RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 SPAG11BQ08648 103 aa6.74□□□□□ -1.33
USP39-215ENST00000481409 C1orf134Q5TEV5 83 aa6.74□□□□□ -1.33
USP39-215ENST00000481409 NDUFA12Q9UI09 145 aa6.74□□□□□ -1.33
USP39-215ENST00000481409 ZNF815PA8K554 130 aa6.73□□□□□ -1.33
USP39-215ENST00000481409 KIAA0087Q14695 138 aa6.73□□□□□ -1.33
USP39-215ENST00000481409 Q6ZRN7 208 aaPredicted RBP6.73□□□□□ -1.33
USP39-215ENST00000481409 ZNF625Q96I27 306 aaPredicted RBP6.73□□□□□ -1.33
USP39-215ENST00000481409 MIEN1Q9BRT3 115 aa6.73□□□□□ -1.33
USP39-215ENST00000481409 TOMM7Q9P0U1 55 aa6.73□□□□□ -1.33
USP39-215ENST00000481409 TENM2Q9NT68 2774 aa6.73□□□□□ -1.33
USP39-215ENST00000481409 TIMM17BO60830 172 aa6.72□□□□□ -1.33
USP39-215ENST00000481409 CIRBPQ14011 172 aaKnown RBP6.72□□□□□ -1.33
USP39-215ENST00000481409 COX17Q14061 63 aa6.72□□□□□ -1.33
USP39-215ENST00000481409 C15orf56Q8N910 161 aa6.72□□□□□ -1.33
USP39-215ENST00000481409 NTN5Q8WTR8 489 aaPredicted RBP6.72□□□□□ -1.33
USP39-215ENST00000481409 C14orf144Q96I85 54 aa6.72□□□□□ -1.33
USP39-215ENST00000481409 HIGD1BQ9P298 99 aa6.72□□□□□ -1.33
USP39-215ENST00000481409 TRBV30A0A0K0K1B3 111 aa6.71□□□□□ -1.34
USP39-215ENST00000481409 USP17L23D6RBM5 183 aa6.71□□□□□ -1.34
USP39-215ENST00000481409 M0R2N4 97 aa6.71□□□□□ -1.34
USP39-215ENST00000481409 TSPEAR-AS2P59090 65 aa6.71□□□□□ -1.34
USP39-215ENST00000481409 RNF151Q2KHN1 245 aa6.71□□□□□ -1.34
USP39-215ENST00000481409 SCGB1D4Q6XE38 83 aa6.71□□□□□ -1.34
USP39-215ENST00000481409 Q6ZVH6 145 aa6.71□□□□□ -1.34
USP39-215ENST00000481409 PCP2Q8IVA1 136 aa6.71□□□□□ -1.34
USP39-215ENST00000481409 MAPKAPK5-AS1Q8N8E1 139 aa6.71□□□□□ -1.34
USP39-215ENST00000481409 PKIGQ9Y2B9 76 aa6.71□□□□□ -1.34
USP39-215ENST00000481409 TMEM238C9JI98 176 aa6.7□□□□□ -1.34
USP39-215ENST00000481409 COPS9Q8WXC6 57 aa6.7□□□□□ -1.34
USP39-215ENST00000481409 PPDPFQ9H3Y8 114 aa6.7□□□□□ -1.34
USP39-215ENST00000481409 VPS13DQ5THJ4 4388 aa6.69□□□□□ -1.34
USP39-215ENST00000481409 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.69□□□□□ -1.34
USP39-215ENST00000481409 A0A0J9YXY3 114 aa6.69□□□□□ -1.34
USP39-215ENST00000481409 TAL2Q16559 108 aa6.69□□□□□ -1.34
USP39-215ENST00000481409 CAMK2N2Q96S95 79 aa6.69□□□□□ -1.34
USP39-215ENST00000481409 SPANXB1Q9NS25 103 aaPredicted RBP6.69□□□□□ -1.34
USP39-215ENST00000481409 LRCOL1A6NCL2 159 aa6.68□□□□□ -1.34
USP39-215ENST00000481409 HNRNPA3P51991 378 aaKnown RBP6.68□□□□□ -1.34
USP39-215ENST00000481409 CNBPP62633 177 aaKnown RBP6.68□□□□□ -1.34
USP39-215ENST00000481409 SYCNQ0VAF6 134 aa6.68□□□□□ -1.34
USP39-215ENST00000481409 KRTAP4-8Q9BYQ9 185 aa6.68□□□□□ -1.34
USP39-215ENST00000481409 PRO1933Q9H354 126 aa6.68□□□□□ -1.34
USP39-215ENST00000481409 PTTG1IPP53801 180 aa6.67□□□□□ -1.34
USP39-215ENST00000481409 HIGD2BQ4VC39 106 aa6.67□□□□□ -1.34
USP39-215ENST00000481409 MEIG1Q5JSS6 88 aa6.67□□□□□ -1.34
USP39-215ENST00000481409 SPANXDQ9BXN6 97 aa6.67□□□□□ -1.34
USP39-215ENST00000481409 TTTY13Q9BZ97 58 aa6.67□□□□□ -1.34
USP39-215ENST00000481409 SPANXCQ9NY87 97 aa6.67□□□□□ -1.34
USP39-215ENST00000481409 ALMS1Q8TCU4 4167 aa6.66□□□□□ -1.34
USP39-215ENST00000481409 IFITM1P13164 125 aa6.66□□□□□ -1.34
USP39-215ENST00000481409 DDTP30046 118 aa6.66□□□□□ -1.34
USP39-215ENST00000481409 LINC00336Q6ZUF6 198 aa6.66□□□□□ -1.34
USP39-215ENST00000481409 Q8N814 137 aa6.66□□□□□ -1.34
USP39-215ENST00000481409 CARD19Q96LW7 228 aa6.66□□□□□ -1.34
USP39-215ENST00000481409 TP73-AS1Q9UF72 201 aa6.66□□□□□ -1.34
USP39-215ENST00000481409 ERG28Q9UKR5 140 aa6.66□□□□□ -1.34
USP39-215ENST00000481409 DNAH1Q9P2D7 4330 aa6.66□□□□□ -1.34
USP39-215ENST00000481409 LYSTQ99698 3801 aa6.65□□□□□ -1.34
USP39-215ENST00000481409 A0A087WTM6 91 aa6.65□□□□□ -1.34
USP39-215ENST00000481409 TLX1NBP0CAT3 122 aa6.65□□□□□ -1.34
USP39-215ENST00000481409 C2orf82Q6UX34 121 aa6.65□□□□□ -1.34
USP39-215ENST00000481409 UNQ6190/PRO20217Q6UXQ8 127 aa6.65□□□□□ -1.34
USP39-215ENST00000481409 C2orf91Q6ZV80 131 aa6.65□□□□□ -1.34
USP39-215ENST00000481409 HSD52Q0P140 79 aa6.64□□□□□ -1.35
USP39-215ENST00000481409 SRSF9Q13242 221 aaKnown RBP eCLIP6.64□□□□□ -1.35
USP39-215ENST00000481409 Q6ZRU5 148 aa6.64□□□□□ -1.35
USP39-215ENST00000481409 LITAFQ99732 161 aa6.64□□□□□ -1.35
USP39-215ENST00000481409 DNAH6Q9C0G6 4158 aa6.63□□□□□ -1.35
USP39-215ENST00000481409 LOC107984156A0A0G2JMH3 177 aa6.63□□□□□ -1.35
USP39-215ENST00000481409 NDUFC2-KCTD14E9PQ53 114 aa6.63□□□□□ -1.35
USP39-215ENST00000481409 M0R143 59 aa6.63□□□□□ -1.35
USP39-215ENST00000481409 LINC00158P58513 81 aa6.63□□□□□ -1.35
USP39-215ENST00000481409 ARL17AQ8IVW1 177 aa6.63□□□□□ -1.35
USP39-215ENST00000481409 HIST1H4GQ99525 98 aa6.63□□□□□ -1.35
USP39-215ENST00000481409 C6orf48Q9UBA6 75 aa6.63□□□□□ -1.35
USP39-215ENST00000481409 LECT2O14960 151 aa6.62□□□□□ -1.35
USP39-215ENST00000481409 RTL8CO15255 209 aa6.62□□□□□ -1.35
USP39-215ENST00000481409 SMIM13P0DJ93 91 aa6.62□□□□□ -1.35
USP39-215ENST00000481409 RPL24P83731 157 aaKnown RBP6.62□□□□□ -1.35
USP39-215ENST00000481409 WFDC2Q14508 124 aa6.62□□□□□ -1.35
USP39-215ENST00000481409 C10orf25Q5T742 122 aa6.62□□□□□ -1.35
USP39-215ENST00000481409 LOC107984640A0A0U1RRK4 108 aa6.61□□□□□ -1.35
USP39-215ENST00000481409 PFN2P35080 140 aa6.61□□□□□ -1.35
USP39-215ENST00000481409 CEND1Q8N111 149 aa6.61□□□□□ -1.35
USP39-215ENST00000481409 MIR7-3HGQ8N6C7 128 aa6.61□□□□□ -1.35
USP39-215ENST00000481409 C9orf163Q8N9P6 203 aa6.61□□□□□ -1.35
USP39-215ENST00000481409 LINC00526Q96FQ7 95 aa6.61□□□□□ -1.35
USP39-215ENST00000481409 SLPIP03973 132 aa6.6□□□□□ -1.35
USP39-215ENST00000481409 ADAMTSL4-AS1Q5T5F5 129 aa6.6□□□□□ -1.35
USP39-215ENST00000481409 LINC00474Q9P2X8 69 aa6.6□□□□□ -1.35
USP39-215ENST00000481409 NDUFC2O95298 119 aa6.59□□□□□ -1.35
USP39-215ENST00000481409 CTAG1AP78358 180 aa6.59□□□□□ -1.35
USP39-215ENST00000481409 LINC00308Q8TCZ7 52 aa6.59□□□□□ -1.35
USP39-215ENST00000481409 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.58□□□□□ -1.36
USP39-215ENST00000481409 C9orf116Q5BN46 136 aaPredicted RBP6.58□□□□□ -1.36
USP39-215ENST00000481409 MUSTN1Q8IVN3 82 aa6.58□□□□□ -1.36
USP39-215ENST00000481409 KMT2AQ03164 3969 aa6.58□□□□□ -1.36
USP39-215ENST00000481409 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.57□□□□□ -1.36
USP39-215ENST00000481409 C16orf90A8MZG2 172 aa6.57□□□□□ -1.36
USP39-215ENST00000481409 Q6ZRP5 223 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms