RNA–Protein interactions for RNA: ENST00000509388.5

RNF4-213, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-213ENST00000509388 PKIGQ9Y2B9 76 aa9.62□□□□□ -0.87
RNF4-213ENST00000509388 IGLV5-39A0A0G2JS06 123 aa9.61□□□□□ -0.87
RNF4-213ENST00000509388 C2orf82Q6UX34 121 aa9.61□□□□□ -0.87
RNF4-213ENST00000509388 UNQ6190/PRO20217Q6UXQ8 127 aa9.61□□□□□ -0.87
RNF4-213ENST00000509388 RNF151Q2KHN1 245 aa9.59□□□□□ -0.87
RNF4-213ENST00000509388 TRBV30A0A0K0K1B3 111 aa9.58□□□□□ -0.88
RNF4-213ENST00000509388 SCGB1D1O95968 90 aa9.58□□□□□ -0.88
RNF4-213ENST00000509388 KRTAP10-1P60331 282 aa9.58□□□□□ -0.88
RNF4-213ENST00000509388 C10orf25Q5T742 122 aa9.58□□□□□ -0.88
RNF4-213ENST00000509388 SFTA2Q6UW10 78 aa9.58□□□□□ -0.88
RNF4-213ENST00000509388 PLEKHB2Q96CS7 222 aa9.58□□□□□ -0.88
RNF4-213ENST00000509388 LEPROTO15243 131 aa9.57□□□□□ -0.88
RNF4-213ENST00000509388 DPH3Q96FX2 82 aa9.57□□□□□ -0.88
RNF4-213ENST00000509388 C6orf48Q9UBA6 75 aa9.57□□□□□ -0.88
RNF4-213ENST00000509388 LOC107984640A0A0U1RRK4 108 aa9.56□□□□□ -0.88
RNF4-213ENST00000509388 LGALS3P17931 250 aaKnown RBP9.56□□□□□ -0.88
RNF4-213ENST00000509388 SDIM1Q6ZPB5 146 aa9.56□□□□□ -0.88
RNF4-213ENST00000509388 ATOH7Q8N100 152 aa9.56□□□□□ -0.88
RNF4-213ENST00000509388 STPG4Q8N801 248 aa9.56□□□□□ -0.88
RNF4-213ENST00000509388 EPPK1P58107 5090 aaKnown RBP9.56□□□□□ -0.88
RNF4-213ENST00000509388 RPL18AQ02543 176 aaKnown RBP9.55□□□□□ -0.88
RNF4-213ENST00000509388 HECTD4Q9Y4D8 3996 aa9.55□□□□□ -0.88
RNF4-213ENST00000509388 IGKV2-24A0A0C4DH68 120 aa9.54□□□□□ -0.88
RNF4-213ENST00000509388 E9PLD3 99 aa9.54□□□□□ -0.88
RNF4-213ENST00000509388 J3QQQ9 107 aa9.54□□□□□ -0.88
RNF4-213ENST00000509388 GAGE2BQ13066 116 aa9.54□□□□□ -0.88
RNF4-213ENST00000509388 MYMXA0A1B0GTQ4 84 aa9.53□□□□□ -0.88
RNF4-213ENST00000509388 HSBP1L1C9JCN9 74 aa9.53□□□□□ -0.88
RNF4-213ENST00000509388 C9orf116Q5BN46 136 aaPredicted RBP9.53□□□□□ -0.88
RNF4-213ENST00000509388 ZNF625Q96I27 306 aaPredicted RBP9.53□□□□□ -0.88
RNF4-213ENST00000509388 LINC00474Q9P2X8 69 aa9.53□□□□□ -0.88
RNF4-213ENST00000509388 NDUFA12Q9UI09 145 aa9.53□□□□□ -0.88
RNF4-213ENST00000509388 DYNC1H1Q14204 4646 aaKnown RBP9.53□□□□□ -0.88
RNF4-213ENST00000509388 DNAH5Q8TE73 4624 aa9.52□□□□□ -0.88
RNF4-213ENST00000509388 NDUFC2-KCTD14E9PQ53 114 aa9.51□□□□□ -0.89
RNF4-213ENST00000509388 TLX1NBP0CAT3 122 aa9.51□□□□□ -0.89
RNF4-213ENST00000509388 PFN2P35080 140 aa9.51□□□□□ -0.89
RNF4-213ENST00000509388 NMUP48645 174 aa9.51□□□□□ -0.89
RNF4-213ENST00000509388 HERV-K104P63124 156 aa9.51□□□□□ -0.89
RNF4-213ENST00000509388 MAJINQ3KP22 176 aa9.51□□□□□ -0.89
RNF4-213ENST00000509388 GAGE2EQ4V326 116 aa9.51□□□□□ -0.89
RNF4-213ENST00000509388 GAGE2DQ9UEU5 116 aa9.51□□□□□ -0.89
RNF4-213ENST00000509388 A0A096LNI7 61 aa9.5□□□□□ -0.89
RNF4-213ENST00000509388 LINC00587B1AMM8 73 aa9.5□□□□□ -0.89
RNF4-213ENST00000509388 MEIG1Q5JSS6 88 aa9.5□□□□□ -0.89
RNF4-213ENST00000509388 FAM30AQ9NZY2 134 aa9.5□□□□□ -0.89
RNF4-213ENST00000509388 ERG28Q9UKR5 140 aa9.5□□□□□ -0.89
RNF4-213ENST00000509388 CHTF8P0CG12 524 aa9.49□□□□□ -0.89
RNF4-213ENST00000509388 PTTG1IPP53801 180 aa9.49□□□□□ -0.89
RNF4-213ENST00000509388 TSPEAR-AS2P59090 65 aa9.49□□□□□ -0.89
RNF4-213ENST00000509388 Q6ZRP5 223 aa9.49□□□□□ -0.89
RNF4-213ENST00000509388 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.49□□□□□ -0.89
RNF4-213ENST00000509388 LINC00158P58513 81 aa9.48□□□□□ -0.89
RNF4-213ENST00000509388 COX17Q14061 63 aa9.48□□□□□ -0.89
RNF4-213ENST00000509388 JOSD1Q15040 202 aaPredicted RBP9.47□□□□□ -0.89
RNF4-213ENST00000509388 ANKRD39Q53RE8 183 aa9.47□□□□□ -0.89
RNF4-213ENST00000509388 Q6ZSA8 131 aa9.47□□□□□ -0.89
RNF4-213ENST00000509388 LRP1BQ9NZR2 4599 aa9.47□□□□□ -0.89
RNF4-213ENST00000509388 PKHD1P08F94 4074 aa9.46□□□□□ -0.89
RNF4-213ENST00000509388 IGKV2D-26A0A0A0MRZ7 120 aa9.46□□□□□ -0.9
RNF4-213ENST00000509388 A0A0U1RRA0 63 aa9.46□□□□□ -0.9
RNF4-213ENST00000509388 CIRBPQ14011 172 aaKnown RBP9.46□□□□□ -0.9
RNF4-213ENST00000509388 SPACA4Q8TDM5 124 aa9.46□□□□□ -0.9
RNF4-213ENST00000509388 ZNF815PA8K554 130 aa9.45□□□□□ -0.9
RNF4-213ENST00000509388 PANO1I0J062 215 aa9.45□□□□□ -0.9
RNF4-213ENST00000509388 CDK2AP2O75956 126 aa9.45□□□□□ -0.9
RNF4-213ENST00000509388 SMIM13P0DJ93 91 aa9.44□□□□□ -0.9
RNF4-213ENST00000509388 HAMPP81172 84 aa9.44□□□□□ -0.9
RNF4-213ENST00000509388 SCXQ7RTU7 201 aa9.44□□□□□ -0.9
RNF4-213ENST00000509388 XAGE1AQ9HD64 81 aa9.44□□□□□ -0.9
RNF4-213ENST00000509388 BIRC6Q9NR09 4857 aa9.44□□□□□ -0.9
RNF4-213ENST00000509388 A0A087WYN8 130 aa9.43□□□□□ -0.9
RNF4-213ENST00000509388 CIRBP-AS1Q8TBR5 109 aa9.43□□□□□ -0.9
RNF4-213ENST00000509388 DNAH8Q96JB1 4490 aa9.43□□□□□ -0.9
RNF4-213ENST00000509388 A0A0J9YXY3 114 aa9.42□□□□□ -0.9
RNF4-213ENST00000509388 XGP55808 180 aa9.42□□□□□ -0.9
RNF4-213ENST00000509388 SCGB1D4Q6XE38 83 aa9.42□□□□□ -0.9
RNF4-213ENST00000509388 VAMP8Q9BV40 100 aa9.42□□□□□ -0.9
RNF4-213ENST00000509388 TTTY13Q9BZ97 58 aa9.42□□□□□ -0.9
RNF4-213ENST00000509388 C9orf129Q5T035 196 aaKnown RBP9.41□□□□□ -0.9
RNF4-213ENST00000509388 PYY3Q5JQD4 70 aa9.4□□□□□ -0.9
RNF4-213ENST00000509388 PCP2Q8IVA1 136 aa9.4□□□□□ -0.9
RNF4-213ENST00000509388 MIR7-3HGQ8N6C7 128 aa9.4□□□□□ -0.9
RNF4-213ENST00000509388 SND1-IT1Q9HBX3 110 aa9.4□□□□□ -0.9
RNF4-213ENST00000509388 PLAC8Q9NZF1 115 aa9.4□□□□□ -0.9
RNF4-213ENST00000509388 PAM16Q9Y3D7 125 aa9.4□□□□□ -0.9
RNF4-213ENST00000509388 A0A1W2PNN7 141 aa9.39□□□□□ -0.91
RNF4-213ENST00000509388 FAM19A5Q7Z5A7 132 aaPredicted RBP9.39□□□□□ -0.91
RNF4-213ENST00000509388 FAM168BA1KXE4 195 aa9.38□□□□□ -0.91
RNF4-213ENST00000509388 SPATA45Q537H7 98 aa9.38□□□□□ -0.91
RNF4-213ENST00000509388 MIEN1Q9BRT3 115 aa9.38□□□□□ -0.91
RNF4-213ENST00000509388 SMR3BP02814 79 aaPredicted RBP9.37□□□□□ -0.91
RNF4-213ENST00000509388 RPL24P83731 157 aaKnown RBP9.37□□□□□ -0.91
RNF4-213ENST00000509388 DAND5Q8N907 189 aa9.37□□□□□ -0.91
RNF4-213ENST00000509388 TMEM238C9JI98 176 aa9.36□□□□□ -0.91
RNF4-213ENST00000509388 TIMM17BO60830 172 aa9.36□□□□□ -0.91
RNF4-213ENST00000509388 S100A12P80511 92 aa9.36□□□□□ -0.91
RNF4-213ENST00000509388 C7orf33Q8WU49 177 aa9.36□□□□□ -0.91
RNF4-213ENST00000509388 APOBP04114 4563 aaKnown RBP9.35□□□□□ -0.91
RNF4-213ENST00000509388 NKAPP1Q8N9T2 125 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms