RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 TRAV12-3A0A0B4J271 114 aa5.46□□□□□ -1.54
USP4-211ENST00000485450 DEFB104AQ8WTQ1 72 aa5.46□□□□□ -1.54
USP4-211ENST00000485450 X6R8D5 127 aa5.46□□□□□ -1.54
USP4-211ENST00000485450 IGHV3-23P01764 117 aa5.46□□□□□ -1.54
USP4-211ENST00000485450 VPREB1P12018 145 aa5.46□□□□□ -1.54
USP4-211ENST00000485450 RNASE3P12724 160 aaKnown RBP5.46□□□□□ -1.54
USP4-211ENST00000485450 RNASE4P34096 147 aaKnown RBP5.45□□□□□ -1.54
USP4-211ENST00000485450 MRPS36P82909 103 aaKnown RBP5.45□□□□□ -1.54
USP4-211ENST00000485450 ZFAND2AQ8N6M9 145 aa5.45□□□□□ -1.54
USP4-211ENST00000485450 TLN2Q9Y4G6 2542 aa5.45□□□□□ -1.54
USP4-211ENST00000485450 MUC4Q99102 2169 aa5.45□□□□□ -1.54
USP4-211ENST00000485450 IGLV4-3A0A075B6K6 122 aa5.45□□□□□ -1.54
USP4-211ENST00000485450 IGKV3D-7A0A0C4DH55 119 aa5.45□□□□□ -1.54
USP4-211ENST00000485450 K7EIL1 84 aa5.45□□□□□ -1.54
USP4-211ENST00000485450 C11orf45Q8TAV5 145 aa5.45□□□□□ -1.54
USP4-211ENST00000485450 UBE2D4Q9Y2X8 147 aa5.45□□□□□ -1.54
USP4-211ENST00000485450 COL7A1Q02388 2944 aa5.45□□□□□ -1.54
USP4-211ENST00000485450 IGHV3OR16-8A0A075B7F1 116 aa5.45□□□□□ -1.54
USP4-211ENST00000485450 CMC4P56277 68 aaPredicted RBP5.45□□□□□ -1.54
USP4-211ENST00000485450 DEFB136Q30KP8 78 aa5.45□□□□□ -1.54
USP4-211ENST00000485450 C9orf129Q5T035 196 aaKnown RBP5.45□□□□□ -1.54
USP4-211ENST00000485450 PRR15Q8IV56 129 aa5.45□□□□□ -1.54
USP4-211ENST00000485450 CLEC19AQ6UXS0 136 aa5.44□□□□□ -1.54
USP4-211ENST00000485450 C20orf203Q8NBC4 194 aa5.44□□□□□ -1.54
USP4-211ENST00000485450 VSIG2Q96IQ7 327 aa5.44□□□□□ -1.54
USP4-211ENST00000485450 TM2D3Q9BRN9 247 aa5.44□□□□□ -1.54
USP4-211ENST00000485450 TMEM243Q9BU79 118 aa5.44□□□□□ -1.54
USP4-211ENST00000485450 DNAL4O96015 105 aa5.44□□□□□ -1.54
USP4-211ENST00000485450 XCL1P47992 114 aa5.44□□□□□ -1.54
USP4-211ENST00000485450 XCL2Q9UBD3 114 aa5.44□□□□□ -1.54
USP4-211ENST00000485450 K7EQG2 157 aa5.44□□□□□ -1.54
USP4-211ENST00000485450 B9D2Q9BPU9 175 aa5.44□□□□□ -1.54
USP4-211ENST00000485450 GNRH2O43555 120 aa5.43□□□□□ -1.54
USP4-211ENST00000485450 LINC00846Q9NV44 126 aa5.43□□□□□ -1.54
USP4-211ENST00000485450 CCKP06307 115 aa5.43□□□□□ -1.54
USP4-211ENST00000485450 OBSCN-AS1Q96MR7 158 aa5.43□□□□□ -1.54
USP4-211ENST00000485450 FRAS1Q86XX4 4008 aa5.43□□□□□ -1.54
USP4-211ENST00000485450 RPL28P46779 137 aaKnown RBP5.43□□□□□ -1.54
USP4-211ENST00000485450 C6orf223Q8N319 242 aa5.43□□□□□ -1.54
USP4-211ENST00000485450 FAM218AQ96MZ4 157 aa5.43□□□□□ -1.54
USP4-211ENST00000485450 LINC00467Q9BRT7 94 aa5.43□□□□□ -1.54
USP4-211ENST00000485450 COL6A5A8TX70 2615 aa5.42□□□□□ -1.54
USP4-211ENST00000485450 VPS13DQ5THJ4 4388 aa5.42□□□□□ -1.54
USP4-211ENST00000485450 IGHV3-35A0A0C4DH35 117 aa5.42□□□□□ -1.54
USP4-211ENST00000485450 IGHV3-66A0A0C4DH42 116 aa5.42□□□□□ -1.54
USP4-211ENST00000485450 PAX4O43316 350 aa5.42□□□□□ -1.54
USP4-211ENST00000485450 LINC00308Q8TCZ7 52 aa5.42□□□□□ -1.54
USP4-211ENST00000485450 FAM104AQ969W3 186 aa5.42□□□□□ -1.54
USP4-211ENST00000485450 STAB1Q9NY15 2570 aa5.42□□□□□ -1.54
USP4-211ENST00000485450 TRBV7-6A0A0J9YX20 115 aa5.41□□□□□ -1.54
USP4-211ENST00000485450 F5H697 171 aa5.41□□□□□ -1.54
USP4-211ENST00000485450 STARD9Q9P2P6 4700 aa5.41□□□□□ -1.54
USP4-211ENST00000485450 RBMY1BA6NDE4 496 aaKnown RBP5.41□□□□□ -1.54
USP4-211ENST00000485450 RBMY1EA6NEQ0 496 aaKnown RBP5.41□□□□□ -1.54
USP4-211ENST00000485450 NDUFA1O15239 70 aa5.41□□□□□ -1.54
USP4-211ENST00000485450 RBMY1DP0C7P1 496 aaKnown RBP5.41□□□□□ -1.54
USP4-211ENST00000485450 RBMY1A1P0DJD3 496 aaKnown RBP5.41□□□□□ -1.54
USP4-211ENST00000485450 RBMY1CP0DJD4 496 aa5.41□□□□□ -1.54
USP4-211ENST00000485450 RBMY1FQ15415 496 aaKnown RBP5.41□□□□□ -1.54
USP4-211ENST00000485450 ATRQ13535 2644 aa5.41□□□□□ -1.54
USP4-211ENST00000485450 IGHV3-11P01762 117 aa5.41□□□□□ -1.54
USP4-211ENST00000485450 TNP2Q05952 138 aa5.41□□□□□ -1.54
USP4-211ENST00000485450 M0QY20 66 aa5.4□□□□□ -1.54
USP4-211ENST00000485450 ODF3L2Q3SX64 289 aa5.4□□□□□ -1.54
USP4-211ENST00000485450 C20orf197Q8N268 126 aa5.4□□□□□ -1.54
USP4-211ENST00000485450 CSNK1G2-AS1Q8NCQ2 148 aa5.4□□□□□ -1.54
USP4-211ENST00000485450 COPS9Q8WXC6 57 aa5.4□□□□□ -1.54
USP4-211ENST00000485450 J3QL48 77 aa5.4□□□□□ -1.54
USP4-211ENST00000485450 SNRPD3P62318 126 aaKnown RBP5.4□□□□□ -1.54
USP4-211ENST00000485450 KNCNA6PVL3 124 aa5.4□□□□□ -1.55
USP4-211ENST00000485450 GIG44P09565 113 aaPredicted RBP5.4□□□□□ -1.55
USP4-211ENST00000485450 C14orf132Q9NPU4 83 aa5.4□□□□□ -1.55
USP4-211ENST00000485450 IGHV3OR16-13A0A075B7E8 117 aa5.39□□□□□ -1.55
USP4-211ENST00000485450 IGHV3-74A0A0B4J1X5 117 aa5.39□□□□□ -1.55
USP4-211ENST00000485450 ATP5EP2Q5VTU8 51 aa5.39□□□□□ -1.55
USP4-211ENST00000485450 OVOL2Q9BRP0 275 aa5.39□□□□□ -1.55
USP4-211ENST00000485450 Q9HAA7 133 aa5.39□□□□□ -1.55
USP4-211ENST00000485450 RHPN1-AS1Q9BWJ2 59 aa5.39□□□□□ -1.55
USP4-211ENST00000485450 IBA57-AS1B1ANH7 110 aa5.38□□□□□ -1.55
USP4-211ENST00000485450 BCE1O60756 84 aa5.38□□□□□ -1.55
USP4-211ENST00000485450 KLKP1Q107X0 134 aa5.38□□□□□ -1.55
USP4-211ENST00000485450 SOSTDC1Q6X4U4 206 aa5.38□□□□□ -1.55
USP4-211ENST00000485450 MAP6D1Q9H9H5 199 aa5.38□□□□□ -1.55
USP4-211ENST00000485450 Q9UF83 564 aa5.38□□□□□ -1.55
USP4-211ENST00000485450 C11orf68Q9H3H3 251 aaKnown RBP5.37□□□□□ -1.55
USP4-211ENST00000485450 IGHV3-49A0A0A0MS15 119 aa5.37□□□□□ -1.55
USP4-211ENST00000485450 S100A7L2Q5SY68 101 aa5.37□□□□□ -1.55
USP4-211ENST00000485450 RBM12B-AS1Q9P1G2 102 aa5.37□□□□□ -1.55
USP4-211ENST00000485450 CD164L2Q6UWJ8 174 aa5.37□□□□□ -1.55
USP4-211ENST00000485450 TRAV23DV6A0A075B6W5 121 aa5.36□□□□□ -1.55
USP4-211ENST00000485450 TRBV10-3A0A0K0K1G6 114 aa5.36□□□□□ -1.55
USP4-211ENST00000485450 A8MU10 97 aa5.36□□□□□ -1.55
USP4-211ENST00000485450 FAM74A4Q5TZK3 123 aa5.36□□□□□ -1.55
USP4-211ENST00000485450 IGLV5-45A0A087WSX0 123 aa5.36□□□□□ -1.55
USP4-211ENST00000485450 RMI2Q96E14 147 aa5.36□□□□□ -1.55
USP4-211ENST00000485450 PLAC8L1A1L4L8 177 aa5.36□□□□□ -1.55
USP4-211ENST00000485450 DNAH17Q9UFH2 4485 aa5.36□□□□□ -1.55
USP4-211ENST00000485450 TRAV7A0A075B6U4 112 aa5.35□□□□□ -1.55
USP4-211ENST00000485450 KLLNB2CW77 178 aa5.35□□□□□ -1.55
USP4-211ENST00000485450 PLECQ15149 4684 aaKnown RBP5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms