RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 COX7B2Q8TF08 81 aa7.71□□□□□ -1.18
CUX1-210ENST00000497815 C2orf48Q96LS8 159 aa7.71□□□□□ -1.18
CUX1-210ENST00000497815 CARD19Q96LW7 228 aa7.71□□□□□ -1.18
CUX1-210ENST00000497815 DNAH11Q96DT5 4516 aa7.71□□□□□ -1.18
CUX1-210ENST00000497815 KRTAP10-1P60331 282 aa7.7□□□□□ -1.18
CUX1-210ENST00000497815 CKS1BP61024 79 aa7.7□□□□□ -1.18
CUX1-210ENST00000497815 LINC01545Q5VT33 79 aa7.7□□□□□ -1.18
CUX1-210ENST00000497815 Q8IZM0 81 aa7.7□□□□□ -1.18
CUX1-210ENST00000497815 C9orf163Q8N9P6 203 aa7.7□□□□□ -1.18
CUX1-210ENST00000497815 TMEM223A0PJW6 202 aa7.69□□□□□ -1.18
CUX1-210ENST00000497815 NDUFA1O15239 70 aa7.69□□□□□ -1.18
CUX1-210ENST00000497815 C10orf25Q5T742 122 aa7.69□□□□□ -1.18
CUX1-210ENST00000497815 UNQ6190/PRO20217Q6UXQ8 127 aa7.69□□□□□ -1.18
CUX1-210ENST00000497815 HECTD4Q9Y4D8 3996 aa7.69□□□□□ -1.18
CUX1-210ENST00000497815 IGLV5-39A0A0G2JS06 123 aa7.68□□□□□ -1.18
CUX1-210ENST00000497815 C20orf202A1L168 122 aa7.68□□□□□ -1.18
CUX1-210ENST00000497815 C6orf48Q9UBA6 75 aa7.67□□□□□ -1.18
CUX1-210ENST00000497815 F8WDY8 70 aa7.66□□□□□ -1.18
CUX1-210ENST00000497815 ATOH7Q8N100 152 aa7.66□□□□□ -1.18
CUX1-210ENST00000497815 CXCL5P42830 114 aa7.65□□□□□ -1.18
CUX1-210ENST00000497815 HERVK_113P61574 105 aa7.65□□□□□ -1.18
CUX1-210ENST00000497815 C9orf116Q5BN46 136 aaPredicted RBP7.65□□□□□ -1.18
CUX1-210ENST00000497815 SDIM1Q6ZPB5 146 aa7.65□□□□□ -1.18
CUX1-210ENST00000497815 IGKV2-24A0A0C4DH68 120 aa7.64□□□□□ -1.19
CUX1-210ENST00000497815 TRBV30A0A0K0K1B3 111 aa7.64□□□□□ -1.19
CUX1-210ENST00000497815 HAMPP81172 84 aa7.64□□□□□ -1.19
CUX1-210ENST00000497815 RPL18AQ02543 176 aaKnown RBP7.64□□□□□ -1.19
CUX1-210ENST00000497815 STPG4Q8N801 248 aa7.64□□□□□ -1.19
CUX1-210ENST00000497815 FAM30AQ9NZY2 134 aa7.64□□□□□ -1.19
CUX1-210ENST00000497815 BIRC6Q9NR09 4857 aa7.63□□□□□ -1.19
CUX1-210ENST00000497815 LOC107984640A0A0U1RRK4 108 aa7.63□□□□□ -1.19
CUX1-210ENST00000497815 LEPROTO15243 131 aa7.63□□□□□ -1.19
CUX1-210ENST00000497815 CHTF8P0CG12 524 aa7.63□□□□□ -1.19
CUX1-210ENST00000497815 GAGE2BQ13066 116 aa7.63□□□□□ -1.19
CUX1-210ENST00000497815 RNF151Q2KHN1 245 aa7.63□□□□□ -1.19
CUX1-210ENST00000497815 ZNF625Q96I27 306 aaPredicted RBP7.63□□□□□ -1.19
CUX1-210ENST00000497815 DNAH5Q8TE73 4624 aa7.62□□□□□ -1.19
CUX1-210ENST00000497815 A0A096LNI7 61 aa7.62□□□□□ -1.19
CUX1-210ENST00000497815 PANO1I0J062 215 aa7.62□□□□□ -1.19
CUX1-210ENST00000497815 SCGB1D1O95968 90 aa7.62□□□□□ -1.19
CUX1-210ENST00000497815 TSPEAR-AS2P59090 65 aa7.62□□□□□ -1.19
CUX1-210ENST00000497815 PLEKHB2Q96CS7 222 aa7.62□□□□□ -1.19
CUX1-210ENST00000497815 DPH3Q96FX2 82 aa7.62□□□□□ -1.19
CUX1-210ENST00000497815 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.62□□□□□ -1.19
CUX1-210ENST00000497815 DYNC1H1Q14204 4646 aaKnown RBP7.61□□□□□ -1.19
CUX1-210ENST00000497815 J3QQQ9 107 aa7.61□□□□□ -1.19
CUX1-210ENST00000497815 GAGE2EQ4V326 116 aa7.61□□□□□ -1.19
CUX1-210ENST00000497815 GAGE2DQ9UEU5 116 aa7.61□□□□□ -1.19
CUX1-210ENST00000497815 PKIGQ9Y2B9 76 aa7.61□□□□□ -1.19
CUX1-210ENST00000497815 PKHD1P08F94 4074 aa7.61□□□□□ -1.19
CUX1-210ENST00000497815 E9PLD3 99 aa7.6□□□□□ -1.19
CUX1-210ENST00000497815 LGALS3P17931 250 aaKnown RBP7.6□□□□□ -1.19
CUX1-210ENST00000497815 PFN2P35080 140 aa7.6□□□□□ -1.19
CUX1-210ENST00000497815 MAJINQ3KP22 176 aa7.6□□□□□ -1.19
CUX1-210ENST00000497815 Q6ZRP5 223 aa7.6□□□□□ -1.19
CUX1-210ENST00000497815 NDUFA12Q9UI09 145 aa7.6□□□□□ -1.19
CUX1-210ENST00000497815 NDUFC2-KCTD14E9PQ53 114 aa7.59□□□□□ -1.19
CUX1-210ENST00000497815 AKR1D1P51857 326 aa7.59□□□□□ -1.19
CUX1-210ENST00000497815 PTTG1IPP53801 180 aa7.59□□□□□ -1.19
CUX1-210ENST00000497815 SFTA2Q6UW10 78 aa7.59□□□□□ -1.19
CUX1-210ENST00000497815 Q6ZSA8 131 aa7.59□□□□□ -1.19
CUX1-210ENST00000497815 IGKV2D-26A0A0A0MRZ7 120 aa7.58□□□□□ -1.2
CUX1-210ENST00000497815 MYMXA0A1B0GTQ4 84 aa7.58□□□□□ -1.2
CUX1-210ENST00000497815 TLX1NBP0CAT3 122 aa7.58□□□□□ -1.2
CUX1-210ENST00000497815 ANKRD39Q53RE8 183 aa7.58□□□□□ -1.2
CUX1-210ENST00000497815 SCXQ7RTU7 201 aa7.58□□□□□ -1.2
CUX1-210ENST00000497815 SPACA4Q8TDM5 124 aa7.58□□□□□ -1.2
CUX1-210ENST00000497815 ERG28Q9UKR5 140 aa7.58□□□□□ -1.2
CUX1-210ENST00000497815 A0A0U1RRA0 63 aa7.57□□□□□ -1.2
CUX1-210ENST00000497815 NMUP48645 174 aa7.57□□□□□ -1.2
CUX1-210ENST00000497815 XGP55808 180 aa7.57□□□□□ -1.2
CUX1-210ENST00000497815 MEIG1Q5JSS6 88 aa7.57□□□□□ -1.2
CUX1-210ENST00000497815 CIRBP-AS1Q8TBR5 109 aa7.57□□□□□ -1.2
CUX1-210ENST00000497815 XAGE1AQ9HD64 81 aa7.57□□□□□ -1.2
CUX1-210ENST00000497815 LINC00474Q9P2X8 69 aa7.57□□□□□ -1.2
CUX1-210ENST00000497815 HSBP1L1C9JCN9 74 aa7.56□□□□□ -1.2
CUX1-210ENST00000497815 CDK2AP2O75956 126 aa7.56□□□□□ -1.2
CUX1-210ENST00000497815 LINC00158P58513 81 aa7.56□□□□□ -1.2
CUX1-210ENST00000497815 HERV-K104P63124 156 aa7.56□□□□□ -1.2
CUX1-210ENST00000497815 CIRBPQ14011 172 aaKnown RBP7.56□□□□□ -1.2
CUX1-210ENST00000497815 TTTY13Q9BZ97 58 aa7.56□□□□□ -1.2
CUX1-210ENST00000497815 LRP1BQ9NZR2 4599 aa7.56□□□□□ -1.2
CUX1-210ENST00000497815 A0A087WYN8 130 aa7.55□□□□□ -1.2
CUX1-210ENST00000497815 SMIM13P0DJ93 91 aa7.55□□□□□ -1.2
CUX1-210ENST00000497815 JOSD1Q15040 202 aaPredicted RBP7.55□□□□□ -1.2
CUX1-210ENST00000497815 FAM168BA1KXE4 195 aa7.54□□□□□ -1.2
CUX1-210ENST00000497815 ZNF815PA8K554 130 aa7.54□□□□□ -1.2
CUX1-210ENST00000497815 C9orf129Q5T035 196 aaKnown RBP7.54□□□□□ -1.2
CUX1-210ENST00000497815 A0A1W2PNN7 141 aa7.53□□□□□ -1.2
CUX1-210ENST00000497815 SMR3BP02814 79 aaPredicted RBP7.53□□□□□ -1.2
CUX1-210ENST00000497815 COX17Q14061 63 aa7.53□□□□□ -1.2
CUX1-210ENST00000497815 FAM19A5Q7Z5A7 132 aaPredicted RBP7.53□□□□□ -1.2
CUX1-210ENST00000497815 A0A0J9YXY3 114 aa7.52□□□□□ -1.21
CUX1-210ENST00000497815 PCP2Q8IVA1 136 aa7.52□□□□□ -1.21
CUX1-210ENST00000497815 SND1-IT1Q9HBX3 110 aa7.52□□□□□ -1.21
CUX1-210ENST00000497815 PLAC8Q9NZF1 115 aa7.52□□□□□ -1.21
CUX1-210ENST00000497815 LINC00587B1AMM8 73 aa7.51□□□□□ -1.21
CUX1-210ENST00000497815 PYY3Q5JQD4 70 aa7.51□□□□□ -1.21
CUX1-210ENST00000497815 MIR7-3HGQ8N6C7 128 aa7.51□□□□□ -1.21
CUX1-210ENST00000497815 DAND5Q8N907 189 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms