RNA–Protein interactions for RNA: ENST00000468253.1

NPHP4-206, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 781 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-206ENST00000468253 SMIM1B2RUZ4 78 aa12.66□□□□□ -0.38
NPHP4-206ENST00000468253 CKS1BP61024 79 aa12.66□□□□□ -0.38
NPHP4-206ENST00000468253 STPG4Q8N801 248 aa12.66□□□□□ -0.38
NPHP4-206ENST00000468253 IFI27L1Q96BM0 104 aa12.66□□□□□ -0.38
NPHP4-206ENST00000468253 C6orf48Q9UBA6 75 aa12.66□□□□□ -0.38
NPHP4-206ENST00000468253 SERF1AO75920 110 aa12.65□□□□□ -0.38
NPHP4-206ENST00000468253 GAGE2BQ13066 116 aa12.65□□□□□ -0.38
NPHP4-206ENST00000468253 TOMM7Q9P0U1 55 aa12.65□□□□□ -0.38
NPHP4-206ENST00000468253 CXCL5P42830 114 aa12.64□□□□□ -0.39
NPHP4-206ENST00000468253 LINC00310P59036 64 aa12.64□□□□□ -0.39
NPHP4-206ENST00000468253 C2orf82Q6UX34 121 aa12.64□□□□□ -0.39
NPHP4-206ENST00000468253 FAM19A2Q8N3H0 131 aa12.64□□□□□ -0.39
NPHP4-206ENST00000468253 INAFM2P0DMQ5 153 aa12.63□□□□□ -0.39
NPHP4-206ENST00000468253 S100A1P23297 94 aa12.63□□□□□ -0.39
NPHP4-206ENST00000468253 F8VRH5 84 aa12.61□□□□□ -0.39
NPHP4-206ENST00000468253 COX7B2Q8TF08 81 aa12.61□□□□□ -0.39
NPHP4-206ENST00000468253 CHTOPQ9Y3Y2 248 aaKnown RBP12.61□□□□□ -0.39
NPHP4-206ENST00000468253 IGLV5-39A0A0G2JS06 123 aa12.6□□□□□ -0.39
NPHP4-206ENST00000468253 NDUFC2-KCTD14E9PQ53 114 aa12.6□□□□□ -0.39
NPHP4-206ENST00000468253 NUPR1O60356 82 aa12.6□□□□□ -0.39
NPHP4-206ENST00000468253 LEPROTL1O95214 131 aa12.6□□□□□ -0.39
NPHP4-206ENST00000468253 SPINK8P0C7L1 97 aa12.6□□□□□ -0.39
NPHP4-206ENST00000468253 ZNF22P17026 224 aaPredicted RBP12.6□□□□□ -0.39
NPHP4-206ENST00000468253 KRTAP10-4P60372 401 aaPredicted RBP12.6□□□□□ -0.39
NPHP4-206ENST00000468253 RPL18AQ02543 176 aaKnown RBP12.6□□□□□ -0.39
NPHP4-206ENST00000468253 Q6ZRP5 223 aa12.6□□□□□ -0.39
NPHP4-206ENST00000468253 HIST1H2BKO60814 126 aa12.59□□□□□ -0.39
NPHP4-206ENST00000468253 HIST1H2BJP06899 126 aa12.59□□□□□ -0.39
NPHP4-206ENST00000468253 HIST1H2BOP23527 126 aa12.59□□□□□ -0.39
NPHP4-206ENST00000468253 HIST1H2BBP33778 126 aa12.59□□□□□ -0.39
NPHP4-206ENST00000468253 HIST1H2BDP58876 126 aa12.59□□□□□ -0.39
NPHP4-206ENST00000468253 HIST1H2BCP62807 126 aa12.59□□□□□ -0.39
NPHP4-206ENST00000468253 HIST2H2BEQ16778 126 aa12.59□□□□□ -0.39
NPHP4-206ENST00000468253 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.59□□□□□ -0.39
NPHP4-206ENST00000468253 C7orf33Q8WU49 177 aa12.59□□□□□ -0.39
NPHP4-206ENST00000468253 HIST1H2BHQ93079 126 aa12.59□□□□□ -0.39
NPHP4-206ENST00000468253 HIST1H2BNQ99877 126 aa12.59□□□□□ -0.39
NPHP4-206ENST00000468253 HIST1H2BMQ99879 126 aa12.59□□□□□ -0.39
NPHP4-206ENST00000468253 HSPB8Q9UJY1 196 aa12.59□□□□□ -0.39
NPHP4-206ENST00000468253 C11orf86A6NJI1 115 aa12.58□□□□□ -0.4
NPHP4-206ENST00000468253 RPL37AP61513 92 aaKnown RBP12.58□□□□□ -0.4
NPHP4-206ENST00000468253 A0A1W2PNN7 141 aa12.57□□□□□ -0.4
NPHP4-206ENST00000468253 C9orf116Q5BN46 136 aaPredicted RBP12.56□□□□□ -0.4
NPHP4-206ENST00000468253 TMEM170BQ5T4T1 132 aa12.55□□□□□ -0.4
NPHP4-206ENST00000468253 GAGE2EQ4V326 116 aa12.54□□□□□ -0.4
NPHP4-206ENST00000468253 GAGE2DQ9UEU5 116 aa12.54□□□□□ -0.4
NPHP4-206ENST00000468253 ODF1Q14990 250 aa12.52□□□□□ -0.41
NPHP4-206ENST00000468253 SFTA2Q6UW10 78 aa12.52□□□□□ -0.41
NPHP4-206ENST00000468253 FABP4P15090 132 aa12.51□□□□□ -0.41
NPHP4-206ENST00000468253 COA6Q5JTJ3 125 aaKnown RBP12.51□□□□□ -0.41
NPHP4-206ENST00000468253 FLG2Q5D862 2391 aaPredicted RBP12.51□□□□□ -0.41
NPHP4-206ENST00000468253 TMEM223A0PJW6 202 aa12.5□□□□□ -0.41
NPHP4-206ENST00000468253 ATP6V1G1O75348 118 aa12.5□□□□□ -0.41
NPHP4-206ENST00000468253 MAP1LC3CQ9BXW4 147 aa12.49□□□□□ -0.41
NPHP4-206ENST00000468253 C9orf129Q5T035 196 aaKnown RBP12.48□□□□□ -0.41
NPHP4-206ENST00000468253 PLNP26678 52 aa12.47□□□□□ -0.41
NPHP4-206ENST00000468253 COX17Q14061 63 aa12.46□□□□□ -0.41
NPHP4-206ENST00000468253 FAM168BA1KXE4 195 aa12.45□□□□□ -0.42
NPHP4-206ENST00000468253 H0Y8G0 127 aa12.45□□□□□ -0.42
NPHP4-206ENST00000468253 KRTAP7-1Q8IUC3 87 aa12.45□□□□□ -0.42
NPHP4-206ENST00000468253 MYCBP2O75592 4640 aa12.45□□□□□ -0.42
NPHP4-206ENST00000468253 DPM2O94777 84 aa12.44□□□□□ -0.42
NPHP4-206ENST00000468253 PRR3P79522 188 aaKnown RBP12.44□□□□□ -0.42
NPHP4-206ENST00000468253 ZNF625Q96I27 306 aaPredicted RBP12.44□□□□□ -0.42
NPHP4-206ENST00000468253 PHF5AQ7RTV0 110 aaKnown RBP12.43□□□□□ -0.42
NPHP4-206ENST00000468253 PKHD1L1Q86WI1 4243 aa12.42□□□□□ -0.42
NPHP4-206ENST00000468253 FAM19A5Q7Z5A7 132 aaPredicted RBP12.42□□□□□ -0.42
NPHP4-206ENST00000468253 XAGE1AQ9HD64 81 aa12.42□□□□□ -0.42
NPHP4-206ENST00000468253 PLA2G2DQ9UNK4 145 aa12.42□□□□□ -0.42
NPHP4-206ENST00000468253 SYS1-DBNDD2H3BUS1 97 aa12.41□□□□□ -0.42
NPHP4-206ENST00000468253 IGKCP01834 107 aa12.41□□□□□ -0.42
NPHP4-206ENST00000468253 ERG28Q9UKR5 140 aa12.41□□□□□ -0.42
NPHP4-206ENST00000468253 HNRNPA3P51991 378 aaKnown RBP12.4□□□□□ -0.42
NPHP4-206ENST00000468253 KRTAP29-1A8MX34 341 aaPredicted RBP12.39□□□□□ -0.43
NPHP4-206ENST00000468253 LBHQ53QV2 105 aaPredicted RBP12.39□□□□□ -0.43
NPHP4-206ENST00000468253 PET117Q6UWS5 81 aa12.39□□□□□ -0.43
NPHP4-206ENST00000468253 TP73-AS1Q9UF72 201 aa12.39□□□□□ -0.43
NPHP4-206ENST00000468253 LINC00587B1AMM8 73 aa12.38□□□□□ -0.43
NPHP4-206ENST00000468253 M0QXV9 152 aa12.38□□□□□ -0.43
NPHP4-206ENST00000468253 OXTP01178 125 aa12.38□□□□□ -0.43
NPHP4-206ENST00000468253 PFN2P35080 140 aa12.38□□□□□ -0.43
NPHP4-206ENST00000468253 HERV-K104P63124 156 aa12.38□□□□□ -0.43
NPHP4-206ENST00000468253 SERTAD4-AS1Q5TG53 156 aa12.38□□□□□ -0.43
NPHP4-206ENST00000468253 PLEKHB2Q96CS7 222 aa12.38□□□□□ -0.43
NPHP4-206ENST00000468253 PSORS1C2Q9UIG4 136 aa12.38□□□□□ -0.43
NPHP4-206ENST00000468253 C22orf24Q9Y442 160 aa12.38□□□□□ -0.43
NPHP4-206ENST00000468253 LEPROTO15243 131 aa12.37□□□□□ -0.43
NPHP4-206ENST00000468253 HERVK_113P61574 105 aa12.37□□□□□ -0.43
NPHP4-206ENST00000468253 SRSF9Q13242 221 aaKnown RBP eCLIP12.37□□□□□ -0.43
NPHP4-206ENST00000468253 PMCHL2Q9BQD1 86 aa12.37□□□□□ -0.43
NPHP4-206ENST00000468253 LINC01545Q5VT33 79 aa12.36□□□□□ -0.43
NPHP4-206ENST00000468253 DMBT1Q9UGM3 2413 aaPredicted RBP12.36□□□□□ -0.43
NPHP4-206ENST00000468253 IGLV5-37A0A075B6J1 123 aa12.35□□□□□ -0.43
NPHP4-206ENST00000468253 MYMXA0A1B0GTQ4 84 aa12.35□□□□□ -0.43
NPHP4-206ENST00000468253 SPINK6Q6UWN8 80 aa12.35□□□□□ -0.43
NPHP4-206ENST00000468253 NDUFA12Q9UI09 145 aa12.35□□□□□ -0.43
NPHP4-206ENST00000468253 SND1-IT1Q9HBX3 110 aa12.34□□□□□ -0.43
NPHP4-206ENST00000468253 J3QQQ9 107 aa12.32□□□□□ -0.44
NPHP4-206ENST00000468253 C3orf79P0CE67 100 aa12.32□□□□□ -0.44
NPHP4-206ENST00000468253 NMUP48645 174 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms