RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 HERVK_113P61574 105 aa5.34□□□□□ -1.55
LIMCH1-206ENST00000505705 CNBPP62633 177 aaKnown RBP5.34□□□□□ -1.55
LIMCH1-206ENST00000505705 LINC01620Q4KN68 170 aa5.34□□□□□ -1.55
LIMCH1-206ENST00000505705 Q8IZM0 81 aa5.34□□□□□ -1.55
LIMCH1-206ENST00000505705 DPH3Q96FX2 82 aa5.34□□□□□ -1.55
LIMCH1-206ENST00000505705 HIST1H2BLQ99880 126 aa5.34□□□□□ -1.55
LIMCH1-206ENST00000505705 KRTAP9-2Q9BYQ4 174 aa5.34□□□□□ -1.55
LIMCH1-206ENST00000505705 FAT2Q9NYQ8 4349 aa5.33□□□□□ -1.56
LIMCH1-206ENST00000505705 TMEM223A0PJW6 202 aa5.33□□□□□ -1.56
LIMCH1-206ENST00000505705 FAM229AH3BQW9 127 aa5.33□□□□□ -1.56
LIMCH1-206ENST00000505705 SLPIP03973 132 aa5.33□□□□□ -1.56
LIMCH1-206ENST00000505705 CXCL5P42830 114 aa5.33□□□□□ -1.56
LIMCH1-206ENST00000505705 C2orf82Q6UX34 121 aa5.33□□□□□ -1.56
LIMCH1-206ENST00000505705 UNQ6190/PRO20217Q6UXQ8 127 aa5.33□□□□□ -1.56
LIMCH1-206ENST00000505705 Q6ZRU5 148 aa5.33□□□□□ -1.56
LIMCH1-206ENST00000505705 C9orf163Q8N9P6 203 aa5.33□□□□□ -1.56
LIMCH1-206ENST00000505705 PKIGQ9Y2B9 76 aa5.33□□□□□ -1.56
LIMCH1-206ENST00000505705 KIAA0087Q14695 138 aa5.32□□□□□ -1.56
LIMCH1-206ENST00000505705 LINC01545Q5VT33 79 aa5.32□□□□□ -1.56
LIMCH1-206ENST00000505705 EPPK1P58107 5090 aaKnown RBP5.31□□□□□ -1.56
LIMCH1-206ENST00000505705 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.31□□□□□ -1.56
LIMCH1-206ENST00000505705 AKR1D1P51857 326 aa5.31□□□□□ -1.56
LIMCH1-206ENST00000505705 KRTAP10-1P60331 282 aa5.31□□□□□ -1.56
LIMCH1-206ENST00000505705 RPL18AQ02543 176 aaKnown RBP5.31□□□□□ -1.56
LIMCH1-206ENST00000505705 IGKV2-24A0A0C4DH68 120 aa5.3□□□□□ -1.56
LIMCH1-206ENST00000505705 IGLV5-39A0A0G2JS06 123 aa5.3□□□□□ -1.56
LIMCH1-206ENST00000505705 TRBV30A0A0K0K1B3 111 aa5.3□□□□□ -1.56
LIMCH1-206ENST00000505705 LOC107984640A0A0U1RRK4 108 aa5.3□□□□□ -1.56
LIMCH1-206ENST00000505705 SCGB1D1O95968 90 aa5.3□□□□□ -1.56
LIMCH1-206ENST00000505705 LGALS3P17931 250 aaKnown RBP5.3□□□□□ -1.56
LIMCH1-206ENST00000505705 GAGE2BQ13066 116 aa5.3□□□□□ -1.56
LIMCH1-206ENST00000505705 RNF151Q2KHN1 245 aa5.3□□□□□ -1.56
LIMCH1-206ENST00000505705 C10orf25Q5T742 122 aa5.3□□□□□ -1.56
LIMCH1-206ENST00000505705 PLEKHB2Q96CS7 222 aa5.3□□□□□ -1.56
LIMCH1-206ENST00000505705 C6orf48Q9UBA6 75 aa5.3□□□□□ -1.56
LIMCH1-206ENST00000505705 PKD1P98161 4303 aa5.29□□□□□ -1.56
LIMCH1-206ENST00000505705 KRTAP9-6A0A140TA67 174 aa5.29□□□□□ -1.56
LIMCH1-206ENST00000505705 LEPROTO15243 131 aa5.29□□□□□ -1.56
LIMCH1-206ENST00000505705 MAJINQ3KP22 176 aa5.29□□□□□ -1.56
LIMCH1-206ENST00000505705 C9orf116Q5BN46 136 aaPredicted RBP5.29□□□□□ -1.56
LIMCH1-206ENST00000505705 SFTA2Q6UW10 78 aa5.29□□□□□ -1.56
LIMCH1-206ENST00000505705 SDIM1Q6ZPB5 146 aa5.29□□□□□ -1.56
LIMCH1-206ENST00000505705 ATOH7Q8N100 152 aa5.29□□□□□ -1.56
LIMCH1-206ENST00000505705 STPG4Q8N801 248 aa5.29□□□□□ -1.56
LIMCH1-206ENST00000505705 ZNF625Q96I27 306 aaPredicted RBP5.29□□□□□ -1.56
LIMCH1-206ENST00000505705 DNAH11Q96DT5 4516 aa5.29□□□□□ -1.56
LIMCH1-206ENST00000505705 HECTD4Q9Y4D8 3996 aa5.28□□□□□ -1.56
LIMCH1-206ENST00000505705 MYMXA0A1B0GTQ4 84 aa5.28□□□□□ -1.56
LIMCH1-206ENST00000505705 HSBP1L1C9JCN9 74 aa5.28□□□□□ -1.56
LIMCH1-206ENST00000505705 J3QQQ9 107 aa5.28□□□□□ -1.56
LIMCH1-206ENST00000505705 GAGE2EQ4V326 116 aa5.28□□□□□ -1.56
LIMCH1-206ENST00000505705 LINC00474Q9P2X8 69 aa5.28□□□□□ -1.56
LIMCH1-206ENST00000505705 GAGE2DQ9UEU5 116 aa5.28□□□□□ -1.56
LIMCH1-206ENST00000505705 A0A096LNI7 61 aa5.27□□□□□ -1.57
LIMCH1-206ENST00000505705 E9PLD3 99 aa5.27□□□□□ -1.57
LIMCH1-206ENST00000505705 CHTF8P0CG12 524 aa5.27□□□□□ -1.57
LIMCH1-206ENST00000505705 PFN2P35080 140 aa5.27□□□□□ -1.57
LIMCH1-206ENST00000505705 MEIG1Q5JSS6 88 aa5.27□□□□□ -1.57
LIMCH1-206ENST00000505705 FAM30AQ9NZY2 134 aa5.27□□□□□ -1.57
LIMCH1-206ENST00000505705 NDUFA12Q9UI09 145 aa5.27□□□□□ -1.57
LIMCH1-206ENST00000505705 DNAH5Q8TE73 4624 aa5.27□□□□□ -1.57
LIMCH1-206ENST00000505705 A0A0U1RRA0 63 aa5.26□□□□□ -1.57
LIMCH1-206ENST00000505705 NDUFC2-KCTD14E9PQ53 114 aa5.26□□□□□ -1.57
LIMCH1-206ENST00000505705 NMUP48645 174 aa5.26□□□□□ -1.57
LIMCH1-206ENST00000505705 PTTG1IPP53801 180 aa5.26□□□□□ -1.57
LIMCH1-206ENST00000505705 LINC00158P58513 81 aa5.26□□□□□ -1.57
LIMCH1-206ENST00000505705 HERV-K104P63124 156 aa5.26□□□□□ -1.57
LIMCH1-206ENST00000505705 HAMPP81172 84 aa5.26□□□□□ -1.57
LIMCH1-206ENST00000505705 Q6ZRP5 223 aa5.26□□□□□ -1.57
LIMCH1-206ENST00000505705 ERG28Q9UKR5 140 aa5.26□□□□□ -1.57
LIMCH1-206ENST00000505705 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.26□□□□□ -1.57
LIMCH1-206ENST00000505705 LINC00587B1AMM8 73 aa5.25□□□□□ -1.57
LIMCH1-206ENST00000505705 TLX1NBP0CAT3 122 aa5.25□□□□□ -1.57
LIMCH1-206ENST00000505705 TSPEAR-AS2P59090 65 aa5.25□□□□□ -1.57
LIMCH1-206ENST00000505705 CDK2AP2O75956 126 aa5.24□□□□□ -1.57
LIMCH1-206ENST00000505705 CIRBPQ14011 172 aaKnown RBP5.24□□□□□ -1.57
LIMCH1-206ENST00000505705 COX17Q14061 63 aa5.24□□□□□ -1.57
LIMCH1-206ENST00000505705 SPACA4Q8TDM5 124 aa5.24□□□□□ -1.57
LIMCH1-206ENST00000505705 KRTAP4-12Q9BQ66 201 aa5.24□□□□□ -1.57
LIMCH1-206ENST00000505705 A0A087WYN8 130 aa5.23□□□□□ -1.57
LIMCH1-206ENST00000505705 ZNF815PA8K554 130 aa5.23□□□□□ -1.57
LIMCH1-206ENST00000505705 PANO1I0J062 215 aa5.23□□□□□ -1.57
LIMCH1-206ENST00000505705 SMIM13P0DJ93 91 aa5.23□□□□□ -1.57
LIMCH1-206ENST00000505705 XGP55808 180 aa5.23□□□□□ -1.57
LIMCH1-206ENST00000505705 JOSD1Q15040 202 aaPredicted RBP5.23□□□□□ -1.57
LIMCH1-206ENST00000505705 ANKRD39Q53RE8 183 aa5.23□□□□□ -1.57
LIMCH1-206ENST00000505705 Q6ZSA8 131 aa5.23□□□□□ -1.57
LIMCH1-206ENST00000505705 SCXQ7RTU7 201 aa5.23□□□□□ -1.57
LIMCH1-206ENST00000505705 CIRBP-AS1Q8TBR5 109 aa5.23□□□□□ -1.57
LIMCH1-206ENST00000505705 XAGE1AQ9HD64 81 aa5.23□□□□□ -1.57
LIMCH1-206ENST00000505705 IGKV2D-26A0A0A0MRZ7 120 aa5.22□□□□□ -1.57
LIMCH1-206ENST00000505705 SMR3BP02814 79 aaPredicted RBP5.22□□□□□ -1.57
LIMCH1-206ENST00000505705 SCGB1D4Q6XE38 83 aa5.22□□□□□ -1.57
LIMCH1-206ENST00000505705 FAM19A5Q7Z5A7 132 aaPredicted RBP5.22□□□□□ -1.57
LIMCH1-206ENST00000505705 TTTY13Q9BZ97 58 aa5.22□□□□□ -1.57
LIMCH1-206ENST00000505705 DYNC1H1Q14204 4646 aaKnown RBP5.22□□□□□ -1.57
LIMCH1-206ENST00000505705 BIRC6Q9NR09 4857 aa5.22□□□□□ -1.57
LIMCH1-206ENST00000505705 LRP1BQ9NZR2 4599 aa5.21□□□□□ -1.58
LIMCH1-206ENST00000505705 A0A0J9YXY3 114 aa5.21□□□□□ -1.58
LIMCH1-206ENST00000505705 GHRHP01286 108 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms