RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 PLECQ15149 4684 aaKnown RBP3.42□□□□□ -1.86
CLIP1-217ENST00000543205 SCGB1D4Q6XE38 83 aa3.42□□□□□ -1.86
CLIP1-217ENST00000543205 CHCHD7Q9BUK0 85 aa3.42□□□□□ -1.86
CLIP1-217ENST00000543205 LAMTOR2Q9Y2Q5 125 aa3.42□□□□□ -1.86
CLIP1-217ENST00000543205 FABP9Q0Z7S8 132 aa3.41□□□□□ -1.86
CLIP1-217ENST00000543205 KRTAP1-5Q9BYS1 174 aa3.41□□□□□ -1.86
CLIP1-217ENST00000543205 TRAPPC1Q9Y5R8 145 aa3.41□□□□□ -1.86
CLIP1-217ENST00000543205 ANGP03950 147 aaKnown RBP3.41□□□□□ -1.86
CLIP1-217ENST00000543205 MPV17L2Q567V2 206 aa3.41□□□□□ -1.86
CLIP1-217ENST00000543205 AMMECR1LQ6DCA0 310 aa3.41□□□□□ -1.86
CLIP1-217ENST00000543205 SMIM2Q9BVW6 85 aa3.41□□□□□ -1.86
CLIP1-217ENST00000543205 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.4□□□□□ -1.87
CLIP1-217ENST00000543205 IGKV2-29A2NJV5 120 aaPredicted RBP3.4□□□□□ -1.87
CLIP1-217ENST00000543205 IBA57-AS1B1ANH7 110 aa3.4□□□□□ -1.87
CLIP1-217ENST00000543205 H7C423 109 aa3.4□□□□□ -1.87
CLIP1-217ENST00000543205 PRR4Q16378 134 aa3.4□□□□□ -1.87
CLIP1-217ENST00000543205 KLK12Q9UKR0 248 aa3.4□□□□□ -1.87
CLIP1-217ENST00000543205 A0A1B0GUV1 79 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 CRPP02741 224 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 CXCL6P80162 114 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 Q0VG73 95 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 Q8N976 141 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 RMI2Q96E14 147 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 TMEM101Q96IK0 257 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 YPEL4Q96NS1 127 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 NXT2Q9NPJ8 142 aaKnown RBP3.39□□□□□ -1.87
CLIP1-217ENST00000543205 ZNF706Q9Y5V0 76 aaPredicted RBP3.39□□□□□ -1.87
CLIP1-217ENST00000543205 A0A087X002 238 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 NDUFC2-KCTD14E9PQ53 114 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 RTL8CO15255 209 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 PSCAO43653 123 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 ZNF25P17030 456 aaPredicted RBP3.39□□□□□ -1.87
CLIP1-217ENST00000543205 DDTP30046 118 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 MP68P56378 58 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 BATFQ16520 125 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 LINC00269Q8N2A0 174 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 Q8N8P6 123 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 UBE2WQ96B02 151 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 HSPB8Q9UJY1 196 aa3.39□□□□□ -1.87
CLIP1-217ENST00000543205 IGLV4-60A0A075B6I1 120 aa3.38□□□□□ -1.87
CLIP1-217ENST00000543205 SCO1O75880 301 aa3.38□□□□□ -1.87
CLIP1-217ENST00000543205 IFI27P40305 119 aaPredicted RBP3.38□□□□□ -1.87
CLIP1-217ENST00000543205 ORMDL2Q53FV1 153 aa3.38□□□□□ -1.87
CLIP1-217ENST00000543205 ANKRD29Q8N6D5 301 aa3.38□□□□□ -1.87
CLIP1-217ENST00000543205 C20orf203Q8NBC4 194 aa3.38□□□□□ -1.87
CLIP1-217ENST00000543205 Q8NBF4 154 aa3.38□□□□□ -1.87
CLIP1-217ENST00000543205 OR5A1Q8NGJ0 315 aa3.38□□□□□ -1.87
CLIP1-217ENST00000543205 IGKV2D-24A0A075B6R9 120 aa3.37□□□□□ -1.87
CLIP1-217ENST00000543205 IGKV3OR2-268A0A0C4DH90 116 aa3.37□□□□□ -1.87
CLIP1-217ENST00000543205 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.37□□□□□ -1.87
CLIP1-217ENST00000543205 K7EMI3 77 aa3.37□□□□□ -1.87
CLIP1-217ENST00000543205 HERVK_113P63121 156 aa3.37□□□□□ -1.87
CLIP1-217ENST00000543205 MIAQ16674 131 aa3.37□□□□□ -1.87
CLIP1-217ENST00000543205 CLPSL2Q6UWE3 100 aa3.37□□□□□ -1.87
CLIP1-217ENST00000543205 ENHOQ6UWT2 76 aa3.37□□□□□ -1.87
CLIP1-217ENST00000543205 FA2HQ7L5A8 372 aa3.37□□□□□ -1.87
CLIP1-217ENST00000543205 SMIM29Q86T20 159 aa3.37□□□□□ -1.87
CLIP1-217ENST00000543205 SPANXA1Q9NS26 97 aa3.37□□□□□ -1.87
CLIP1-217ENST00000543205 KMT2AQ03164 3969 aa3.37□□□□□ -1.87
CLIP1-217ENST00000543205 COLCA2A8K830 154 aa3.37□□□□□ -1.87
CLIP1-217ENST00000543205 KRTAP29-1A8MX34 341 aaPredicted RBP3.37□□□□□ -1.87
CLIP1-217ENST00000543205 KRTAP4-16G5E9R7 235 aaPredicted RBP3.37□□□□□ -1.87
CLIP1-217ENST00000543205 RPL39P62891 51 aaKnown RBP3.37□□□□□ -1.87
CLIP1-217ENST00000543205 Q6ZRN7 208 aaPredicted RBP3.37□□□□□ -1.87
CLIP1-217ENST00000543205 ZNF664Q8N3J9 261 aa3.37□□□□□ -1.87
CLIP1-217ENST00000543205 Q8N9P0 234 aaPredicted RBP3.37□□□□□ -1.87
CLIP1-217ENST00000543205 C14orf144Q96I85 54 aa3.37□□□□□ -1.87
CLIP1-217ENST00000543205 ANAPC13Q9BS18 74 aa3.37□□□□□ -1.87
CLIP1-217ENST00000543205 PRR34Q9NV39 138 aa3.37□□□□□ -1.87
CLIP1-217ENST00000543205 UBE2D4Q9Y2X8 147 aa3.37□□□□□ -1.87
CLIP1-217ENST00000543205 FRAS1Q86XX4 4008 aa3.37□□□□□ -1.87
CLIP1-217ENST00000543205 TRGC2P03986 189 aa3.36□□□□□ -1.87
CLIP1-217ENST00000543205 C2orf66Q6UXQ4 117 aa3.36□□□□□ -1.87
CLIP1-217ENST00000543205 CARD19Q96LW7 228 aa3.36□□□□□ -1.87
CLIP1-217ENST00000543205 TIMM21Q9BVV7 248 aa3.36□□□□□ -1.87
CLIP1-217ENST00000543205 CDC42SE2Q9NRR3 84 aa3.36□□□□□ -1.87
CLIP1-217ENST00000543205 CYSLTR1Q9Y271 337 aa3.36□□□□□ -1.87
CLIP1-217ENST00000543205 VPS13DQ5THJ4 4388 aa3.36□□□□□ -1.87
CLIP1-217ENST00000543205 IGLV10-54A0A075B6I4 117 aa3.36□□□□□ -1.87
CLIP1-217ENST00000543205 LINC01546A6NGU7 62 aa3.36□□□□□ -1.87
CLIP1-217ENST00000543205 INAFM2P0DMQ5 153 aa3.36□□□□□ -1.87
CLIP1-217ENST00000543205 C18orf32Q8TCD1 76 aa3.36□□□□□ -1.87
CLIP1-217ENST00000543205 HECTD4Q9Y4D8 3996 aa3.35□□□□□ -1.87
CLIP1-217ENST00000543205 DNAH6Q9C0G6 4158 aa3.35□□□□□ -1.87
CLIP1-217ENST00000543205 A0A0J9YXY3 114 aa3.35□□□□□ -1.87
CLIP1-217ENST00000543205 LINC00313P59037 77 aa3.35□□□□□ -1.87
CLIP1-217ENST00000543205 MRPS36P82909 103 aaKnown RBP3.35□□□□□ -1.87
CLIP1-217ENST00000543205 SS18Q15532 418 aa3.35□□□□□ -1.87
CLIP1-217ENST00000543205 RNASE13Q5GAN3 156 aaKnown RBP3.35□□□□□ -1.87
CLIP1-217ENST00000543205 TOMM6Q96B49 74 aa3.35□□□□□ -1.87
CLIP1-217ENST00000543205 A0A087WTM6 91 aa3.34□□□□□ -1.87
CLIP1-217ENST00000543205 TRAV13-1A0A0B4J241 112 aa3.34□□□□□ -1.87
CLIP1-217ENST00000543205 LINC00959A0A1B0GUT2 108 aa3.34□□□□□ -1.87
CLIP1-217ENST00000543205 LINC01549A6NIU2 74 aa3.34□□□□□ -1.87
CLIP1-217ENST00000543205 J3KT08 172 aa3.34□□□□□ -1.87
CLIP1-217ENST00000543205 HRCT1Q6UXD1 115 aa3.34□□□□□ -1.87
CLIP1-217ENST00000543205 Q6ZUT4 128 aa3.34□□□□□ -1.87
CLIP1-217ENST00000543205 BAGE3Q86Y29 109 aa3.34□□□□□ -1.87
CLIP1-217ENST00000543205 TMEM141Q96I45 108 aa3.34□□□□□ -1.87
CLIP1-217ENST00000543205 SCGB3A1Q96QR1 104 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms