RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 STPG4Q8N801 248 aa10.31□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 IFI27L1Q96BM0 104 aa10.31□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 TRBV30A0A0K0K1B3 111 aa10.3□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 H3BRM9 83 aa10.3□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 LINC00310P59036 64 aa10.3□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 CKS1BP61024 79 aa10.3□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 SPINK8P0C7L1 97 aa10.29□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 TLX1NBP0CAT3 122 aa10.29□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 ABCA13Q86UQ4 5058 aa10.28□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 INAFM2P0DMQ5 153 aa10.28□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 ZNF22P17026 224 aaPredicted RBP10.28□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 CXCL5P42830 114 aa10.28□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 CHTOPQ9Y3Y2 248 aaKnown RBP10.28□□□□□ -0.76
MSH5-SAPCD1-206ENST00000491552 TRAV12-1A0A0B4J245 112 aa10.27□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 RPL37AP61513 92 aaKnown RBP10.27□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 COX7B2Q8TF08 81 aa10.27□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 VPS13BQ7Z7G8 4022 aa10.26□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 C11orf86A6NJI1 115 aa10.26□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 NUPR1O60356 82 aa10.26□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 LEPROTL1O95214 131 aa10.26□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 Q6ZRP5 223 aa10.26□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 PCLOQ9Y6V0 5065 aa10.25□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 F8VRH5 84 aa10.25□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 HIST1H2BKO60814 126 aa10.25□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 HIST1H2BJP06899 126 aa10.25□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 S100A1P23297 94 aa10.25□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 HIST1H2BOP23527 126 aa10.25□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 HIST1H2BBP33778 126 aa10.25□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 HIST1H2BDP58876 126 aa10.25□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 HIST1H2BCP62807 126 aa10.25□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 HIST2H2BEQ16778 126 aa10.25□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 C9orf116Q5BN46 136 aaPredicted RBP10.25□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.25□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 C7orf33Q8WU49 177 aa10.25□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 HIST1H2BHQ93079 126 aa10.25□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 HIST1H2BNQ99877 126 aa10.25□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 HIST1H2BMQ99879 126 aa10.25□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 NDUFC2-KCTD14E9PQ53 114 aa10.24□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 KRTAP10-4P60372 401 aaPredicted RBP10.24□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 TMEM170BQ5T4T1 132 aa10.24□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 IGLV5-39A0A0G2JS06 123 aa10.23□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 ATP6V1G1O75348 118 aa10.23□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 GAGE2EQ4V326 116 aa10.23□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 GAGE2DQ9UEU5 116 aa10.23□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 HSPB8Q9UJY1 196 aa10.23□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 A0A1W2PNN7 141 aa10.22□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 H0Y8G0 127 aa10.21□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 FABP4P15090 132 aa10.21□□□□□ -0.77
MSH5-SAPCD1-206ENST00000491552 ODF1Q14990 250 aa10.2□□□□□ -0.78
MSH5-SAPCD1-206ENST00000491552 TMEM223A0PJW6 202 aa10.17□□□□□ -0.78
MSH5-SAPCD1-206ENST00000491552 FAM168BA1KXE4 195 aa10.17□□□□□ -0.78
MSH5-SAPCD1-206ENST00000491552 C9orf129Q5T035 196 aaKnown RBP10.17□□□□□ -0.78
MSH5-SAPCD1-206ENST00000491552 FAM19A5Q7Z5A7 132 aaPredicted RBP10.17□□□□□ -0.78
MSH5-SAPCD1-206ENST00000491552 SRRM2Q9UQ35 2752 aaKnown RBP10.15□□□□□ -0.78
MSH5-SAPCD1-206ENST00000491552 PRR3P79522 188 aaKnown RBP10.15□□□□□ -0.78
MSH5-SAPCD1-206ENST00000491552 PHF5AQ7RTV0 110 aaKnown RBP10.15□□□□□ -0.78
MSH5-SAPCD1-206ENST00000491552 MAP1LC3CQ9BXW4 147 aa10.15□□□□□ -0.78
MSH5-SAPCD1-206ENST00000491552 PLNP26678 52 aa10.14□□□□□ -0.79
MSH5-SAPCD1-206ENST00000491552 SFTA2Q6UW10 78 aa10.14□□□□□ -0.79
MSH5-SAPCD1-206ENST00000491552 HNRNPA3P51991 378 aaKnown RBP10.13□□□□□ -0.79
MSH5-SAPCD1-206ENST00000491552 COA6Q5JTJ3 125 aaKnown RBP10.13□□□□□ -0.79
MSH5-SAPCD1-206ENST00000491552 XAGE1AQ9HD64 81 aa10.13□□□□□ -0.79
MSH5-SAPCD1-206ENST00000491552 M0QXV9 152 aa10.12□□□□□ -0.79
MSH5-SAPCD1-206ENST00000491552 DPM2O94777 84 aa10.12□□□□□ -0.79
MSH5-SAPCD1-206ENST00000491552 KRTAP7-1Q8IUC3 87 aa10.12□□□□□ -0.79
MSH5-SAPCD1-206ENST00000491552 ZNF625Q96I27 306 aaPredicted RBP10.12□□□□□ -0.79
MSH5-SAPCD1-206ENST00000491552 PMCHL2Q9BQD1 86 aa10.12□□□□□ -0.79
MSH5-SAPCD1-206ENST00000491552 IGKCP01834 107 aa10.11□□□□□ -0.79
MSH5-SAPCD1-206ENST00000491552 PFN2P35080 140 aa10.11□□□□□ -0.79
MSH5-SAPCD1-206ENST00000491552 ERG28Q9UKR5 140 aa10.11□□□□□ -0.79
MSH5-SAPCD1-206ENST00000491552 SYS1-DBNDD2H3BUS1 97 aa10.09□□□□□ -0.79
MSH5-SAPCD1-206ENST00000491552 COX17Q14061 63 aa10.09□□□□□ -0.79
MSH5-SAPCD1-206ENST00000491552 SERTAD4-AS1Q5TG53 156 aa10.09□□□□□ -0.79
MSH5-SAPCD1-206ENST00000491552 HERVK_113P61574 105 aa10.08□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 PSORS1C2Q9UIG4 136 aa10.08□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 LEPROTO15243 131 aa10.07□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 UBE2BP63146 152 aa10.07□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 PET117Q6UWS5 81 aa10.06□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 PLEKHB2Q96CS7 222 aa10.06□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 PLA2G2DQ9UNK4 145 aa10.06□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 C22orf24Q9Y442 160 aa10.06□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 PKHD1L1Q86WI1 4243 aa10.05□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 KRTAP29-1A8MX34 341 aaPredicted RBP10.05□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 HERV-K104P63124 156 aa10.05□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 TP73-AS1Q9UF72 201 aa10.05□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 NDUFA12Q9UI09 145 aa10.05□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 FLG2Q5D862 2391 aaPredicted RBP10.05□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 MYMXA0A1B0GTQ4 84 aa10.04□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 C3orf79P0CE67 100 aa10.04□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 LINC00158P58513 81 aa10.04□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 TSPEAR-AS2P59090 65 aa10.04□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 LBHQ53QV2 105 aaPredicted RBP10.04□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 C1orf137Q5JT78 98 aa10.04□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 LINC01545Q5VT33 79 aa10.04□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 KRTAP11-1Q8IUC1 163 aa10.04□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 SND1-IT1Q9HBX3 110 aa10.04□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 KRTDAPP60985 99 aa10.03□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 MEIG1Q5JSS6 88 aa10.03□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 MRPL55Q7Z7F7 128 aaKnown RBP10.03□□□□□ -0.8
MSH5-SAPCD1-206ENST00000491552 MYCBP2O75592 4640 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms