RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 TRAV12-1A0A0B4J245 112 aa10.45□□□□□ -0.74
SF3A1-209ENST00000496189 IGLC3P0DOY3 106 aa10.45□□□□□ -0.74
SF3A1-209ENST00000496189 Q6ZRU5 148 aa10.45□□□□□ -0.74
SF3A1-209ENST00000496189 CHTOPQ9Y3Y2 248 aaKnown RBP10.45□□□□□ -0.74
SF3A1-209ENST00000496189 A0A087WYN8 130 aa10.44□□□□□ -0.74
SF3A1-209ENST00000496189 C6orf226Q5I0X4 101 aa10.44□□□□□ -0.74
SF3A1-209ENST00000496189 TOMM7Q9P0U1 55 aa10.44□□□□□ -0.74
SF3A1-209ENST00000496189 A0A096LNI7 61 aa10.43□□□□□ -0.74
SF3A1-209ENST00000496189 PANO1I0J062 215 aa10.43□□□□□ -0.74
SF3A1-209ENST00000496189 NUPR1O60356 82 aa10.43□□□□□ -0.74
SF3A1-209ENST00000496189 CKS1BP61024 79 aa10.43□□□□□ -0.74
SF3A1-209ENST00000496189 RPL37AP61513 92 aaKnown RBP10.43□□□□□ -0.74
SF3A1-209ENST00000496189 RNF151Q2KHN1 245 aa10.43□□□□□ -0.74
SF3A1-209ENST00000496189 STPG4Q8N801 248 aa10.43□□□□□ -0.74
SF3A1-209ENST00000496189 C7orf33Q8WU49 177 aa10.43□□□□□ -0.74
SF3A1-209ENST00000496189 FABP4P15090 132 aa10.42□□□□□ -0.74
SF3A1-209ENST00000496189 RPL18AQ02543 176 aaKnown RBP10.42□□□□□ -0.74
SF3A1-209ENST00000496189 Q8IZM0 81 aa10.42□□□□□ -0.74
SF3A1-209ENST00000496189 MRPL35Q9NZE8 188 aaKnown RBP10.42□□□□□ -0.74
SF3A1-209ENST00000496189 GAGE2BQ13066 116 aa10.41□□□□□ -0.74
SF3A1-209ENST00000496189 KIAA0087Q14695 138 aa10.41□□□□□ -0.74
SF3A1-209ENST00000496189 PLAC8Q9NZF1 115 aa10.41□□□□□ -0.74
SF3A1-209ENST00000496189 VPS13BQ7Z7G8 4022 aa10.41□□□□□ -0.74
SF3A1-209ENST00000496189 SMIM1B2RUZ4 78 aa10.4□□□□□ -0.74
SF3A1-209ENST00000496189 F8VRH5 84 aa10.4□□□□□ -0.74
SF3A1-209ENST00000496189 H0Y8G0 127 aa10.4□□□□□ -0.74
SF3A1-209ENST00000496189 PTTG1IPP53801 180 aa10.4□□□□□ -0.74
SF3A1-209ENST00000496189 COA6Q5JTJ3 125 aaKnown RBP10.4□□□□□ -0.74
SF3A1-209ENST00000496189 TMEM170BQ5T4T1 132 aa10.4□□□□□ -0.74
SF3A1-209ENST00000496189 MAP1LC3CQ9BXW4 147 aa10.4□□□□□ -0.74
SF3A1-209ENST00000496189 TRBV30A0A0K0K1B3 111 aa10.39□□□□□ -0.75
SF3A1-209ENST00000496189 SPINK8P0C7L1 97 aa10.39□□□□□ -0.75
SF3A1-209ENST00000496189 ZNF22P17026 224 aaPredicted RBP10.39□□□□□ -0.75
SF3A1-209ENST00000496189 CXCL5P42830 114 aa10.39□□□□□ -0.75
SF3A1-209ENST00000496189 FAT1Q14517 4588 aa10.38□□□□□ -0.75
SF3A1-209ENST00000496189 C11orf86A6NJI1 115 aa10.38□□□□□ -0.75
SF3A1-209ENST00000496189 UNQ6190/PRO20217Q6UXQ8 127 aa10.38□□□□□ -0.75
SF3A1-209ENST00000496189 COX7B2Q8TF08 81 aa10.38□□□□□ -0.75
SF3A1-209ENST00000496189 C2orf82Q6UX34 121 aa10.37□□□□□ -0.75
SF3A1-209ENST00000496189 SRRM2Q9UQ35 2752 aaKnown RBP10.37□□□□□ -0.75
SF3A1-209ENST00000496189 ODF1Q14990 250 aa10.36□□□□□ -0.75
SF3A1-209ENST00000496189 C10orf25Q5T742 122 aa10.36□□□□□ -0.75
SF3A1-209ENST00000496189 C6orf48Q9UBA6 75 aa10.36□□□□□ -0.75
SF3A1-209ENST00000496189 PLNP26678 52 aa10.35□□□□□ -0.75
SF3A1-209ENST00000496189 IGLV5-39A0A0G2JS06 123 aa10.34□□□□□ -0.75
SF3A1-209ENST00000496189 TLX1NBP0CAT3 122 aa10.34□□□□□ -0.75
SF3A1-209ENST00000496189 DPM2O94777 84 aa10.33□□□□□ -0.76
SF3A1-209ENST00000496189 SFTA2Q6UW10 78 aa10.33□□□□□ -0.76
SF3A1-209ENST00000496189 S100A6P06703 90 aa10.32□□□□□ -0.76
SF3A1-209ENST00000496189 TMEM223A0PJW6 202 aa10.31□□□□□ -0.76
SF3A1-209ENST00000496189 NDUFC2-KCTD14E9PQ53 114 aa10.31□□□□□ -0.76
SF3A1-209ENST00000496189 SYS1-DBNDD2H3BUS1 97 aa10.31□□□□□ -0.76
SF3A1-209ENST00000496189 GAGE2EQ4V326 116 aa10.31□□□□□ -0.76
SF3A1-209ENST00000496189 GAGE2DQ9UEU5 116 aa10.31□□□□□ -0.76
SF3A1-209ENST00000496189 IGKCP01834 107 aa10.3□□□□□ -0.76
SF3A1-209ENST00000496189 PET117Q6UWS5 81 aa10.3□□□□□ -0.76
SF3A1-209ENST00000496189 HERVK_113P61574 105 aa10.29□□□□□ -0.76
SF3A1-209ENST00000496189 C9orf116Q5BN46 136 aaPredicted RBP10.29□□□□□ -0.76
SF3A1-209ENST00000496189 Q6ZRP5 223 aa10.29□□□□□ -0.76
SF3A1-209ENST00000496189 J3QL48 77 aa10.28□□□□□ -0.76
SF3A1-209ENST00000496189 S100A2P29034 98 aa10.28□□□□□ -0.76
SF3A1-209ENST00000496189 KRTAP10-4P60372 401 aaPredicted RBP10.28□□□□□ -0.76
SF3A1-209ENST00000496189 PMCHL2Q9BQD1 86 aa10.27□□□□□ -0.77
SF3A1-209ENST00000496189 C20orf202A1L168 122 aa10.26□□□□□ -0.77
SF3A1-209ENST00000496189 KRTDAPP60985 99 aa10.26□□□□□ -0.77
SF3A1-209ENST00000496189 C3orf79P0CE67 100 aa10.25□□□□□ -0.77
SF3A1-209ENST00000496189 LINC01545Q5VT33 79 aa10.25□□□□□ -0.77
SF3A1-209ENST00000496189 FAM19A5Q7Z5A7 132 aaPredicted RBP10.25□□□□□ -0.77
SF3A1-209ENST00000496189 A0A1W2PNN7 141 aa10.24□□□□□ -0.77
SF3A1-209ENST00000496189 AKR1D1P51857 326 aa10.24□□□□□ -0.77
SF3A1-209ENST00000496189 PRR3P79522 188 aaKnown RBP10.24□□□□□ -0.77
SF3A1-209ENST00000496189 PLEKHB2Q96CS7 222 aa10.24□□□□□ -0.77
SF3A1-209ENST00000496189 LEPROTO15243 131 aa10.23□□□□□ -0.77
SF3A1-209ENST00000496189 COX17Q14061 63 aa10.23□□□□□ -0.77
SF3A1-209ENST00000496189 HIST3H2BBQ8N257 126 aa10.23□□□□□ -0.77
SF3A1-209ENST00000496189 FLG2Q5D862 2391 aaPredicted RBP10.23□□□□□ -0.77
SF3A1-209ENST00000496189 KRTAP29-1A8MX34 341 aaPredicted RBP10.22□□□□□ -0.77
SF3A1-209ENST00000496189 OXTP01178 125 aa10.22□□□□□ -0.77
SF3A1-209ENST00000496189 ZNF625Q96I27 306 aaPredicted RBP10.22□□□□□ -0.77
SF3A1-209ENST00000496189 ERG28Q9UKR5 140 aa10.22□□□□□ -0.77
SF3A1-209ENST00000496189 MYMXA0A1B0GTQ4 84 aa10.21□□□□□ -0.77
SF3A1-209ENST00000496189 LINC00587B1AMM8 73 aa10.21□□□□□ -0.77
SF3A1-209ENST00000496189 PFN2P35080 140 aa10.21□□□□□ -0.77
SF3A1-209ENST00000496189 HERV-K104P63124 156 aa10.21□□□□□ -0.77
SF3A1-209ENST00000496189 UBE2BP63146 152 aa10.21□□□□□ -0.77
SF3A1-209ENST00000496189 PHF5AQ7RTV0 110 aaKnown RBP10.21□□□□□ -0.77
SF3A1-209ENST00000496189 NDUFA12Q9UI09 145 aa10.21□□□□□ -0.77
SF3A1-209ENST00000496189 FAM168BA1KXE4 195 aa10.2□□□□□ -0.78
SF3A1-209ENST00000496189 J3QQQ9 107 aa10.2□□□□□ -0.78
SF3A1-209ENST00000496189 M0QXV9 152 aa10.2□□□□□ -0.78
SF3A1-209ENST00000496189 LGALS3P17931 250 aaKnown RBP10.2□□□□□ -0.78
SF3A1-209ENST00000496189 HIST1H2BLQ99880 126 aa10.2□□□□□ -0.78
SF3A1-209ENST00000496189 NMUP48645 174 aa10.19□□□□□ -0.78
SF3A1-209ENST00000496189 HNRNPA3P51991 378 aaKnown RBP10.19□□□□□ -0.78
SF3A1-209ENST00000496189 SNRPEP62304 92 aaKnown RBP10.19□□□□□ -0.78
SF3A1-209ENST00000496189 C9orf129Q5T035 196 aaKnown RBP10.19□□□□□ -0.78
SF3A1-209ENST00000496189 XAGE1AQ9HD64 81 aa10.19□□□□□ -0.78
SF3A1-209ENST00000496189 E9PLD3 99 aa10.18□□□□□ -0.78
SF3A1-209ENST00000496189 LINC00158P58513 81 aa10.18□□□□□ -0.78
SF3A1-209ENST00000496189 MYCBP2O75592 4640 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms