8WXC6	57 aa		7.65	□□□□□ -1.18
DDB1-223	ENST00000543658	UQCR10	Q9UDW1	63 aa		7.65	□□□□□ -1.18
DDB1-223	ENST00000543658	TSTD3	H0UI37	97 aa		7.64	□□□□□ -1.19
DDB1-223	ENST00000543658	SRSF9	Q13242	221 aa	Known RBP eCLIP	7.64	□□□□□ -1.19
DDB1-223	ENST00000543658	SDIM1	Q6ZPB5	146 aa		7.64	□□□□□ -1.19
DDB1-223	ENST00000543658		A6NJY4	79 aa		7.63	□□□□□ -1.19
DDB1-223	ENST00000543658	DAND5	Q8N907	189 aa		7.63	□□□□□ -1.19
DDB1-223	ENST00000543658	PRO1933	Q9H354	126 aa		7.63	□□□□□ -1.19
DDB1-223	ENST00000543658	XAGE1A	Q9HD64	81 aa		7.63	□□□□□ -1.19
DDB1-223	ENST00000543658	FAT2	Q9NYQ8	4349 aa		7.62	□□□□□ -1.19
DDB1-223	ENST00000543658	CHTF8	P0CG12	524 aa		7.62	□□□□□ -1.19
DDB1-223	ENST00000543658	NPC2	P61916	151 aa		7.62	□□□□□ -1.19
DDB1-223	ENST00000543658		Q6ZVH6	145 aa		7.62	□□□□□ -1.19
DDB1-223	ENST00000543658	SPANXD	Q9BXN6	97 aa		7.62	□□□□□ -1.19
DDB1-223	ENST00000543658	SND1-IT1	Q9HBX3	110 aa		7.62	□□□□□ -1.19
DDB1-223	ENST00000543658	SPANXC	Q9NY87	97 aa		7.62	□□□□□ -1.19
DDB1-223	ENST00000543658	TP73-AS1	Q9UF72	201 aa		7.62	□□□□□ -1.19
DDB1-223	ENST00000543658	HNRNPA3	P51991	378 aa	Known RBP	7.61	□□□□□ -1.19
DDB1-223	ENST00000543658	KRTAP10-1	P60331	282 aa		7.61	□□□□□ -1.19
DDB1-223	ENST00000543658	HIST1H4G	Q99525	98 aa		7.61	□□□□□ -1.19
DDB1-223	ENST00000543658	SPANXB1	Q9NS25	103 aa	Predicted RBP	7.61	□□□□□ -1.19
DDB1-223	ENST00000543658	HIGD1B	Q9P298	99 aa		7.61	□□□□□ -1.19
DDB1-223	ENST00000543658	IFITM1	P13164	125 aa		7.6	□□□□□ -1.19

Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms