RNA–Protein interactions for RNA: ENST00000530567.1

CAPN1-220, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 1,415 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-220ENST00000530567 HIST3H2BBQ8N257 126 aa13.65□□□□□ -0.22
CAPN1-220ENST00000530567 PMCHL2Q9BQD1 86 aa13.65□□□□□ -0.22
CAPN1-220ENST00000530567 C6orf48Q9UBA6 75 aa13.65□□□□□ -0.22
CAPN1-220ENST00000530567 COX7B2Q8TF08 81 aa13.64□□□□□ -0.23
CAPN1-220ENST00000530567 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.64□□□□□ -0.23
CAPN1-220ENST00000530567 HAMPP81172 84 aa13.64□□□□□ -0.23
CAPN1-220ENST00000530567 RNF151Q2KHN1 245 aa13.64□□□□□ -0.23
CAPN1-220ENST00000530567 C6orf226Q5I0X4 101 aa13.64□□□□□ -0.23
CAPN1-220ENST00000530567 TMEM223A0PJW6 202 aa13.63□□□□□ -0.23
CAPN1-220ENST00000530567 C3orf79P0CE67 100 aa13.63□□□□□ -0.23
CAPN1-220ENST00000530567 CHTF8P0CG12 524 aa13.63□□□□□ -0.23
CAPN1-220ENST00000530567 CIRBPQ14011 172 aaKnown RBP13.63□□□□□ -0.23
CAPN1-220ENST00000530567 PLNP26678 52 aa13.62□□□□□ -0.23
CAPN1-220ENST00000530567 DPM2O94777 84 aa13.61□□□□□ -0.23
CAPN1-220ENST00000530567 S100A6P06703 90 aa13.61□□□□□ -0.23
CAPN1-220ENST00000530567 CKS1BP61024 79 aa13.61□□□□□ -0.23
CAPN1-220ENST00000530567 A0A096LNI7 61 aa13.6□□□□□ -0.23
CAPN1-220ENST00000530567 TRBV30A0A0K0K1B3 111 aa13.6□□□□□ -0.23
CAPN1-220ENST00000530567 CXCL5P42830 114 aa13.6□□□□□ -0.23
CAPN1-220ENST00000530567 LINC01545Q5VT33 79 aa13.6□□□□□ -0.23
CAPN1-220ENST00000530567 PET117Q6UWS5 81 aa13.6□□□□□ -0.23
CAPN1-220ENST00000530567 HIST1H2BLQ99880 126 aa13.6□□□□□ -0.23
CAPN1-220ENST00000530567 SCXQ7RTU7 201 aa13.59□□□□□ -0.23
CAPN1-220ENST00000530567 SPACA4Q8TDM5 124 aa13.59□□□□□ -0.23
CAPN1-220ENST00000530567 LOC107984640A0A0U1RRK4 108 aa13.58□□□□□ -0.24
CAPN1-220ENST00000530567 IGKCP01834 107 aa13.58□□□□□ -0.24
CAPN1-220ENST00000530567 KRTDAPP60985 99 aa13.58□□□□□ -0.24
CAPN1-220ENST00000530567 C5orf52A6NGY3 159 aa13.57□□□□□ -0.24
CAPN1-220ENST00000530567 SNRPEP62304 92 aaKnown RBP13.57□□□□□ -0.24
CAPN1-220ENST00000530567 C9orf116Q5BN46 136 aaPredicted RBP13.57□□□□□ -0.24
CAPN1-220ENST00000530567 PKIGQ9Y2B9 76 aa13.57□□□□□ -0.24
CAPN1-220ENST00000530567 IGKV2-24A0A0C4DH68 120 aa13.56□□□□□ -0.24
CAPN1-220ENST00000530567 TLX1NBP0CAT3 122 aa13.56□□□□□ -0.24
CAPN1-220ENST00000530567 S100A2P29034 98 aa13.56□□□□□ -0.24
CAPN1-220ENST00000530567 PTTG1IPP53801 180 aa13.56□□□□□ -0.24
CAPN1-220ENST00000530567 CIRBP-AS1Q8TBR5 109 aa13.56□□□□□ -0.24
CAPN1-220ENST00000530567 KRTAP17-1Q9BYP8 105 aa13.56□□□□□ -0.24
CAPN1-220ENST00000530567 HERC2O95714 4834 aa13.55□□□□□ -0.24
CAPN1-220ENST00000530567 RPL18AQ02543 176 aaKnown RBP13.54□□□□□ -0.24
CAPN1-220ENST00000530567 Q6ZRP5 223 aa13.54□□□□□ -0.24
CAPN1-220ENST00000530567 GAGE2BQ13066 116 aa13.53□□□□□ -0.24
CAPN1-220ENST00000530567 MAJINQ3KP22 176 aa13.52□□□□□ -0.25
CAPN1-220ENST00000530567 ZNF625Q96I27 306 aaPredicted RBP13.52□□□□□ -0.25
CAPN1-220ENST00000530567 A0A087WYN8 130 aa13.51□□□□□ -0.25
CAPN1-220ENST00000530567 NDUFC2-KCTD14E9PQ53 114 aa13.51□□□□□ -0.25
CAPN1-220ENST00000530567 TSPEAR-AS2P59090 65 aa13.51□□□□□ -0.25
CAPN1-220ENST00000530567 LINC00474Q9P2X8 69 aa13.5□□□□□ -0.25
CAPN1-220ENST00000530567 PLAC8Q9NZF1 115 aa13.49□□□□□ -0.25
CAPN1-220ENST00000530567 LEPROTO15243 131 aa13.48□□□□□ -0.25
CAPN1-220ENST00000530567 HERVK_113P61574 105 aa13.48□□□□□ -0.25
CAPN1-220ENST00000530567 FAT1Q14517 4588 aa13.48□□□□□ -0.25
CAPN1-220ENST00000530567 STPG4Q8N801 248 aa13.47□□□□□ -0.25
CAPN1-220ENST00000530567 C20orf202A1L168 122 aa13.47□□□□□ -0.25
CAPN1-220ENST00000530567 SMR3BP02814 79 aaPredicted RBP13.47□□□□□ -0.25
CAPN1-220ENST00000530567 GAGE2EQ4V326 116 aa13.47□□□□□ -0.25
CAPN1-220ENST00000530567 SFTA2Q6UW10 78 aa13.47□□□□□ -0.25
CAPN1-220ENST00000530567 GAGE2DQ9UEU5 116 aa13.47□□□□□ -0.25
CAPN1-220ENST00000530567 E9PLD3 99 aa13.46□□□□□ -0.26
CAPN1-220ENST00000530567 PLEKHB2Q96CS7 222 aa13.46□□□□□ -0.26
CAPN1-220ENST00000530567 DPH3Q96FX2 82 aa13.46□□□□□ -0.26
CAPN1-220ENST00000530567 EPM2AB3EWF7 344 aa13.45□□□□□ -0.26
CAPN1-220ENST00000530567 C9orf129Q5T035 196 aaKnown RBP13.45□□□□□ -0.26
CAPN1-220ENST00000530567 A0A1W2PNN7 141 aa13.44□□□□□ -0.26
CAPN1-220ENST00000530567 J3QQQ9 107 aa13.44□□□□□ -0.26
CAPN1-220ENST00000530567 Q8N1X5 172 aa13.44□□□□□ -0.26
CAPN1-220ENST00000530567 NDUFA12Q9UI09 145 aa13.44□□□□□ -0.26
CAPN1-220ENST00000530567 ERG28Q9UKR5 140 aa13.44□□□□□ -0.26
CAPN1-220ENST00000530567 TMA7Q9Y2S6 64 aaKnown RBP13.43□□□□□ -0.26
CAPN1-220ENST00000530567 ATOH7Q8N100 152 aa13.42□□□□□ -0.26
CAPN1-220ENST00000530567 FAM168BA1KXE4 195 aa13.41□□□□□ -0.26
CAPN1-220ENST00000530567 PFN2P35080 140 aa13.41□□□□□ -0.26
CAPN1-220ENST00000530567 KRTAP7-1Q8IUC3 87 aa13.41□□□□□ -0.26
CAPN1-220ENST00000530567 XAGE1AQ9HD64 81 aa13.41□□□□□ -0.26
CAPN1-220ENST00000530567 IGKV2D-26A0A0A0MRZ7 120 aa13.39□□□□□ -0.27
CAPN1-220ENST00000530567 HERV-K104P63124 156 aa13.39□□□□□ -0.27
CAPN1-220ENST00000530567 LINC00528Q8N1L1 170 aa13.39□□□□□ -0.27
CAPN1-220ENST00000530567 MYMXA0A1B0GTQ4 84 aa13.39□□□□□ -0.27
CAPN1-220ENST00000530567 LGALS3P17931 250 aaKnown RBP13.39□□□□□ -0.27
CAPN1-220ENST00000530567 COX17Q14061 63 aa13.39□□□□□ -0.27
CAPN1-220ENST00000530567 NMUP48645 174 aa13.38□□□□□ -0.27
CAPN1-220ENST00000530567 AKR1D1P51857 326 aa13.38□□□□□ -0.27
CAPN1-220ENST00000530567 ANKRD39Q53RE8 183 aa13.37□□□□□ -0.27
CAPN1-220ENST00000530567 KRTAP4-5Q9BYR2 181 aa13.37□□□□□ -0.27
CAPN1-220ENST00000530567 Q5VSD8 79 aa13.36□□□□□ -0.27
CAPN1-220ENST00000530567 SMIM13P0DJ93 91 aa13.35□□□□□ -0.27
CAPN1-220ENST00000530567 SERTAD4-AS1Q5TG53 156 aa13.35□□□□□ -0.27
CAPN1-220ENST00000530567 FAM19A5Q7Z5A7 132 aaPredicted RBP13.35□□□□□ -0.27
CAPN1-220ENST00000530567 SND1-IT1Q9HBX3 110 aa13.35□□□□□ -0.27
CAPN1-220ENST00000530567 A0A0U1RRA0 63 aa13.33□□□□□ -0.28
CAPN1-220ENST00000530567 LINC00158P58513 81 aa13.33□□□□□ -0.28
CAPN1-220ENST00000530567 MEIG1Q5JSS6 88 aa13.33□□□□□ -0.28
CAPN1-220ENST00000530567 TTTY13Q9BZ97 58 aa13.33□□□□□ -0.28
CAPN1-220ENST00000530567 VPS13BQ7Z7G8 4022 aa13.33□□□□□ -0.28
CAPN1-220ENST00000530567 KRTAP10-4P60372 401 aaPredicted RBP13.31□□□□□ -0.28
CAPN1-220ENST00000530567 PHF5AQ7RTV0 110 aaKnown RBP13.31□□□□□ -0.28
CAPN1-220ENST00000530567 FAM229AH3BQW9 127 aa13.3□□□□□ -0.28
CAPN1-220ENST00000530567 SCGB1D1O95968 90 aa13.3□□□□□ -0.28
CAPN1-220ENST00000530567 PLA2G2DQ9UNK4 145 aa13.3□□□□□ -0.28
CAPN1-220ENST00000530567 A0A0J9YXY3 114 aa13.3□□□□□ -0.28
CAPN1-220ENST00000530567 MIR7-3HGQ8N6C7 128 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms