RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 ODF1Q14990 250 aa7.08□□□□□ -1.28
UBE4B-210ENST00000488228 ANKRD39Q53RE8 183 aa7.08□□□□□ -1.28
UBE4B-210ENST00000488228 UNQ6190/PRO20217Q6UXQ8 127 aa7.08□□□□□ -1.28
UBE4B-210ENST00000488228 SCXQ7RTU7 201 aa7.08□□□□□ -1.28
UBE4B-210ENST00000488228 FAT1Q14517 4588 aa7.08□□□□□ -1.28
UBE4B-210ENST00000488228 A0A096LNI7 61 aa7.07□□□□□ -1.28
UBE4B-210ENST00000488228 IGKV2-24A0A0C4DH68 120 aa7.07□□□□□ -1.28
UBE4B-210ENST00000488228 F8VRH5 84 aa7.07□□□□□ -1.28
UBE4B-210ENST00000488228 PRSS2P07478 247 aa7.07□□□□□ -1.28
UBE4B-210ENST00000488228 TMEM170BQ5T4T1 132 aa7.07□□□□□ -1.28
UBE4B-210ENST00000488228 Q8IZM0 81 aa7.07□□□□□ -1.28
UBE4B-210ENST00000488228 PMCHL2Q9BQD1 86 aa7.07□□□□□ -1.28
UBE4B-210ENST00000488228 KRTAP17-1Q9BYP8 105 aa7.07□□□□□ -1.28
UBE4B-210ENST00000488228 C6orf48Q9UBA6 75 aa7.07□□□□□ -1.28
UBE4B-210ENST00000488228 COX7B2Q8TF08 81 aa7.06□□□□□ -1.28
UBE4B-210ENST00000488228 IGLV5-39A0A0G2JS06 123 aa7.05□□□□□ -1.28
UBE4B-210ENST00000488228 CKS1BP61024 79 aa7.05□□□□□ -1.28
UBE4B-210ENST00000488228 RPL18AQ02543 176 aaKnown RBP7.05□□□□□ -1.28
UBE4B-210ENST00000488228 SPACA4Q8TDM5 124 aa7.05□□□□□ -1.28
UBE4B-210ENST00000488228 MAP1LC3CQ9BXW4 147 aa7.05□□□□□ -1.28
UBE4B-210ENST00000488228 ABCA13Q86UQ4 5058 aa7.05□□□□□ -1.28
UBE4B-210ENST00000488228 LOC107984640A0A0U1RRK4 108 aa7.04□□□□□ -1.28
UBE4B-210ENST00000488228 F8WDY8 70 aa7.04□□□□□ -1.28
UBE4B-210ENST00000488228 GAGE2BQ13066 116 aa7.04□□□□□ -1.28
UBE4B-210ENST00000488228 CIRBPQ14011 172 aaKnown RBP7.04□□□□□ -1.28
UBE4B-210ENST00000488228 C9orf116Q5BN46 136 aaPredicted RBP7.04□□□□□ -1.28
UBE4B-210ENST00000488228 C6orf226Q5I0X4 101 aa7.04□□□□□ -1.28
UBE4B-210ENST00000488228 CIRBP-AS1Q8TBR5 109 aa7.04□□□□□ -1.28
UBE4B-210ENST00000488228 TRBV30A0A0K0K1B3 111 aa7.03□□□□□ -1.28
UBE4B-210ENST00000488228 TMEM223A0PJW6 202 aa7.03□□□□□ -1.28
UBE4B-210ENST00000488228 SYS1-DBNDD2H3BUS1 97 aa7.03□□□□□ -1.28
UBE4B-210ENST00000488228 SMR3BP02814 79 aaPredicted RBP7.03□□□□□ -1.28
UBE4B-210ENST00000488228 RNF151Q2KHN1 245 aa7.03□□□□□ -1.28
UBE4B-210ENST00000488228 MAJINQ3KP22 176 aa7.03□□□□□ -1.28
UBE4B-210ENST00000488228 DPM2O94777 84 aa7.02□□□□□ -1.29
UBE4B-210ENST00000488228 PLNP26678 52 aa7.02□□□□□ -1.29
UBE4B-210ENST00000488228 CXCL5P42830 114 aa7.02□□□□□ -1.29
UBE4B-210ENST00000488228 PTTG1IPP53801 180 aa7.02□□□□□ -1.29
UBE4B-210ENST00000488228 PKIGQ9Y2B9 76 aa7.02□□□□□ -1.29
UBE4B-210ENST00000488228 VPS13BQ7Z7G8 4022 aa7.01□□□□□ -1.29
UBE4B-210ENST00000488228 A0A087WYN8 130 aa7.01□□□□□ -1.29
UBE4B-210ENST00000488228 IGKCP01834 107 aa7.01□□□□□ -1.29
UBE4B-210ENST00000488228 C3orf79P0CE67 100 aa7.01□□□□□ -1.29
UBE4B-210ENST00000488228 KRTDAPP60985 99 aa7.01□□□□□ -1.29
UBE4B-210ENST00000488228 Q6ZRP5 223 aa7.01□□□□□ -1.29
UBE4B-210ENST00000488228 HIST3H2BBQ8N257 126 aa7.01□□□□□ -1.29
UBE4B-210ENST00000488228 GAGE2EQ4V326 116 aa7□□□□□ -1.29
UBE4B-210ENST00000488228 GAGE2DQ9UEU5 116 aa7□□□□□ -1.29
UBE4B-210ENST00000488228 NDUFC2-KCTD14E9PQ53 114 aa6.99□□□□□ -1.29
UBE4B-210ENST00000488228 TLX1NBP0CAT3 122 aa6.99□□□□□ -1.29
UBE4B-210ENST00000488228 TSPEAR-AS2P59090 65 aa6.99□□□□□ -1.29
UBE4B-210ENST00000488228 LINC01545Q5VT33 79 aa6.99□□□□□ -1.29
UBE4B-210ENST00000488228 PET117Q6UWS5 81 aa6.99□□□□□ -1.29
UBE4B-210ENST00000488228 LINC00528Q8N1L1 170 aa6.99□□□□□ -1.29
UBE4B-210ENST00000488228 Q8N1X5 172 aa6.99□□□□□ -1.29
UBE4B-210ENST00000488228 STPG4Q8N801 248 aa6.99□□□□□ -1.29
UBE4B-210ENST00000488228 DPH3Q96FX2 82 aa6.99□□□□□ -1.29
UBE4B-210ENST00000488228 HIST1H2BLQ99880 126 aa6.99□□□□□ -1.29
UBE4B-210ENST00000488228 KRTAP4-5Q9BYR2 181 aa6.99□□□□□ -1.29
UBE4B-210ENST00000488228 S100A2P29034 98 aa6.98□□□□□ -1.29
UBE4B-210ENST00000488228 Q5VSD8 79 aa6.98□□□□□ -1.29
UBE4B-210ENST00000488228 ZNF625Q96I27 306 aaPredicted RBP6.98□□□□□ -1.29
UBE4B-210ENST00000488228 PLAC8Q9NZF1 115 aa6.98□□□□□ -1.29
UBE4B-210ENST00000488228 LINC00474Q9P2X8 69 aa6.98□□□□□ -1.29
UBE4B-210ENST00000488228 PCLOQ9Y6V0 5065 aa6.98□□□□□ -1.29
UBE4B-210ENST00000488228 FAM168BA1KXE4 195 aa6.97□□□□□ -1.29
UBE4B-210ENST00000488228 SNRPEP62304 92 aaKnown RBP6.97□□□□□ -1.29
UBE4B-210ENST00000488228 SRRM2Q9UQ35 2752 aaKnown RBP6.97□□□□□ -1.29
UBE4B-210ENST00000488228 A0A1W2PNN7 141 aa6.96□□□□□ -1.3
UBE4B-210ENST00000488228 HERVK_113P61574 105 aa6.96□□□□□ -1.3
UBE4B-210ENST00000488228 C9orf129Q5T035 196 aaKnown RBP6.96□□□□□ -1.3
UBE4B-210ENST00000488228 FAM19A5Q7Z5A7 132 aaPredicted RBP6.96□□□□□ -1.3
UBE4B-210ENST00000488228 XAGE1AQ9HD64 81 aa6.96□□□□□ -1.3
UBE4B-210ENST00000488228 EPM2AB3EWF7 344 aa6.95□□□□□ -1.3
UBE4B-210ENST00000488228 LEPROTO15243 131 aa6.95□□□□□ -1.3
UBE4B-210ENST00000488228 PFN2P35080 140 aa6.95□□□□□ -1.3
UBE4B-210ENST00000488228 NDUFA12Q9UI09 145 aa6.95□□□□□ -1.3
UBE4B-210ENST00000488228 ERG28Q9UKR5 140 aa6.95□□□□□ -1.3
UBE4B-210ENST00000488228 PKHD1L1Q86WI1 4243 aa6.95□□□□□ -1.3
UBE4B-210ENST00000488228 C20orf202A1L168 122 aa6.94□□□□□ -1.3
UBE4B-210ENST00000488228 C5orf52A6NGY3 159 aa6.94□□□□□ -1.3
UBE4B-210ENST00000488228 ATOH7Q8N100 152 aa6.94□□□□□ -1.3
UBE4B-210ENST00000488228 PLEKHB2Q96CS7 222 aa6.94□□□□□ -1.3
UBE4B-210ENST00000488228 FAM229AH3BQW9 127 aa6.93□□□□□ -1.3
UBE4B-210ENST00000488228 J3QQQ9 107 aa6.93□□□□□ -1.3
UBE4B-210ENST00000488228 SFTA2Q6UW10 78 aa6.93□□□□□ -1.3
UBE4B-210ENST00000488228 KRTAP7-1Q8IUC3 87 aa6.93□□□□□ -1.3
UBE4B-210ENST00000488228 A0A0U1RRA0 63 aa6.92□□□□□ -1.3
UBE4B-210ENST00000488228 E9PLD3 99 aa6.92□□□□□ -1.3
UBE4B-210ENST00000488228 LGALS3P17931 250 aaKnown RBP6.92□□□□□ -1.3
UBE4B-210ENST00000488228 SERTAD4-AS1Q5TG53 156 aa6.92□□□□□ -1.3
UBE4B-210ENST00000488228 IGKV2D-26A0A0A0MRZ7 120 aa6.91□□□□□ -1.3
UBE4B-210ENST00000488228 M0QXV9 152 aa6.91□□□□□ -1.3
UBE4B-210ENST00000488228 KRTAP10-4P60372 401 aaPredicted RBP6.91□□□□□ -1.3
UBE4B-210ENST00000488228 RPL37AP61513 92 aaKnown RBP6.91□□□□□ -1.3
UBE4B-210ENST00000488228 MEIG1Q5JSS6 88 aa6.91□□□□□ -1.3
UBE4B-210ENST00000488228 PHF5AQ7RTV0 110 aaKnown RBP6.91□□□□□ -1.3
UBE4B-210ENST00000488228 C7orf33Q8WU49 177 aa6.91□□□□□ -1.3
UBE4B-210ENST00000488228 MYMXA0A1B0GTQ4 84 aa6.9□□□□□ -1.3
UBE4B-210ENST00000488228 PLA2G1BP04054 148 aaKnown RBP6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms