RNA–Protein interactions for RNA: ENST00000503346.1

PDLIM7-209, Transcript of PDZ and LIM domain 7, humanhuman

TSL 2

Gene PDLIM7, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-209ENST00000503346 KRTAP10-4P60372 401 aaPredicted RBP11.51□□□□□ -0.57
PDLIM7-209ENST00000503346 GAGE2BQ13066 116 aa11.51□□□□□ -0.57
PDLIM7-209ENST00000503346 C2orf82Q6UX34 121 aa11.51□□□□□ -0.57
PDLIM7-209ENST00000503346 TOMM7Q9P0U1 55 aa11.51□□□□□ -0.57
PDLIM7-209ENST00000503346 SRRM2Q9UQ35 2752 aaKnown RBP11.49□□□□□ -0.57
PDLIM7-209ENST00000503346 LINC00310P59036 64 aa11.49□□□□□ -0.57
PDLIM7-209ENST00000503346 RPL18AQ02543 176 aaKnown RBP11.49□□□□□ -0.57
PDLIM7-209ENST00000503346 C6orf226Q5I0X4 101 aa11.49□□□□□ -0.57
PDLIM7-209ENST00000503346 H3BRM9 83 aa11.48□□□□□ -0.57
PDLIM7-209ENST00000503346 SERF1AO75920 110 aa11.48□□□□□ -0.57
PDLIM7-209ENST00000503346 CKS1BP61024 79 aa11.48□□□□□ -0.57
PDLIM7-209ENST00000503346 IFI27L1Q96BM0 104 aa11.48□□□□□ -0.57
PDLIM7-209ENST00000503346 CXCL5P42830 114 aa11.47□□□□□ -0.57
PDLIM7-209ENST00000503346 RPL37AP61513 92 aaKnown RBP11.47□□□□□ -0.57
PDLIM7-209ENST00000503346 FAM19A2Q8N3H0 131 aa11.47□□□□□ -0.57
PDLIM7-209ENST00000503346 TRAV12-1A0A0B4J245 112 aa11.46□□□□□ -0.57
PDLIM7-209ENST00000503346 SPINK8P0C7L1 97 aa11.46□□□□□ -0.57
PDLIM7-209ENST00000503346 ZNF22P17026 224 aaPredicted RBP11.46□□□□□ -0.57
PDLIM7-209ENST00000503346 Q6ZRP5 223 aa11.46□□□□□ -0.57
PDLIM7-209ENST00000503346 COX7B2Q8TF08 81 aa11.45□□□□□ -0.58
PDLIM7-209ENST00000503346 A0A1W2PNN7 141 aa11.44□□□□□ -0.58
PDLIM7-209ENST00000503346 C11orf86A6NJI1 115 aa11.44□□□□□ -0.58
PDLIM7-209ENST00000503346 NDUFC2-KCTD14E9PQ53 114 aa11.44□□□□□ -0.58
PDLIM7-209ENST00000503346 F8VRH5 84 aa11.44□□□□□ -0.58
PDLIM7-209ENST00000503346 C7orf33Q8WU49 177 aa11.44□□□□□ -0.58
PDLIM7-209ENST00000503346 CHTOPQ9Y3Y2 248 aaKnown RBP11.44□□□□□ -0.58
PDLIM7-209ENST00000503346 IGLV5-39A0A0G2JS06 123 aa11.43□□□□□ -0.58
PDLIM7-209ENST00000503346 NUPR1O60356 82 aa11.43□□□□□ -0.58
PDLIM7-209ENST00000503346 C9orf116Q5BN46 136 aaPredicted RBP11.43□□□□□ -0.58
PDLIM7-209ENST00000503346 LEPROTL1O95214 131 aa11.42□□□□□ -0.58
PDLIM7-209ENST00000503346 HIST1H2BKO60814 126 aa11.41□□□□□ -0.58
PDLIM7-209ENST00000503346 HIST1H2BJP06899 126 aa11.41□□□□□ -0.58
PDLIM7-209ENST00000503346 HIST1H2BOP23527 126 aa11.41□□□□□ -0.58
PDLIM7-209ENST00000503346 HIST1H2BBP33778 126 aa11.41□□□□□ -0.58
PDLIM7-209ENST00000503346 HIST1H2BDP58876 126 aa11.41□□□□□ -0.58
PDLIM7-209ENST00000503346 HIST1H2BCP62807 126 aa11.41□□□□□ -0.58
PDLIM7-209ENST00000503346 HIST2H2BEQ16778 126 aa11.41□□□□□ -0.58
PDLIM7-209ENST00000503346 GAGE2EQ4V326 116 aa11.41□□□□□ -0.58
PDLIM7-209ENST00000503346 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.41□□□□□ -0.58
PDLIM7-209ENST00000503346 HIST1H2BHQ93079 126 aa11.41□□□□□ -0.58
PDLIM7-209ENST00000503346 HIST1H2BNQ99877 126 aa11.41□□□□□ -0.58
PDLIM7-209ENST00000503346 HIST1H2BMQ99879 126 aa11.41□□□□□ -0.58
PDLIM7-209ENST00000503346 GAGE2DQ9UEU5 116 aa11.41□□□□□ -0.58
PDLIM7-209ENST00000503346 MYCBP2O75592 4640 aa11.4□□□□□ -0.58
PDLIM7-209ENST00000503346 TMEM170BQ5T4T1 132 aa11.4□□□□□ -0.58
PDLIM7-209ENST00000503346 HSPB8Q9UJY1 196 aa11.39□□□□□ -0.59
PDLIM7-209ENST00000503346 S100A1P23297 94 aa11.38□□□□□ -0.59
PDLIM7-209ENST00000503346 PKHD1L1Q86WI1 4243 aa11.38□□□□□ -0.59
PDLIM7-209ENST00000503346 ODF1Q14990 250 aa11.37□□□□□ -0.59
PDLIM7-209ENST00000503346 FAM168BA1KXE4 195 aa11.36□□□□□ -0.59
PDLIM7-209ENST00000503346 C9orf129Q5T035 196 aaKnown RBP11.36□□□□□ -0.59
PDLIM7-209ENST00000503346 TMEM223A0PJW6 202 aa11.35□□□□□ -0.59
PDLIM7-209ENST00000503346 FABP4P15090 132 aa11.35□□□□□ -0.59
PDLIM7-209ENST00000503346 HNRNPA3P51991 378 aaKnown RBP11.35□□□□□ -0.59
PDLIM7-209ENST00000503346 PRR3P79522 188 aaKnown RBP11.35□□□□□ -0.59
PDLIM7-209ENST00000503346 KRTAP7-1Q8IUC3 87 aa11.34□□□□□ -0.59
PDLIM7-209ENST00000503346 FLG2Q5D862 2391 aaPredicted RBP11.33□□□□□ -0.6
PDLIM7-209ENST00000503346 H0Y8G0 127 aa11.33□□□□□ -0.6
PDLIM7-209ENST00000503346 ATP6V1G1O75348 118 aa11.33□□□□□ -0.6
PDLIM7-209ENST00000503346 PHF5AQ7RTV0 110 aaKnown RBP11.33□□□□□ -0.6
PDLIM7-209ENST00000503346 FAM19A5Q7Z5A7 132 aaPredicted RBP11.33□□□□□ -0.6
PDLIM7-209ENST00000503346 SFTA2Q6UW10 78 aa11.32□□□□□ -0.6
PDLIM7-209ENST00000503346 COA6Q5JTJ3 125 aaKnown RBP11.31□□□□□ -0.6
PDLIM7-209ENST00000503346 XAGE1AQ9HD64 81 aa11.31□□□□□ -0.6
PDLIM7-209ENST00000503346 FAT3Q8TDW7 4589 aa11.31□□□□□ -0.6
PDLIM7-209ENST00000503346 MAP1LC3CQ9BXW4 147 aa11.3□□□□□ -0.6
PDLIM7-209ENST00000503346 PLNP26678 52 aa11.29□□□□□ -0.6
PDLIM7-209ENST00000503346 ZNF625Q96I27 306 aaPredicted RBP11.29□□□□□ -0.6
PDLIM7-209ENST00000503346 KRTAP29-1A8MX34 341 aaPredicted RBP11.28□□□□□ -0.6
PDLIM7-209ENST00000503346 M0QXV9 152 aa11.28□□□□□ -0.6
PDLIM7-209ENST00000503346 SERTAD4-AS1Q5TG53 156 aa11.28□□□□□ -0.6
PDLIM7-209ENST00000503346 LRP1Q07954 4544 aaKnown RBP11.28□□□□□ -0.6
PDLIM7-209ENST00000503346 DPM2O94777 84 aa11.27□□□□□ -0.61
PDLIM7-209ENST00000503346 COX17Q14061 63 aa11.27□□□□□ -0.61
PDLIM7-209ENST00000503346 PSORS1C2Q9UIG4 136 aa11.27□□□□□ -0.61
PDLIM7-209ENST00000503346 ERG28Q9UKR5 140 aa11.27□□□□□ -0.61
PDLIM7-209ENST00000503346 PMCHL2Q9BQD1 86 aa11.26□□□□□ -0.61
PDLIM7-209ENST00000503346 PLA2G2DQ9UNK4 145 aa11.26□□□□□ -0.61
PDLIM7-209ENST00000503346 IGKCP01834 107 aa11.25□□□□□ -0.61
PDLIM7-209ENST00000503346 PFN2P35080 140 aa11.25□□□□□ -0.61
PDLIM7-209ENST00000503346 C22orf24Q9Y442 160 aa11.25□□□□□ -0.61
PDLIM7-209ENST00000503346 SYS1-DBNDD2H3BUS1 97 aa11.24□□□□□ -0.61
PDLIM7-209ENST00000503346 OXTP01178 125 aa11.24□□□□□ -0.61
PDLIM7-209ENST00000503346 KRTAP11-1Q8IUC1 163 aa11.24□□□□□ -0.61
PDLIM7-209ENST00000503346 TP73-AS1Q9UF72 201 aa11.23□□□□□ -0.61
PDLIM7-209ENST00000503346 UBE2BP63146 152 aa11.22□□□□□ -0.61
PDLIM7-209ENST00000503346 SRSF9Q13242 221 aaKnown RBP eCLIP11.22□□□□□ -0.61
PDLIM7-209ENST00000503346 LBHQ53QV2 105 aaPredicted RBP11.22□□□□□ -0.61
PDLIM7-209ENST00000503346 C1orf137Q5JT78 98 aa11.22□□□□□ -0.61
PDLIM7-209ENST00000503346 SPINK6Q6UWN8 80 aa11.22□□□□□ -0.61
PDLIM7-209ENST00000503346 HERC1Q15751 4861 aa11.22□□□□□ -0.61
PDLIM7-209ENST00000503346 LEPROTO15243 131 aa11.21□□□□□ -0.61
PDLIM7-209ENST00000503346 HERVK_113P61574 105 aa11.21□□□□□ -0.61
PDLIM7-209ENST00000503346 HERV-K104P63124 156 aa11.21□□□□□ -0.61
PDLIM7-209ENST00000503346 SND1-IT1Q9HBX3 110 aa11.21□□□□□ -0.61
PDLIM7-209ENST00000503346 IGLV5-37A0A075B6J1 123 aa11.2□□□□□ -0.62
PDLIM7-209ENST00000503346 J3QL48 77 aa11.2□□□□□ -0.62
PDLIM7-209ENST00000503346 PET117Q6UWS5 81 aa11.2□□□□□ -0.62
PDLIM7-209ENST00000503346 PLEKHB2Q96CS7 222 aa11.2□□□□□ -0.62
PDLIM7-209ENST00000503346 NDUFA12Q9UI09 145 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 109.3 ms