RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 TMEM256-PLSCR3K7ERE1 68 aa13.11□□□□□ -0.31
CCDC88B-207ENST00000479965 A0A1W2PRX2 142 aa13.1□□□□□ -0.31
CCDC88B-207ENST00000479965 FN1P02751 2386 aaKnown RBP13.1□□□□□ -0.31
CCDC88B-207ENST00000479965 EPG5Q9HCE0 2579 aa13.1□□□□□ -0.31
CCDC88B-207ENST00000479965 HAMPP81172 84 aa13.1□□□□□ -0.31
CCDC88B-207ENST00000479965 ATP5EP2Q5VTU8 51 aa13.08□□□□□ -0.31
CCDC88B-207ENST00000479965 IL17DQ8TAD2 202 aa13.08□□□□□ -0.31
CCDC88B-207ENST00000479965 SNURFQ9Y675 71 aa13.08□□□□□ -0.31
CCDC88B-207ENST00000479965 TRBV6-8A0A0A6YYG3 113 aa13.08□□□□□ -0.32
CCDC88B-207ENST00000479965 A0A096LNT2 108 aa13.06□□□□□ -0.32
CCDC88B-207ENST00000479965 LY6G6DO95868 133 aa13.06□□□□□ -0.32
CCDC88B-207ENST00000479965 LAMTOR3Q9UHA4 124 aa13.06□□□□□ -0.32
CCDC88B-207ENST00000479965 SONP18583 2426 aaKnown RBP13.06□□□□□ -0.32
CCDC88B-207ENST00000479965 FLNCQ14315 2725 aa13.06□□□□□ -0.32
CCDC88B-207ENST00000479965 LINC00959A0A1B0GUT2 108 aa13.06□□□□□ -0.32
CCDC88B-207ENST00000479965 RPL35AP18077 110 aaKnown RBP13.06□□□□□ -0.32
CCDC88B-207ENST00000479965 LINC01356Q8N9X3 169 aa13.06□□□□□ -0.32
CCDC88B-207ENST00000479965 C6orf99Q4VX62 202 aa13.06□□□□□ -0.32
CCDC88B-207ENST00000479965 AKAP9Q99996 3911 aa13.05□□□□□ -0.32
CCDC88B-207ENST00000479965 NANOS2P60321 138 aaKnown RBP13.05□□□□□ -0.32
CCDC88B-207ENST00000479965 WFDC10AQ9H1F0 79 aa13.05□□□□□ -0.32
CCDC88B-207ENST00000479965 NDUFC2-KCTD14E9PQ53 114 aa13.04□□□□□ -0.32
CCDC88B-207ENST00000479965 ANKRD17O75179 2603 aaKnown RBP13.03□□□□□ -0.32
CCDC88B-207ENST00000479965 M0R2N4 97 aa13.02□□□□□ -0.32
CCDC88B-207ENST00000479965 ACACBO00763 2458 aa13.02□□□□□ -0.32
CCDC88B-207ENST00000479965 NAV2Q8IVL1 2488 aa13.02□□□□□ -0.33
CCDC88B-207ENST00000479965 NBPF19A0A087WUL8 3843 aa13.02□□□□□ -0.33
CCDC88B-207ENST00000479965 A0A096LPF7 62 aa13.02□□□□□ -0.33
CCDC88B-207ENST00000479965 C9orf116Q5BN46 136 aaPredicted RBP13.02□□□□□ -0.33
CCDC88B-207ENST00000479965 C4orf3Q8WVX3 66 aa13.02□□□□□ -0.33
CCDC88B-207ENST00000479965 H7BZZ5 65 aa13.02□□□□□ -0.33
CCDC88B-207ENST00000479965 RBM3P98179 157 aaKnown RBP13.02□□□□□ -0.33
CCDC88B-207ENST00000479965 Q6YL49 198 aa13.02□□□□□ -0.33
CCDC88B-207ENST00000479965 RMI2Q96E14 147 aa13.01□□□□□ -0.33
CCDC88B-207ENST00000479965 FAM208BQ5VWN6 2430 aa13.01□□□□□ -0.33
CCDC88B-207ENST00000479965 TRAV10A0A0B4J240 114 aa13□□□□□ -0.33
CCDC88B-207ENST00000479965 DEFB130BP0DP73 79 aa13□□□□□ -0.33
CCDC88B-207ENST00000479965 DEFB130AP0DP74 79 aa13□□□□□ -0.33
CCDC88B-207ENST00000479965 NF1P21359 2839 aa13□□□□□ -0.33
CCDC88B-207ENST00000479965 LRRK2Q5S007 2527 aa13□□□□□ -0.33
CCDC88B-207ENST00000479965 TEX15Q9BXT5 2789 aa13□□□□□ -0.33
CCDC88B-207ENST00000479965 LINC00167Q96N53 147 aa12.99□□□□□ -0.33
CCDC88B-207ENST00000479965 LINC00336Q6ZUF6 198 aa12.99□□□□□ -0.33
CCDC88B-207ENST00000479965 LYPD5Q6UWN5 251 aa12.99□□□□□ -0.33
CCDC88B-207ENST00000479965 ZFYVE26Q68DK2 2539 aa12.98□□□□□ -0.33
CCDC88B-207ENST00000479965 SETXQ7Z333 2677 aaKnown RBP12.98□□□□□ -0.33
CCDC88B-207ENST00000479965 IGLV10-54A0A075B6I4 117 aa12.98□□□□□ -0.33
CCDC88B-207ENST00000479965 TRAV7A0A075B6U4 112 aa12.98□□□□□ -0.33
CCDC88B-207ENST00000479965 SCXQ7RTU7 201 aa12.98□□□□□ -0.33
CCDC88B-207ENST00000479965 SERP1Q9Y6X1 66 aa12.98□□□□□ -0.33
CCDC88B-207ENST00000479965 NBEAL2Q6ZNJ1 2754 aa12.98□□□□□ -0.33
CCDC88B-207ENST00000479965 MYO18BQ8IUG5 2567 aa12.98□□□□□ -0.33
CCDC88B-207ENST00000479965 LINC01547P58512 204 aaPredicted RBP12.97□□□□□ -0.33
CCDC88B-207ENST00000479965 C16orf74Q96GX8 76 aa12.97□□□□□ -0.33
CCDC88B-207ENST00000479965 TRBV10-3A0A0K0K1G6 114 aa12.97□□□□□ -0.33
CCDC88B-207ENST00000479965 PLAC8L1A1L4L8 177 aa12.97□□□□□ -0.33
CCDC88B-207ENST00000479965 F8WEM9 126 aa12.97□□□□□ -0.33
CCDC88B-207ENST00000479965 Q6ZQT0 140 aa12.96□□□□□ -0.34
CCDC88B-207ENST00000479965 Q8IZM0 81 aa12.95□□□□□ -0.34
CCDC88B-207ENST00000479965 LINC00269Q8N2A0 174 aa12.95□□□□□ -0.34
CCDC88B-207ENST00000479965 C1orf43Q9BWL3 253 aa12.95□□□□□ -0.34
CCDC88B-207ENST00000479965 WFDC11Q8NEX6 87 aa12.95□□□□□ -0.34
CCDC88B-207ENST00000479965 Q6ZVQ6 151 aa12.95□□□□□ -0.34
CCDC88B-207ENST00000479965 CACNA1AO00555 2505 aa12.94□□□□□ -0.34
CCDC88B-207ENST00000479965 GIG44P09565 113 aaPredicted RBP12.94□□□□□ -0.34
CCDC88B-207ENST00000479965 ZNF843Q8N446 348 aa12.93□□□□□ -0.34
CCDC88B-207ENST00000479965 MRAPQ8TCY5 172 aa12.93□□□□□ -0.34
CCDC88B-207ENST00000479965 DOPEY1Q5JWR5 2465 aa12.93□□□□□ -0.34
CCDC88B-207ENST00000479965 PRB1P04280 392 aa12.93□□□□□ -0.34
CCDC88B-207ENST00000479965 Q8NDZ9 215 aa12.93□□□□□ -0.34
CCDC88B-207ENST00000479965 GYPEP15421 78 aa12.92□□□□□ -0.34
CCDC88B-207ENST00000479965 LINC00575Q6W349 94 aa12.92□□□□□ -0.34
CCDC88B-207ENST00000479965 ABCA12Q86UK0 2595 aa12.92□□□□□ -0.34
CCDC88B-207ENST00000479965 SPATA3Q8NHX4 192 aa12.92□□□□□ -0.34
CCDC88B-207ENST00000479965 CFAP46Q8IYW2 2715 aa12.91□□□□□ -0.34
CCDC88B-207ENST00000479965 J3QLI3 93 aa12.91□□□□□ -0.34
CCDC88B-207ENST00000479965 ZNF561-AS1K7EIQ3 104 aa12.91□□□□□ -0.34
CCDC88B-207ENST00000479965 Q6ZQY7 126 aa12.91□□□□□ -0.34
CCDC88B-207ENST00000479965 Q8N3U1 123 aa12.91□□□□□ -0.34
CCDC88B-207ENST00000479965 PKIGQ9Y2B9 76 aa12.91□□□□□ -0.34
CCDC88B-207ENST00000479965 CCL24O00175 119 aa12.89□□□□□ -0.35
CCDC88B-207ENST00000479965 LINC00482Q8N8I6 264 aa12.89□□□□□ -0.35
CCDC88B-207ENST00000479965 TM2D3Q9BRN9 247 aa12.89□□□□□ -0.35
CCDC88B-207ENST00000479965 PRO0628Q9UI54 55 aa12.89□□□□□ -0.35
CCDC88B-207ENST00000479965 CCDC168Q8NDH2 2452 aa12.89□□□□□ -0.35
CCDC88B-207ENST00000479965 LINC00474Q9P2X8 69 aa12.88□□□□□ -0.35
CCDC88B-207ENST00000479965 KLKP1Q107X0 134 aa12.88□□□□□ -0.35
CCDC88B-207ENST00000479965 DSCR9P59020 149 aa12.88□□□□□ -0.35
CCDC88B-207ENST00000479965 GCN1Q92616 2671 aaKnown RBP12.86□□□□□ -0.35
CCDC88B-207ENST00000479965 FP248Q71RG6 208 aaPredicted RBP12.86□□□□□ -0.35
CCDC88B-207ENST00000479965 APCP25054 2843 aa12.85□□□□□ -0.35
CCDC88B-207ENST00000479965 SMIM26A0A096LP01 95 aa12.85□□□□□ -0.35
CCDC88B-207ENST00000479965 ANGP03950 147 aaKnown RBP12.84□□□□□ -0.35
CCDC88B-207ENST00000479965 KIAA0087Q14695 138 aa12.84□□□□□ -0.35
CCDC88B-207ENST00000479965 CHCHD10Q8WYQ3 142 aaPredicted RBP12.84□□□□□ -0.35
CCDC88B-207ENST00000479965 LOC110117498A0A087WWA1 95 aa12.83□□□□□ -0.36
CCDC88B-207ENST00000479965 C6orf223Q8N319 242 aa12.83□□□□□ -0.36
CCDC88B-207ENST00000479965 ESM1Q9NQ30 184 aa12.83□□□□□ -0.36
CCDC88B-207ENST00000479965 PKD1L2Q7Z442 2459 aa12.83□□□□□ -0.36
CCDC88B-207ENST00000479965 TRBV7-6A0A0J9YX20 115 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms