RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 LINC00322Q6ZN03 302 aaPredicted RBP1□□□□□ -2.25
NUP54-208ENST00000508604 NTM-AS1Q6ZSK4 140 aa1□□□□□ -2.25
NUP54-208ENST00000508604 Q86TA4 180 aa1□□□□□ -2.25
NUP54-208ENST00000508604 Q8NDZ9 215 aa1□□□□□ -2.25
NUP54-208ENST00000508604 MUC7Q8TAX7 377 aa1□□□□□ -2.25
NUP54-208ENST00000508604 SMIM2Q9BVW6 85 aa1□□□□□ -2.25
NUP54-208ENST00000508604 C14orf132Q9NPU4 83 aa1□□□□□ -2.25
NUP54-208ENST00000508604 NDUFA4L2Q9NRX3 87 aa1□□□□□ -2.25
NUP54-208ENST00000508604 TENM1Q9UKZ4 2725 aa1□□□□□ -2.25
NUP54-208ENST00000508604 ARFGEF3Q5TH69 2177 aa1□□□□□ -2.25
NUP54-208ENST00000508604 HEATR5BQ9P2D3 2071 aa1□□□□□ -2.25
NUP54-208ENST00000508604 INTS1Q8N201 2190 aaKnown RBP1□□□□□ -2.25
NUP54-208ENST00000508604 MED12Q93074 2177 aa1□□□□□ -2.25
NUP54-208ENST00000508604 MUC4Q99102 2169 aa1□□□□□ -2.25
NUP54-208ENST00000508604 A0A087WSZ3 146 aa1□□□□□ -2.25
NUP54-208ENST00000508604 LOC110117498A0A087WWA1 95 aa1□□□□□ -2.25
NUP54-208ENST00000508604 TRAV10A0A0B4J240 114 aa1□□□□□ -2.25
NUP54-208ENST00000508604 IGHV3-66A0A0C4DH42 116 aa1□□□□□ -2.25
NUP54-208ENST00000508604 IGHV7-4-1A0A0J9YVY3 117 aa1□□□□□ -2.25
NUP54-208ENST00000508604 B4DSR2 109 aa1□□□□□ -2.25
NUP54-208ENST00000508604 H3BSH0 61 aa1□□□□□ -2.25
NUP54-208ENST00000508604 K7ERS5 55 aa1□□□□□ -2.25
NUP54-208ENST00000508604 CGB3P0DN86 165 aa1□□□□□ -2.25
NUP54-208ENST00000508604 CGB7P0DN87 165 aa1□□□□□ -2.25
NUP54-208ENST00000508604 CNBPP62633 177 aaKnown RBP1□□□□□ -2.25
NUP54-208ENST00000508604 C10orf113Q5VZT2 155 aa1□□□□□ -2.25
NUP54-208ENST00000508604 PRR15LQ9BU68 103 aa1□□□□□ -2.25
NUP54-208ENST00000508604 CHCHD7Q9BUK0 85 aa1□□□□□ -2.25
NUP54-208ENST00000508604 FGF23Q9GZV9 251 aaPredicted RBP1□□□□□ -2.25
NUP54-208ENST00000508604 ORMDL1Q9P0S3 153 aa1□□□□□ -2.25
NUP54-208ENST00000508604 LENEPQ9Y5L5 61 aa1□□□□□ -2.25
NUP54-208ENST00000508604 LINC01558Q9Y6Z2 57 aa1□□□□□ -2.25
NUP54-208ENST00000508604 ARHGAP32A7KAX9 2087 aa1□□□□□ -2.25
NUP54-208ENST00000508604 ESPL1Q14674 2120 aa1□□□□□ -2.25
NUP54-208ENST00000508604 CACNA1AO00555 2505 aa1□□□□□ -2.25
NUP54-208ENST00000508604 IGLV1-50A0A075B6I6 118 aa0.99□□□□□ -2.25
NUP54-208ENST00000508604 IGHV3-73A0A0B4J1V6 119 aa0.99□□□□□ -2.25
NUP54-208ENST00000508604 TRAV21A0A0B4J279 112 aa0.99□□□□□ -2.25
NUP54-208ENST00000508604 C17orf98A8MV24 154 aa0.99□□□□□ -2.25
NUP54-208ENST00000508604 H3BPC8 53 aa0.99□□□□□ -2.25
NUP54-208ENST00000508604 PRB4P10163 310 aaPredicted RBP0.99□□□□□ -2.25
NUP54-208ENST00000508604 RPS27P42677 84 aaKnown RBP0.99□□□□□ -2.25
NUP54-208ENST00000508604 Q6ZS52 159 aa0.99□□□□□ -2.25
NUP54-208ENST00000508604 ZNF625Q96I27 306 aaPredicted RBP0.99□□□□□ -2.25
NUP54-208ENST00000508604 LINC00208Q96KT6 92 aa0.99□□□□□ -2.25
NUP54-208ENST00000508604 C8orf17Q9NRJ1 99 aa0.99□□□□□ -2.25
NUP54-208ENST00000508604 PLAC8Q9NZF1 115 aa0.99□□□□□ -2.25
NUP54-208ENST00000508604 MED13Q9UHV7 2174 aa0.99□□□□□ -2.25
NUP54-208ENST00000508604 SHANK1Q9Y566 2161 aa0.99□□□□□ -2.25
NUP54-208ENST00000508604 IGKV1D-42A0A075B6H8 117 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 IGLV10-54A0A075B6I4 117 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 IGHV3OR16-8A0A075B7F1 116 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 IGHV3-49A0A0A0MS15 119 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 IGHV3-15A0A0B4J1V0 119 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 TRBV10-1A0A0K0K1A3 114 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 CLPSP04118 112 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 PI4KAP42356 2102 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 SPAG11BQ08648 103 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 MIR22HGQ0VDD5 57 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 LUZP6Q538Z0 58 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 RNASE13Q5GAN3 156 aaKnown RBP0.98□□□□□ -2.25
NUP54-208ENST00000508604 HCP5Q6MZN7 132 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 SPAG11AQ6PDA7 123 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.98□□□□□ -2.25
NUP54-208ENST00000508604 Q6ZQT0 140 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 ZGRF1Q86YA3 2104 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 HIGD2AQ9BW72 106 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 KLK9Q9UKQ9 250 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 MACF1Q9UPN3 7388 aaKnown RBP0.98□□□□□ -2.25
NUP54-208ENST00000508604 FREM1Q5H8C1 2179 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 SVILO95425 2214 aa0.98□□□□□ -2.25
NUP54-208ENST00000508604 IGKV1OR2-108A0A075B7D4 117 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 IGHV1-18A0A0C4DH31 117 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 A0A1W2PNM2 257 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 CLPSL1A2RUU4 121 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 A8MWP4 228 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 LECT2O14960 151 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 NDUFA1O15239 70 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 CRIP1P50238 77 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 CMC4P56277 68 aaPredicted RBP0.97□□□□□ -2.25
NUP54-208ENST00000508604 HAMPP81172 84 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 NNATQ16517 81 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 PIGYQ3MUY2 71 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 MIR7-3HGQ8N6C7 128 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 Q8NAQ8 132 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 WFDC9Q8NEX5 89 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 FDCSPQ8NFU4 85 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 LINC00308Q8TCZ7 52 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 COX7B2Q8TF08 81 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 FAM215AQ9Y5M1 114 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 CR1P17927 2039 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 ZNF407Q9C0G0 2248 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 IGKV2-24A0A0C4DH68 120 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 H0Y9P7 68 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 NCR3O14931 201 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 IGHV1-46P01743 117 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 IGHV3-53P01767 116 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 IGHV1-8P0DP01 117 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 ERHP84090 104 aaKnown RBP0.97□□□□□ -2.25
NUP54-208ENST00000508604 PRCDQ00LT1 54 aa0.97□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms