RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 F8WDY8 70 aa7.63□□□□□ -1.19
SHROOM3-202ENST00000466541 H3BRM9 83 aa7.63□□□□□ -1.19
SHROOM3-202ENST00000466541 PLA2G1BP04054 148 aaKnown RBP7.63□□□□□ -1.19
SHROOM3-202ENST00000466541 IGLC3P0DOY3 106 aa7.63□□□□□ -1.19
SHROOM3-202ENST00000466541 FABP4P15090 132 aa7.63□□□□□ -1.19
SHROOM3-202ENST00000466541 PTTG1IPP53801 180 aa7.63□□□□□ -1.19
SHROOM3-202ENST00000466541 LINC00310P59036 64 aa7.63□□□□□ -1.19
SHROOM3-202ENST00000466541 CIRBPQ14011 172 aaKnown RBP7.63□□□□□ -1.19
SHROOM3-202ENST00000466541 GAGE2EQ4V326 116 aa7.63□□□□□ -1.19
SHROOM3-202ENST00000466541 LINC00474Q9P2X8 69 aa7.63□□□□□ -1.19
SHROOM3-202ENST00000466541 GAGE2DQ9UEU5 116 aa7.63□□□□□ -1.19
SHROOM3-202ENST00000466541 CHTOPQ9Y3Y2 248 aaKnown RBP7.63□□□□□ -1.19
SHROOM3-202ENST00000466541 ATP6V1G1O75348 118 aa7.62□□□□□ -1.19
SHROOM3-202ENST00000466541 INAFM2P0DMQ5 153 aa7.62□□□□□ -1.19
SHROOM3-202ENST00000466541 RNF151Q2KHN1 245 aa7.62□□□□□ -1.19
SHROOM3-202ENST00000466541 TMEM170BQ5T4T1 132 aa7.62□□□□□ -1.19
SHROOM3-202ENST00000466541 Q8IZM0 81 aa7.62□□□□□ -1.19
SHROOM3-202ENST00000466541 COX7B2Q8TF08 81 aa7.62□□□□□ -1.19
SHROOM3-202ENST00000466541 IGLV5-45A0A087WSX0 123 aa7.61□□□□□ -1.19
SHROOM3-202ENST00000466541 C11orf86A6NJI1 115 aa7.61□□□□□ -1.19
SHROOM3-202ENST00000466541 LEPROTL1O95214 131 aa7.61□□□□□ -1.19
SHROOM3-202ENST00000466541 ZNF22P17026 224 aaPredicted RBP7.61□□□□□ -1.19
SHROOM3-202ENST00000466541 RPL37AP61513 92 aaKnown RBP7.61□□□□□ -1.19
SHROOM3-202ENST00000466541 PLAC8Q9NZF1 115 aa7.61□□□□□ -1.19
SHROOM3-202ENST00000466541 VPS13BQ7Z7G8 4022 aa7.61□□□□□ -1.19
SHROOM3-202ENST00000466541 TRBV30A0A0K0K1B3 111 aa7.6□□□□□ -1.19
SHROOM3-202ENST00000466541 HIST1H2BKO60814 126 aa7.6□□□□□ -1.19
SHROOM3-202ENST00000466541 HIST1H2BJP06899 126 aa7.6□□□□□ -1.19
SHROOM3-202ENST00000466541 S100A1P23297 94 aa7.6□□□□□ -1.19
SHROOM3-202ENST00000466541 HIST1H2BOP23527 126 aa7.6□□□□□ -1.19
SHROOM3-202ENST00000466541 HIST1H2BBP33778 126 aa7.6□□□□□ -1.19
SHROOM3-202ENST00000466541 HIST1H2BDP58876 126 aa7.6□□□□□ -1.19
SHROOM3-202ENST00000466541 HIST1H2BCP62807 126 aa7.6□□□□□ -1.19
SHROOM3-202ENST00000466541 HIST2H2BEQ16778 126 aa7.6□□□□□ -1.19
SHROOM3-202ENST00000466541 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.6□□□□□ -1.19
SHROOM3-202ENST00000466541 Q6ZRP5 223 aa7.6□□□□□ -1.19
SHROOM3-202ENST00000466541 HIST1H2BHQ93079 126 aa7.6□□□□□ -1.19
SHROOM3-202ENST00000466541 HIST1H2BNQ99877 126 aa7.6□□□□□ -1.19
SHROOM3-202ENST00000466541 HIST1H2BMQ99879 126 aa7.6□□□□□ -1.19
SHROOM3-202ENST00000466541 A0A1W2PNN7 141 aa7.59□□□□□ -1.19
SHROOM3-202ENST00000466541 C7orf33Q8WU49 177 aa7.59□□□□□ -1.19
SHROOM3-202ENST00000466541 TRAV12-1A0A0B4J245 112 aa7.58□□□□□ -1.2
SHROOM3-202ENST00000466541 F8VRH5 84 aa7.58□□□□□ -1.2
SHROOM3-202ENST00000466541 HSPB8Q9UJY1 196 aa7.58□□□□□ -1.2
SHROOM3-202ENST00000466541 FAM168BA1KXE4 195 aa7.57□□□□□ -1.2
SHROOM3-202ENST00000466541 FAM19A5Q7Z5A7 132 aaPredicted RBP7.57□□□□□ -1.2
SHROOM3-202ENST00000466541 NDUFC2-KCTD14E9PQ53 114 aa7.56□□□□□ -1.2
SHROOM3-202ENST00000466541 TLX1NBP0CAT3 122 aa7.56□□□□□ -1.2
SHROOM3-202ENST00000466541 CXCL5P42830 114 aa7.56□□□□□ -1.2
SHROOM3-202ENST00000466541 PMCHL2Q9BQD1 86 aa7.56□□□□□ -1.2
SHROOM3-202ENST00000466541 FLG2Q5D862 2391 aaPredicted RBP7.55□□□□□ -1.2
SHROOM3-202ENST00000466541 ZNF625Q96I27 306 aaPredicted RBP7.55□□□□□ -1.2
SHROOM3-202ENST00000466541 XAGE1AQ9HD64 81 aa7.55□□□□□ -1.2
SHROOM3-202ENST00000466541 IGLV5-39A0A0G2JS06 123 aa7.54□□□□□ -1.2
SHROOM3-202ENST00000466541 PFN2P35080 140 aa7.54□□□□□ -1.2
SHROOM3-202ENST00000466541 ODF1Q14990 250 aa7.54□□□□□ -1.2
SHROOM3-202ENST00000466541 PHF5AQ7RTV0 110 aaKnown RBP7.54□□□□□ -1.2
SHROOM3-202ENST00000466541 MAP1LC3CQ9BXW4 147 aa7.54□□□□□ -1.2
SHROOM3-202ENST00000466541 TMEM223A0PJW6 202 aa7.53□□□□□ -1.2
SHROOM3-202ENST00000466541 KRTAP10-4P60372 401 aaPredicted RBP7.53□□□□□ -1.2
SHROOM3-202ENST00000466541 C9orf129Q5T035 196 aaKnown RBP7.53□□□□□ -1.2
SHROOM3-202ENST00000466541 DPM2O94777 84 aa7.51□□□□□ -1.21
SHROOM3-202ENST00000466541 PLNP26678 52 aa7.51□□□□□ -1.21
SHROOM3-202ENST00000466541 HNRNPA3P51991 378 aaKnown RBP7.51□□□□□ -1.21
SHROOM3-202ENST00000466541 IGKCP01834 107 aa7.5□□□□□ -1.21
SHROOM3-202ENST00000466541 PRR3P79522 188 aaKnown RBP7.5□□□□□ -1.21
SHROOM3-202ENST00000466541 A0A0U1RRA0 63 aa7.49□□□□□ -1.21
SHROOM3-202ENST00000466541 M0QXV9 152 aa7.49□□□□□ -1.21
SHROOM3-202ENST00000466541 UBE2BP63146 152 aa7.49□□□□□ -1.21
SHROOM3-202ENST00000466541 SERTAD4-AS1Q5TG53 156 aa7.49□□□□□ -1.21
SHROOM3-202ENST00000466541 ERG28Q9UKR5 140 aa7.49□□□□□ -1.21
SHROOM3-202ENST00000466541 SYS1-DBNDD2H3BUS1 97 aa7.48□□□□□ -1.21
SHROOM3-202ENST00000466541 KRTDAPP60985 99 aa7.48□□□□□ -1.21
SHROOM3-202ENST00000466541 KRTAP7-1Q8IUC3 87 aa7.48□□□□□ -1.21
SHROOM3-202ENST00000466541 LINC00158P58513 81 aa7.47□□□□□ -1.21
SHROOM3-202ENST00000466541 HERVK_113P61574 105 aa7.47□□□□□ -1.21
SHROOM3-202ENST00000466541 C1orf137Q5JT78 98 aa7.47□□□□□ -1.21
SHROOM3-202ENST00000466541 PSORS1C2Q9UIG4 136 aa7.47□□□□□ -1.21
SHROOM3-202ENST00000466541 C22orf24Q9Y442 160 aa7.47□□□□□ -1.21
SHROOM3-202ENST00000466541 MYCBP2O75592 4640 aa7.46□□□□□ -1.21
SHROOM3-202ENST00000466541 LEPROTO15243 131 aa7.46□□□□□ -1.22
SHROOM3-202ENST00000466541 C3orf79P0CE67 100 aa7.46□□□□□ -1.22
SHROOM3-202ENST00000466541 MEIG1Q5JSS6 88 aa7.46□□□□□ -1.22
SHROOM3-202ENST00000466541 COA6Q5JTJ3 125 aaKnown RBP7.46□□□□□ -1.22
SHROOM3-202ENST00000466541 NDUFA12Q9UI09 145 aa7.46□□□□□ -1.22
SHROOM3-202ENST00000466541 GAGE10A6NGK3 116 aa7.45□□□□□ -1.22
SHROOM3-202ENST00000466541 TSPEAR-AS2P59090 65 aa7.45□□□□□ -1.22
SHROOM3-202ENST00000466541 SFTA2Q6UW10 78 aa7.45□□□□□ -1.22
SHROOM3-202ENST00000466541 KRTAP11-1Q8IUC1 163 aa7.45□□□□□ -1.22
SHROOM3-202ENST00000466541 PLEKHB2Q96CS7 222 aa7.45□□□□□ -1.22
SHROOM3-202ENST00000466541 SND1-IT1Q9HBX3 110 aa7.45□□□□□ -1.22
SHROOM3-202ENST00000466541 MYMXA0A1B0GTQ4 84 aa7.44□□□□□ -1.22
SHROOM3-202ENST00000466541 J3QL48 77 aa7.44□□□□□ -1.22
SHROOM3-202ENST00000466541 J3QQQ9 107 aa7.44□□□□□ -1.22
SHROOM3-202ENST00000466541 SMIM13P0DJ93 91 aa7.44□□□□□ -1.22
SHROOM3-202ENST00000466541 LGALS3P17931 250 aaKnown RBP7.44□□□□□ -1.22
SHROOM3-202ENST00000466541 COX17Q14061 63 aa7.44□□□□□ -1.22
SHROOM3-202ENST00000466541 PET117Q6UWS5 81 aa7.44□□□□□ -1.22
SHROOM3-202ENST00000466541 NKAPP1Q8N9T2 125 aa7.44□□□□□ -1.22
SHROOM3-202ENST00000466541 RPL37AP8A6NKH3 93 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms