RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 COL4A3Q01955 1670 aa2.19□□□□□ -2.06
UBR3-208ENST00000474426 SORL1Q92673 2214 aa2.19□□□□□ -2.06
UBR3-208ENST00000474426 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.19□□□□□ -2.06
UBR3-208ENST00000474426 A0A087WYN8 130 aa2.19□□□□□ -2.06
UBR3-208ENST00000474426 LCE2CQ5TA81 110 aa2.19□□□□□ -2.06
UBR3-208ENST00000474426 SPRR4Q96PI1 79 aa2.19□□□□□ -2.06
UBR3-208ENST00000474426 SEC16AO15027 2179 aa2.18□□□□□ -2.06
UBR3-208ENST00000474426 IGKV3OR2-268A0A0C4DH90 116 aa2.18□□□□□ -2.06
UBR3-208ENST00000474426 IGLV5-39A0A0G2JS06 123 aa2.18□□□□□ -2.06
UBR3-208ENST00000474426 IGKV2-29A2NJV5 120 aaPredicted RBP2.18□□□□□ -2.06
UBR3-208ENST00000474426 H3BPC8 53 aa2.18□□□□□ -2.06
UBR3-208ENST00000474426 ZNF861PO60384 105 aa2.18□□□□□ -2.06
UBR3-208ENST00000474426 LCE2AQ5TA79 106 aaPredicted RBP2.18□□□□□ -2.06
UBR3-208ENST00000474426 PRO3102Q9H379 93 aa2.18□□□□□ -2.06
UBR3-208ENST00000474426 SMIM1B2RUZ4 78 aa2.18□□□□□ -2.06
UBR3-208ENST00000474426 NDUFB1O75438 58 aa2.18□□□□□ -2.06
UBR3-208ENST00000474426 PRB2P02812 416 aaPredicted RBP2.18□□□□□ -2.06
UBR3-208ENST00000474426 HAMPP81172 84 aa2.18□□□□□ -2.06
UBR3-208ENST00000474426 PDE4DIPQ5VU43 2346 aa2.18□□□□□ -2.06
UBR3-208ENST00000474426 LOC400499M0QZD8 3231 aa2.18□□□□□ -2.06
UBR3-208ENST00000474426 IGKV3-15P01624 115 aa2.18□□□□□ -2.06
UBR3-208ENST00000474426 IGLV4-60A0A075B6I1 120 aa2.17□□□□□ -2.06
UBR3-208ENST00000474426 LINC00612Q8N6U2 182 aa2.17□□□□□ -2.06
UBR3-208ENST00000474426 C1orf137Q5JT78 98 aa2.17□□□□□ -2.06
UBR3-208ENST00000474426 SPTBN5Q9NRC6 3674 aaKnown RBP2.17□□□□□ -2.06
UBR3-208ENST00000474426 A0A1W2PNU3 283 aaPredicted RBP2.17□□□□□ -2.06
UBR3-208ENST00000474426 LINC01565O15544 149 aa2.17□□□□□ -2.06
UBR3-208ENST00000474426 INSP01308 110 aa2.17□□□□□ -2.06
UBR3-208ENST00000474426 IGKV4-1P06312 121 aa2.17□□□□□ -2.06
UBR3-208ENST00000474426 SLURP2P0DP57 97 aa2.17□□□□□ -2.06
UBR3-208ENST00000474426 SPATA8Q6RVD6 105 aa2.17□□□□□ -2.06
UBR3-208ENST00000474426 OTOGQ6ZRI0 2925 aa2.17□□□□□ -2.06
UBR3-208ENST00000474426 LOC110117498A0A087WWA1 95 aa2.17□□□□□ -2.06
UBR3-208ENST00000474426 CCL18P55774 89 aa2.17□□□□□ -2.06
UBR3-208ENST00000474426 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.16□□□□□ -2.06
UBR3-208ENST00000474426 WFDC10AQ9H1F0 79 aa2.16□□□□□ -2.06
UBR3-208ENST00000474426 F5P12259 2224 aa2.16□□□□□ -2.06
UBR3-208ENST00000474426 PLCE1Q9P212 2302 aa2.16□□□□□ -2.06
UBR3-208ENST00000474426 FREM2Q5SZK8 3169 aa2.16□□□□□ -2.06
UBR3-208ENST00000474426 DCHS1Q96JQ0 3298 aa2.16□□□□□ -2.06
UBR3-208ENST00000474426 CDH23Q9H251 3354 aa2.16□□□□□ -2.06
UBR3-208ENST00000474426 H0Y9P7 68 aa2.16□□□□□ -2.06
UBR3-208ENST00000474426 M0R2N4 97 aa2.16□□□□□ -2.06
UBR3-208ENST00000474426 NDUFA4O00483 81 aa2.16□□□□□ -2.06
UBR3-208ENST00000474426 GIG44P09565 113 aaPredicted RBP2.16□□□□□ -2.06
UBR3-208ENST00000474426 RNASE3P12724 160 aaKnown RBP2.16□□□□□ -2.06
UBR3-208ENST00000474426 C10orf113Q5VZT2 155 aa2.16□□□□□ -2.06
UBR3-208ENST00000474426 SUMO4Q6EEV6 95 aa2.16□□□□□ -2.06
UBR3-208ENST00000474426 SMIM2Q9BVW6 85 aa2.16□□□□□ -2.06
UBR3-208ENST00000474426 AHCTF1Q8WYP5 2266 aa2.16□□□□□ -2.06
UBR3-208ENST00000474426 IGLV1-40P01703 118 aa2.16□□□□□ -2.06
UBR3-208ENST00000474426 Q5W150 140 aa2.16□□□□□ -2.06
UBR3-208ENST00000474426 Q8N1X5 172 aa2.16□□□□□ -2.06
UBR3-208ENST00000474426 PRUNE2Q8WUY3 3088 aa2.15□□□□□ -2.06
UBR3-208ENST00000474426 SPINK9Q5DT21 86 aa2.15□□□□□ -2.06
UBR3-208ENST00000474426 KLK12Q9UKR0 248 aa2.15□□□□□ -2.06
UBR3-208ENST00000474426 CELSR2Q9HCU4 2923 aa2.15□□□□□ -2.07
UBR3-208ENST00000474426 NUPR2A6NF83 97 aa2.15□□□□□ -2.07
UBR3-208ENST00000474426 H0YGX0 51 aa2.15□□□□□ -2.07
UBR3-208ENST00000474426 H3BQ85 93 aa2.15□□□□□ -2.07
UBR3-208ENST00000474426 COA5Q86WW8 74 aa2.15□□□□□ -2.07
UBR3-208ENST00000474426 LINC00308Q8TCZ7 52 aa2.15□□□□□ -2.07
UBR3-208ENST00000474426 LINC00472Q9H8W2 130 aa2.15□□□□□ -2.07
UBR3-208ENST00000474426 COL4A4P53420 1690 aaPredicted RBP2.15□□□□□ -2.07
UBR3-208ENST00000474426 IGLV11-55A0A075B6I3 123 aa2.15□□□□□ -2.07
UBR3-208ENST00000474426 SLPIP03973 132 aa2.15□□□□□ -2.07
UBR3-208ENST00000474426 MRPS21P82921 87 aaKnown RBP2.15□□□□□ -2.07
UBR3-208ENST00000474426 DSPP15924 2871 aaKnown RBP2.15□□□□□ -2.07
UBR3-208ENST00000474426 ATMQ13315 3056 aa2.14□□□□□ -2.07
UBR3-208ENST00000474426 IGLV7-46A0A075B6I9 117 aa2.14□□□□□ -2.07
UBR3-208ENST00000474426 CCL3L1P16619 93 aa2.14□□□□□ -2.07
UBR3-208ENST00000474426 PTPRQQ9UMZ3 2332 aa2.14□□□□□ -2.07
UBR3-208ENST00000474426 CFAP47Q6ZTR5 3102 aa2.14□□□□□ -2.07
UBR3-208ENST00000474426 A0A087WTM6 91 aa2.14□□□□□ -2.07
UBR3-208ENST00000474426 DEFB106AQ8N104 65 aa2.14□□□□□ -2.07
UBR3-208ENST00000474426 GAFA1Q96PS6 74 aa2.14□□□□□ -2.07
UBR3-208ENST00000474426 SPENQ96T58 3664 aaKnown RBP2.14□□□□□ -2.07
UBR3-208ENST00000474426 IGHV3-64DA0A0J9YX35 117 aa2.14□□□□□ -2.07
UBR3-208ENST00000474426 IGLV3-1P01715 115 aa2.14□□□□□ -2.07
UBR3-208ENST00000474426 ERHP84090 104 aaKnown RBP2.14□□□□□ -2.07
UBR3-208ENST00000474426 PRB3Q04118 309 aaPredicted RBP2.14□□□□□ -2.07
UBR3-208ENST00000474426 LAMA1P25391 3075 aa2.14□□□□□ -2.07
UBR3-208ENST00000474426 FRYLO94915 3013 aa2.14□□□□□ -2.07
UBR3-208ENST00000474426 TRBV6-4A0A1B0GX49 114 aa2.13□□□□□ -2.07
UBR3-208ENST00000474426 PIGYQ3MUY2 71 aa2.13□□□□□ -2.07
UBR3-208ENST00000474426 DMAC1Q96GE9 116 aa2.13□□□□□ -2.07
UBR3-208ENST00000474426 Q8N9L7 120 aa2.13□□□□□ -2.07
UBR3-208ENST00000474426 DEFB126Q9BYW3 111 aa2.13□□□□□ -2.07
UBR3-208ENST00000474426 DNAH12Q6ZR08 3092 aa2.13□□□□□ -2.07
UBR3-208ENST00000474426 WDFY4Q6ZS81 3184 aa2.13□□□□□ -2.07
UBR3-208ENST00000474426 DMDP11532 3685 aa2.13□□□□□ -2.07
UBR3-208ENST00000474426 IGHV3-64A0A075B6Q5 118 aa2.13□□□□□ -2.07
UBR3-208ENST00000474426 TRGV4A0A0C4DH28 118 aa2.13□□□□□ -2.07
UBR3-208ENST00000474426 COL4A2P08572 1712 aa2.13□□□□□ -2.07
UBR3-208ENST00000474426 DEFB112Q30KQ8 113 aa2.13□□□□□ -2.07
UBR3-208ENST00000474426 IGFL4Q6B9Z1 124 aa2.13□□□□□ -2.07
UBR3-208ENST00000474426 ST20-AS1Q8NBB2 130 aa2.13□□□□□ -2.07
UBR3-208ENST00000474426 KCNQ1DNQ9H478 68 aa2.12□□□□□ -2.07
UBR3-208ENST00000474426 LAMA2P24043 3122 aaKnown RBP2.12□□□□□ -2.07
UBR3-208ENST00000474426 ASXL3Q9C0F0 2248 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms