RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 EIF4EBP1Q13541 118 aaPredicted RBP3.91□□□□□ -1.78
NUP54-218ENST00000515460 Q1RN00 199 aa3.91□□□□□ -1.78
NUP54-218ENST00000515460 Q6ZVQ6 151 aa3.91□□□□□ -1.78
NUP54-218ENST00000515460 Q8N2B8 174 aa3.91□□□□□ -1.78
NUP54-218ENST00000515460 KRTAP4-4Q9BYR3 166 aa3.91□□□□□ -1.78
NUP54-218ENST00000515460 LOC389332A0A1B0GUA5 103 aa3.9□□□□□ -1.79
NUP54-218ENST00000515460 TMEM223A0PJW6 202 aa3.9□□□□□ -1.79
NUP54-218ENST00000515460 A6NDX4 124 aa3.9□□□□□ -1.79
NUP54-218ENST00000515460 C8orf87E5RJ46 101 aa3.9□□□□□ -1.79
NUP54-218ENST00000515460 COX7A2P2O60397 106 aa3.9□□□□□ -1.79
NUP54-218ENST00000515460 BLCAPP62952 87 aa3.9□□□□□ -1.79
NUP54-218ENST00000515460 RHOHQ15669 191 aa3.9□□□□□ -1.79
NUP54-218ENST00000515460 SFTA2Q6UW10 78 aa3.9□□□□□ -1.79
NUP54-218ENST00000515460 C11orf68Q9H3H3 251 aaKnown RBP3.9□□□□□ -1.79
NUP54-218ENST00000515460 UBE2D4Q9Y2X8 147 aa3.9□□□□□ -1.79
NUP54-218ENST00000515460 A0A0J9YX75 114 aa3.89□□□□□ -1.79
NUP54-218ENST00000515460 FAM223BA6NKX1 122 aa3.89□□□□□ -1.79
NUP54-218ENST00000515460 K7EMT4 169 aa3.89□□□□□ -1.79
NUP54-218ENST00000515460 CCL3L1P16619 93 aa3.89□□□□□ -1.79
NUP54-218ENST00000515460 SS18Q15532 418 aa3.89□□□□□ -1.79
NUP54-218ENST00000515460 MRPL51Q4U2R6 128 aaKnown RBP3.89□□□□□ -1.79
NUP54-218ENST00000515460 KRTAP5-4Q6L8H1 288 aa3.89□□□□□ -1.79
NUP54-218ENST00000515460 FAM223AQ8IWN6 122 aa3.89□□□□□ -1.79
NUP54-218ENST00000515460 C20orf197Q8N268 126 aa3.89□□□□□ -1.79
NUP54-218ENST00000515460 DYNLRB2Q8TF09 96 aa3.89□□□□□ -1.79
NUP54-218ENST00000515460 B9D2Q9BPU9 175 aa3.89□□□□□ -1.79
NUP54-218ENST00000515460 Q9H3A6 140 aa3.89□□□□□ -1.79
NUP54-218ENST00000515460 ICOSQ9Y6W8 199 aa3.89□□□□□ -1.79
NUP54-218ENST00000515460 IGKV1-6A0A0C4DH72 117 aa3.88□□□□□ -1.79
NUP54-218ENST00000515460 C17orf98A8MV24 154 aa3.88□□□□□ -1.79
NUP54-218ENST00000515460 ODF3BA8MYP8 253 aa3.88□□□□□ -1.79
NUP54-218ENST00000515460 SMIM1B2RUZ4 78 aa3.88□□□□□ -1.79
NUP54-218ENST00000515460 ZNF73O43830 326 aaPredicted RBP3.88□□□□□ -1.79
NUP54-218ENST00000515460 ARMS2P0C7Q2 107 aa3.88□□□□□ -1.79
NUP54-218ENST00000515460 COX7A1P24310 79 aa3.88□□□□□ -1.79
NUP54-218ENST00000515460 CD24P25063 80 aa3.88□□□□□ -1.79
NUP54-218ENST00000515460 ESRGQ1W209 222 aa3.88□□□□□ -1.79
NUP54-218ENST00000515460 PHF5AQ7RTV0 110 aaKnown RBP3.88□□□□□ -1.79
NUP54-218ENST00000515460 Q86TA4 180 aa3.88□□□□□ -1.79
NUP54-218ENST00000515460 C6orf223Q8N319 242 aa3.88□□□□□ -1.79
NUP54-218ENST00000515460 LITAFQ99732 161 aa3.88□□□□□ -1.79
NUP54-218ENST00000515460 TMEM30CPA0ZSE6 113 aa3.87□□□□□ -1.79
NUP54-218ENST00000515460 SDHAF1A6NFY7 115 aa3.87□□□□□ -1.79
NUP54-218ENST00000515460 J3QT63 122 aa3.87□□□□□ -1.79
NUP54-218ENST00000515460 M0R378 163 aa3.87□□□□□ -1.79
NUP54-218ENST00000515460 NDUFA3O95167 84 aa3.87□□□□□ -1.79
NUP54-218ENST00000515460 DNAL4O96015 105 aa3.87□□□□□ -1.79
NUP54-218ENST00000515460 LAGE3Q14657 143 aa3.87□□□□□ -1.79
NUP54-218ENST00000515460 Q1T7F1 81 aa3.87□□□□□ -1.79
NUP54-218ENST00000515460 PIGYQ3MUY2 71 aa3.87□□□□□ -1.79
NUP54-218ENST00000515460 C10orf99Q6UWK7 81 aa3.87□□□□□ -1.79
NUP54-218ENST00000515460 LYPD5Q6UWN5 251 aa3.87□□□□□ -1.79
NUP54-218ENST00000515460 UNQ9165/PRO28630Q6UXU0 137 aa3.87□□□□□ -1.79
NUP54-218ENST00000515460 LCA10Q71F78 164 aa3.87□□□□□ -1.79
NUP54-218ENST00000515460 FAM167A-AS1Q96KT0 104 aa3.87□□□□□ -1.79
NUP54-218ENST00000515460 OVOL2Q9BRP0 275 aa3.87□□□□□ -1.79
NUP54-218ENST00000515460 LINC00588Q9Y4M8 146 aa3.87□□□□□ -1.79
NUP54-218ENST00000515460 TMEM256-PLSCR3K7ERE1 68 aa3.86□□□□□ -1.79
NUP54-218ENST00000515460 ERC2-IT1O76042 136 aa3.86□□□□□ -1.79
NUP54-218ENST00000515460 IGHV1-8P0DP01 117 aa3.86□□□□□ -1.79
NUP54-218ENST00000515460 EGFEM1PQ0D2K5 195 aa3.86□□□□□ -1.79
NUP54-218ENST00000515460 TOMM6Q96B49 74 aa3.86□□□□□ -1.79
NUP54-218ENST00000515460 LINC00474Q9P2X8 69 aa3.86□□□□□ -1.79
NUP54-218ENST00000515460 VPS13DQ5THJ4 4388 aa3.85□□□□□ -1.79
NUP54-218ENST00000515460 IGKV1-27A0A075B6S5 117 aa3.85□□□□□ -1.79
NUP54-218ENST00000515460 C11orf86A6NJI1 115 aa3.85□□□□□ -1.79
NUP54-218ENST00000515460 KRTAP5-9P26371 169 aa3.85□□□□□ -1.79
NUP54-218ENST00000515460 LCE3CQ5T5A8 94 aa3.85□□□□□ -1.79
NUP54-218ENST00000515460 MINOS1Q5TGZ0 78 aa3.85□□□□□ -1.79
NUP54-218ENST00000515460 Q8IYB0 196 aa3.85□□□□□ -1.79
NUP54-218ENST00000515460 THAP8Q8NA92 274 aa3.85□□□□□ -1.79
NUP54-218ENST00000515460 FXYD5Q96DB9 178 aa3.85□□□□□ -1.79
NUP54-218ENST00000515460 TIMM17AQ99595 171 aa3.85□□□□□ -1.79
NUP54-218ENST00000515460 Q9H8V8 135 aa3.85□□□□□ -1.79
NUP54-218ENST00000515460 MINOS1-NBL1R4GNA1 71 aa3.85□□□□□ -1.79
NUP54-218ENST00000515460 DNAH2Q9P225 4427 aa3.85□□□□□ -1.79
NUP54-218ENST00000515460 FSIP2Q5CZC0 6907 aa3.85□□□□□ -1.79
NUP54-218ENST00000515460 APOBP04114 4563 aaKnown RBP3.84□□□□□ -1.79
NUP54-218ENST00000515460 IGLV2-18A0A075B6J9 118 aa3.84□□□□□ -1.79
NUP54-218ENST00000515460 IGKV1-12A0A0C4DH73 117 aa3.84□□□□□ -1.79
NUP54-218ENST00000515460 F8WEM9 126 aa3.84□□□□□ -1.79
NUP54-218ENST00000515460 SH2D1AO60880 128 aa3.84□□□□□ -1.79
NUP54-218ENST00000515460 IGKV1D-12P01611 117 aa3.84□□□□□ -1.79
NUP54-218ENST00000515460 IGLV1-47P01700 117 aa3.84□□□□□ -1.79
NUP54-218ENST00000515460 CXCL6P80162 114 aa3.84□□□□□ -1.79
NUP54-218ENST00000515460 C10orf113Q5VZT2 155 aa3.84□□□□□ -1.79
NUP54-218ENST00000515460 LINC00322Q6ZN03 302 aaPredicted RBP3.84□□□□□ -1.79
NUP54-218ENST00000515460 C7orf65Q6ZTY9 151 aa3.84□□□□□ -1.79
NUP54-218ENST00000515460 SCGB3A1Q96QR1 104 aa3.84□□□□□ -1.79
NUP54-218ENST00000515460 CNFNQ9BYD5 112 aa3.84□□□□□ -1.79
NUP54-218ENST00000515460 TET2Q6N021 2002 aaPredicted RBP3.83□□□□□ -1.8
NUP54-218ENST00000515460 IGKV3D-20A0A0C4DH25 116 aa3.83□□□□□ -1.8
NUP54-218ENST00000515460 A0A1B0GVY2 172 aa3.83□□□□□ -1.8
NUP54-218ENST00000515460 M0R3E3 92 aa3.83□□□□□ -1.8
NUP54-218ENST00000515460 COX7A2LO14548 114 aa3.83□□□□□ -1.8
NUP54-218ENST00000515460 UBE2AP49459 152 aa3.83□□□□□ -1.8
NUP54-218ENST00000515460 COX8CQ7Z4L0 72 aa3.83□□□□□ -1.8
NUP54-218ENST00000515460 ZNF491Q8N8L2 437 aa3.83□□□□□ -1.8
NUP54-218ENST00000515460 OPRPNQ99935 248 aaPredicted RBP3.83□□□□□ -1.8
NUP54-218ENST00000515460 DPM3Q9P2X0 92 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms