RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-222ENST00000496567 DNAH11Q96DT5 4516 aa14.15□□□□□ -0.14
C9orf3-222ENST00000496567 SLPIP03973 132 aa14.15□□□□□ -0.14
C9orf3-222ENST00000496567 SYCNQ0VAF6 134 aa14.15□□□□□ -0.14
C9orf3-222ENST00000496567 STPG4Q8N801 248 aa14.15□□□□□ -0.14
C9orf3-222ENST00000496567 NDUFA1O15239 70 aa14.14□□□□□ -0.15
C9orf3-222ENST00000496567 CKS1BP61024 79 aa14.14□□□□□ -0.15
C9orf3-222ENST00000496567 CXCL5P42830 114 aa14.13□□□□□ -0.15
C9orf3-222ENST00000496567 SPATA45Q537H7 98 aa14.13□□□□□ -0.15
C9orf3-222ENST00000496567 CARD19Q96LW7 228 aa14.13□□□□□ -0.15
C9orf3-222ENST00000496567 HSBP1L1C9JCN9 74 aa14.13□□□□□ -0.15
C9orf3-222ENST00000496567 FUSP35637 526 aaKnown RBP eCLIP14.13□□□□□ -0.15
C9orf3-222ENST00000496567 HECTD4Q9Y4D8 3996 aa14.12□□□□□ -0.15
C9orf3-222ENST00000496567 ANKRD39Q53RE8 183 aa14.12□□□□□ -0.15
C9orf3-222ENST00000496567 C9orf163Q8N9P6 203 aa14.12□□□□□ -0.15
C9orf3-222ENST00000496567 Q6ZRU5 148 aa14.11□□□□□ -0.15
C9orf3-222ENST00000496567 C2orf82Q6UX34 121 aa14.1□□□□□ -0.15
C9orf3-222ENST00000496567 UNQ6190/PRO20217Q6UXQ8 127 aa14.09□□□□□ -0.15
C9orf3-222ENST00000496567 PLEKHB2Q96CS7 222 aa14.09□□□□□ -0.15
C9orf3-222ENST00000496567 LEPROTO15243 131 aa14.09□□□□□ -0.15
C9orf3-222ENST00000496567 GCSHP23434 173 aa14.09□□□□□ -0.15
C9orf3-222ENST00000496567 RNF151Q2KHN1 245 aa14.09□□□□□ -0.15
C9orf3-222ENST00000496567 SFTA2Q6UW10 78 aa14.09□□□□□ -0.15
C9orf3-222ENST00000496567 TRBV30A0A0K0K1B3 111 aa14.08□□□□□ -0.16
C9orf3-222ENST00000496567 E9PLD3 99 aa14.08□□□□□ -0.16
C9orf3-222ENST00000496567 PRO1933Q9H354 126 aa14.08□□□□□ -0.16
C9orf3-222ENST00000496567 C16orf90A8MZG2 172 aa14.07□□□□□ -0.16
C9orf3-222ENST00000496567 C10orf25Q5T742 122 aa14.07□□□□□ -0.16
C9orf3-222ENST00000496567 PKIGQ9Y2B9 76 aa14.06□□□□□ -0.16
C9orf3-222ENST00000496567 C6orf48Q9UBA6 75 aa14.05□□□□□ -0.16
C9orf3-222ENST00000496567 IGKV2D-26A0A0A0MRZ7 120 aa14.05□□□□□ -0.16
C9orf3-222ENST00000496567 J3QQQ9 107 aa14.05□□□□□ -0.16
C9orf3-222ENST00000496567 LINC01620Q4KN68 170 aa14.05□□□□□ -0.16
C9orf3-222ENST00000496567 LGALS3P17931 250 aaKnown RBP14.03□□□□□ -0.16
C9orf3-222ENST00000496567 C14orf144Q96I85 54 aa14.03□□□□□ -0.16
C9orf3-222ENST00000496567 NMUP48645 174 aa14.02□□□□□ -0.16
C9orf3-222ENST00000496567 ZNF625Q96I27 306 aaPredicted RBP14.02□□□□□ -0.16
C9orf3-222ENST00000496567 NDUFA12Q9UI09 145 aa14.02□□□□□ -0.16
C9orf3-222ENST00000496567 DNAH5Q8TE73 4624 aa14.01□□□□□ -0.17
C9orf3-222ENST00000496567 TSPEAR-AS2P59090 65 aa14.01□□□□□ -0.17
C9orf3-222ENST00000496567 SDIM1Q6ZPB5 146 aa14.01□□□□□ -0.17
C9orf3-222ENST00000496567 LOC107984640A0A0U1RRK4 108 aa14□□□□□ -0.17
C9orf3-222ENST00000496567 MYMXA0A1B0GTQ4 84 aa14□□□□□ -0.17
C9orf3-222ENST00000496567 TSTD3H0UI37 97 aa13.99□□□□□ -0.17
C9orf3-222ENST00000496567 KRTAP10-1P60331 282 aa13.99□□□□□ -0.17
C9orf3-222ENST00000496567 HERV-K104P63124 156 aa13.99□□□□□ -0.17
C9orf3-222ENST00000496567 C9orf116Q5BN46 136 aaPredicted RBP13.99□□□□□ -0.17
C9orf3-222ENST00000496567 PCP2Q8IVA1 136 aa13.99□□□□□ -0.17
C9orf3-222ENST00000496567 TTTY13Q9BZ97 58 aa13.99□□□□□ -0.17
C9orf3-222ENST00000496567 TP73-AS1Q9UF72 201 aa13.99□□□□□ -0.17
C9orf3-222ENST00000496567 PKHD1P08F94 4074 aa13.99□□□□□ -0.17
C9orf3-222ENST00000496567 TLX1NBP0CAT3 122 aa13.98□□□□□ -0.17
C9orf3-222ENST00000496567 COX8AP10176 69 aa13.97□□□□□ -0.17
C9orf3-222ENST00000496567 NDUFC2-KCTD14E9PQ53 114 aa13.96□□□□□ -0.17
C9orf3-222ENST00000496567 RPL18AQ02543 176 aaKnown RBP13.96□□□□□ -0.18
C9orf3-222ENST00000496567 ERG28Q9UKR5 140 aa13.95□□□□□ -0.18
C9orf3-222ENST00000496567 PCP4L1A6NKN8 68 aa13.94□□□□□ -0.18
C9orf3-222ENST00000496567 LINC00587B1AMM8 73 aa13.94□□□□□ -0.18
C9orf3-222ENST00000496567 COX17Q14061 63 aa13.94□□□□□ -0.18
C9orf3-222ENST00000496567 SLC25A34Q6PIV7 304 aa13.94□□□□□ -0.18
C9orf3-222ENST00000496567 MIEN1Q9BRT3 115 aa13.94□□□□□ -0.18
C9orf3-222ENST00000496567 UQCR10Q9UDW1 63 aa13.94□□□□□ -0.18
C9orf3-222ENST00000496567 GAGE2BQ13066 116 aa13.93□□□□□ -0.18
C9orf3-222ENST00000496567 BOD1L2Q8IYS8 172 aa13.93□□□□□ -0.18
C9orf3-222ENST00000496567 LINC00474Q9P2X8 69 aa13.93□□□□□ -0.18
C9orf3-222ENST00000496567 EPPK1P58107 5090 aaKnown RBP13.93□□□□□ -0.18
C9orf3-222ENST00000496567 A0A096LNI7 61 aa13.92□□□□□ -0.18
C9orf3-222ENST00000496567 PFN2P35080 140 aa13.92□□□□□ -0.18
C9orf3-222ENST00000496567 Q6ZRP5 223 aa13.92□□□□□ -0.18
C9orf3-222ENST00000496567 IGKV2-24A0A0C4DH68 120 aa13.92□□□□□ -0.18
C9orf3-222ENST00000496567 ZNF815PA8K554 130 aa13.92□□□□□ -0.18
C9orf3-222ENST00000496567 PTTG1IPP53801 180 aa13.92□□□□□ -0.18
C9orf3-222ENST00000496567 MEIG1Q5JSS6 88 aa13.92□□□□□ -0.18
C9orf3-222ENST00000496567 Q6ZSA8 131 aa13.91□□□□□ -0.18
C9orf3-222ENST00000496567 GAGE2EQ4V326 116 aa13.9□□□□□ -0.18
C9orf3-222ENST00000496567 GAGE2DQ9UEU5 116 aa13.9□□□□□ -0.18
C9orf3-222ENST00000496567 DLEU1O43261 78 aa13.89□□□□□ -0.19
C9orf3-222ENST00000496567 LINC00158P58513 81 aa13.89□□□□□ -0.19
C9orf3-222ENST00000496567 DYNC1H1Q14204 4646 aaKnown RBP13.89□□□□□ -0.19
C9orf3-222ENST00000496567 CHTF8P0CG12 524 aa13.88□□□□□ -0.19
C9orf3-222ENST00000496567 CIRBPQ14011 172 aaKnown RBP13.88□□□□□ -0.19
C9orf3-222ENST00000496567 DPH3Q96FX2 82 aa13.88□□□□□ -0.19
C9orf3-222ENST00000496567 FAM30AQ9NZY2 134 aa13.88□□□□□ -0.19
C9orf3-222ENST00000496567 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.88□□□□□ -0.19
C9orf3-222ENST00000496567 A0A0J9YXY3 114 aa13.88□□□□□ -0.19
C9orf3-222ENST00000496567 DDTP30046 118 aa13.88□□□□□ -0.19
C9orf3-222ENST00000496567 SPACA4Q8TDM5 124 aa13.88□□□□□ -0.19
C9orf3-222ENST00000496567 LRP1BQ9NZR2 4599 aa13.87□□□□□ -0.19
C9orf3-222ENST00000496567 SMIM13P0DJ93 91 aa13.87□□□□□ -0.19
C9orf3-222ENST00000496567 PANO1I0J062 215 aa13.86□□□□□ -0.19
C9orf3-222ENST00000496567 A0A0U1RRA0 63 aa13.85□□□□□ -0.19
C9orf3-222ENST00000496567 HNRNPA3P51991 378 aaKnown RBP13.85□□□□□ -0.19
C9orf3-222ENST00000496567 C2orf91Q6ZV80 131 aa13.84□□□□□ -0.19
C9orf3-222ENST00000496567 SCGB1D4Q6XE38 83 aa13.83□□□□□ -0.19
C9orf3-222ENST00000496567 XAGE1AQ9HD64 81 aa13.83□□□□□ -0.2
C9orf3-222ENST00000496567 DNAH8Q96JB1 4490 aa13.82□□□□□ -0.2
C9orf3-222ENST00000496567 TIMM17BO60830 172 aa13.82□□□□□ -0.2
C9orf3-222ENST00000496567 C9orf129Q5T035 196 aaKnown RBP13.81□□□□□ -0.2
C9orf3-222ENST00000496567 MIR7-3HGQ8N6C7 128 aa13.81□□□□□ -0.2
C9orf3-222ENST00000496567 SND1-IT1Q9HBX3 110 aa13.81□□□□□ -0.2
C9orf3-222ENST00000496567 A0A087WYN8 130 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 128.1 ms