RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 UQCR11O14957 56 aa8.01□□□□□ -1.13
LIMCH1-217ENST00000512946 PLA2G5P39877 138 aa8.01□□□□□ -1.13
LIMCH1-217ENST00000512946 PRRC2AP48634 2157 aaKnown RBP8□□□□□ -1.13
LIMCH1-217ENST00000512946 PLA2G2AP14555 144 aa8□□□□□ -1.13
LIMCH1-217ENST00000512946 LOC101927531A0A1B0GV80 90 aa8□□□□□ -1.13
LIMCH1-217ENST00000512946 C6orf223Q8N319 242 aa8□□□□□ -1.13
LIMCH1-217ENST00000512946 RIF1Q5UIP0 2472 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-217ENST00000512946 CIRBP-AS1Q8TBR5 109 aa7.99□□□□□ -1.13
LIMCH1-217ENST00000512946 C9orf116Q5BN46 136 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-217ENST00000512946 WIPF1O43516 503 aa7.98□□□□□ -1.13
LIMCH1-217ENST00000512946 TANC1Q9C0D5 1861 aa7.98□□□□□ -1.13
LIMCH1-217ENST00000512946 Q6ZQT0 140 aa7.98□□□□□ -1.13
LIMCH1-217ENST00000512946 KLKP1Q107X0 134 aa7.98□□□□□ -1.13
LIMCH1-217ENST00000512946 Q8NBF4 154 aa7.97□□□□□ -1.13
LIMCH1-217ENST00000512946 PTPRQQ9UMZ3 2332 aa7.97□□□□□ -1.13
LIMCH1-217ENST00000512946 PLXND1Q9Y4D7 1925 aa7.96□□□□□ -1.13
LIMCH1-217ENST00000512946 IGLV4-60A0A075B6I1 120 aa7.96□□□□□ -1.13
LIMCH1-217ENST00000512946 PRR3P79522 188 aaKnown RBP7.96□□□□□ -1.13
LIMCH1-217ENST00000512946 FAM19A4Q96LR4 140 aa7.96□□□□□ -1.14
LIMCH1-217ENST00000512946 PRUNE2Q8WUY3 3088 aa7.96□□□□□ -1.14
LIMCH1-217ENST00000512946 TANC2Q9HCD6 1990 aa7.96□□□□□ -1.14
LIMCH1-217ENST00000512946 FRMPD3Q5JV73 1810 aa7.95□□□□□ -1.14
LIMCH1-217ENST00000512946 IGLV5-45A0A087WSX0 123 aa7.95□□□□□ -1.14
LIMCH1-217ENST00000512946 NCOA6Q14686 2063 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-217ENST00000512946 PRLHP81277 87 aa7.95□□□□□ -1.14
LIMCH1-217ENST00000512946 MOBPQ13875 183 aa7.95□□□□□ -1.14
LIMCH1-217ENST00000512946 LINC01006Q8NI28 216 aa7.95□□□□□ -1.14
LIMCH1-217ENST00000512946 FNDC1Q4ZHG4 1894 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-217ENST00000512946 FHL2Q14192 279 aa7.94□□□□□ -1.14
LIMCH1-217ENST00000512946 KIAA1671Q9BY89 1806 aa7.94□□□□□ -1.14
LIMCH1-217ENST00000512946 CRIPTQ9P021 101 aa7.93□□□□□ -1.14
LIMCH1-217ENST00000512946 A8MUN3 132 aa7.93□□□□□ -1.14
LIMCH1-217ENST00000512946 KIAA0087Q14695 138 aa7.93□□□□□ -1.14
LIMCH1-217ENST00000512946 IGKV2D-30A0A075B6S6 120 aa7.93□□□□□ -1.14
LIMCH1-217ENST00000512946 IGKV2-30P06310 120 aa7.93□□□□□ -1.14
LIMCH1-217ENST00000512946 PLXNB3Q9ULL4 1909 aa7.93□□□□□ -1.14
LIMCH1-217ENST00000512946 Q9UF83 564 aa7.92□□□□□ -1.14
LIMCH1-217ENST00000512946 SMCR5Q8TEV8 140 aa7.92□□□□□ -1.14
LIMCH1-217ENST00000512946 C2CD3Q4AC94 2353 aa7.92□□□□□ -1.14
LIMCH1-217ENST00000512946 TM2D3Q9BRN9 247 aa7.92□□□□□ -1.14
LIMCH1-217ENST00000512946 C11orf71Q6IPW1 123 aa7.91□□□□□ -1.14
LIMCH1-217ENST00000512946 GPR179Q6PRD1 2367 aa7.91□□□□□ -1.14
LIMCH1-217ENST00000512946 KIF25-AS1Q9Y6Z4 181 aa7.91□□□□□ -1.14
LIMCH1-217ENST00000512946 ODF3L2Q3SX64 289 aa7.9□□□□□ -1.14
LIMCH1-217ENST00000512946 HIVEP2P31629 2446 aa7.9□□□□□ -1.14
LIMCH1-217ENST00000512946 BDP1A6H8Y1 2624 aa7.9□□□□□ -1.14
LIMCH1-217ENST00000512946 IGHV3OR16-9A0A0B4J2B5 98 aa7.9□□□□□ -1.14
LIMCH1-217ENST00000512946 LINC01600Q96MT4 127 aa7.9□□□□□ -1.14
LIMCH1-217ENST00000512946 LINC00336Q6ZUF6 198 aa7.9□□□□□ -1.15
LIMCH1-217ENST00000512946 OTOGLQ3ZCN5 2332 aa7.9□□□□□ -1.15
LIMCH1-217ENST00000512946 SSBP3-AS1Q7Z2R9 100 aa7.89□□□□□ -1.15
LIMCH1-217ENST00000512946 COA5Q86WW8 74 aa7.89□□□□□ -1.15
LIMCH1-217ENST00000512946 TECTAO75443 2155 aa7.89□□□□□ -1.15
LIMCH1-217ENST00000512946 UNC80Q8N2C7 3258 aa7.89□□□□□ -1.15
LIMCH1-217ENST00000512946 TRBV7-4A0A0J9YYF1 115 aa7.89□□□□□ -1.15
LIMCH1-217ENST00000512946 ANKHD1Q8IWZ3 2542 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-217ENST00000512946 FAM229AH3BQW9 127 aa7.88□□□□□ -1.15
LIMCH1-217ENST00000512946 DEFB116Q30KQ4 102 aa7.88□□□□□ -1.15
LIMCH1-217ENST00000512946 MDFIQ99750 246 aa7.88□□□□□ -1.15
LIMCH1-217ENST00000512946 BPTFQ12830 3046 aa7.88□□□□□ -1.15
LIMCH1-217ENST00000512946 NUPR2A6NF83 97 aa7.88□□□□□ -1.15
LIMCH1-217ENST00000512946 ADAMTS9Q9P2N4 1935 aa7.88□□□□□ -1.15
LIMCH1-217ENST00000512946 CDH23Q9H251 3354 aa7.87□□□□□ -1.15
LIMCH1-217ENST00000512946 THSD7BQ9C0I4 1608 aa7.87□□□□□ -1.15
LIMCH1-217ENST00000512946 MIR22HGQ0VDD5 57 aa7.87□□□□□ -1.15
LIMCH1-217ENST00000512946 C22orf24Q9Y442 160 aa7.87□□□□□ -1.15
LIMCH1-217ENST00000512946 COL4A3Q01955 1670 aa7.86□□□□□ -1.15
LIMCH1-217ENST00000512946 LINC01556Q5JQF7 62 aa7.86□□□□□ -1.15
LIMCH1-217ENST00000512946 PRR15Q8IV56 129 aa7.86□□□□□ -1.15
LIMCH1-217ENST00000512946 IGLV1-51P01701 117 aa7.86□□□□□ -1.15
LIMCH1-217ENST00000512946 Q6ZRU5 148 aa7.85□□□□□ -1.15
LIMCH1-217ENST00000512946 Q8NA96 180 aa7.85□□□□□ -1.15
LIMCH1-217ENST00000512946 C5orf42Q9H799 3197 aa7.85□□□□□ -1.15
LIMCH1-217ENST00000512946 FSHBP01225 129 aa7.84□□□□□ -1.15
LIMCH1-217ENST00000512946 FAM218AQ96MZ4 157 aa7.84□□□□□ -1.15
LIMCH1-217ENST00000512946 HCFC1P51610 2035 aa7.84□□□□□ -1.15
LIMCH1-217ENST00000512946 SZT2Q5T011 3432 aa7.83□□□□□ -1.16
LIMCH1-217ENST00000512946 PCDH15Q96QU1 1955 aa7.83□□□□□ -1.16
LIMCH1-217ENST00000512946 CSPG4Q6UVK1 2322 aa7.82□□□□□ -1.16
LIMCH1-217ENST00000512946 A8MWP4 228 aa7.82□□□□□ -1.16
LIMCH1-217ENST00000512946 NUP210Q8TEM1 1887 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-217ENST00000512946 ANAPC1Q9H1A4 1944 aa7.82□□□□□ -1.16
LIMCH1-217ENST00000512946 A8MTW9 85 aa7.82□□□□□ -1.16
LIMCH1-217ENST00000512946 C10orf99Q6UWK7 81 aa7.82□□□□□ -1.16
LIMCH1-217ENST00000512946 LYPD5Q6UWN5 251 aa7.81□□□□□ -1.16
LIMCH1-217ENST00000512946 IGLV5-52A0A0A0MRZ9 124 aa7.81□□□□□ -1.16
LIMCH1-217ENST00000512946 Q6ZRX8 168 aa7.81□□□□□ -1.16
LIMCH1-217ENST00000512946 SPANXA2-OT1Q8N9U9 137 aa7.81□□□□□ -1.16
LIMCH1-217ENST00000512946 CDC42SE1Q9NRR8 79 aa7.81□□□□□ -1.16
LIMCH1-217ENST00000512946 VCANP13611 3396 aa7.81□□□□□ -1.16
LIMCH1-217ENST00000512946 AGRNO00468 2067 aa7.81□□□□□ -1.16
LIMCH1-217ENST00000512946 KIAA1549Q9HCM3 1950 aa7.81□□□□□ -1.16
LIMCH1-217ENST00000512946 DENND4CQ5VZ89 1909 aa7.81□□□□□ -1.16
LIMCH1-217ENST00000512946 MGAMO43451 1857 aa7.8□□□□□ -1.16
LIMCH1-217ENST00000512946 LINC00476Q8WZB0 136 aa7.8□□□□□ -1.16
LIMCH1-217ENST00000512946 WDR87Q6ZQQ6 2873 aa7.8□□□□□ -1.16
LIMCH1-217ENST00000512946 LINC00313P59037 77 aa7.8□□□□□ -1.16
LIMCH1-217ENST00000512946 ZFHX2Q9C0A1 2572 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-217ENST00000512946 EML5Q05BV3 1969 aa7.8□□□□□ -1.16
LIMCH1-217ENST00000512946 H7BZZ5 65 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms