RNA–Protein interactions for RNA: ENST00000466411.1

CLDN4-204, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 593 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-204ENST00000466411 HIST1H2BDP58876 126 aa4.54□□□□□ -1.68
CLDN4-204ENST00000466411 HIST1H2BCP62807 126 aa4.54□□□□□ -1.68
CLDN4-204ENST00000466411 HIST2H2BEQ16778 126 aa4.54□□□□□ -1.68
CLDN4-204ENST00000466411 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.54□□□□□ -1.68
CLDN4-204ENST00000466411 LCE3BQ5TA77 95 aa4.54□□□□□ -1.68
CLDN4-204ENST00000466411 KRTAP26-1Q6PEX3 210 aa4.54□□□□□ -1.68
CLDN4-204ENST00000466411 HIST1H2BHQ93079 126 aa4.54□□□□□ -1.68
CLDN4-204ENST00000466411 HIST1H2BNQ99877 126 aa4.54□□□□□ -1.68
CLDN4-204ENST00000466411 HIST1H2BMQ99879 126 aa4.54□□□□□ -1.68
CLDN4-204ENST00000466411 CST9LQ9H4G1 147 aa4.54□□□□□ -1.68
CLDN4-204ENST00000466411 LINC00474Q9P2X8 69 aa4.54□□□□□ -1.68
CLDN4-204ENST00000466411 KRTAP9-7A8MTY7 169 aa4.53□□□□□ -1.68
CLDN4-204ENST00000466411 PRSS1P07477 247 aa4.53□□□□□ -1.68
CLDN4-204ENST00000466411 PRSS2P07478 247 aa4.53□□□□□ -1.68
CLDN4-204ENST00000466411 PLNP26678 52 aa4.53□□□□□ -1.68
CLDN4-204ENST00000466411 RNASE13Q5GAN3 156 aaKnown RBP4.53□□□□□ -1.68
CLDN4-204ENST00000466411 COA6Q5JTJ3 125 aaKnown RBP4.53□□□□□ -1.68
CLDN4-204ENST00000466411 LINC00242Q5T6M2 205 aa4.53□□□□□ -1.68
CLDN4-204ENST00000466411 LINC00173Q6ZV60 143 aa4.53□□□□□ -1.68
CLDN4-204ENST00000466411 IFI27L1Q96BM0 104 aa4.53□□□□□ -1.68
CLDN4-204ENST00000466411 MAP1LC3CQ9BXW4 147 aa4.53□□□□□ -1.68
CLDN4-204ENST00000466411 IGHV3-64A0A075B6Q5 118 aa4.52□□□□□ -1.69
CLDN4-204ENST00000466411 IGLV5-45A0A087WSX0 123 aa4.52□□□□□ -1.69
CLDN4-204ENST00000466411 A0A096LNJ9 63 aa4.52□□□□□ -1.69
CLDN4-204ENST00000466411 S100A6P06703 90 aa4.52□□□□□ -1.69
CLDN4-204ENST00000466411 IGLC3P0DOY3 106 aa4.52□□□□□ -1.69
CLDN4-204ENST00000466411 NDUFA6P56556 154 aa4.52□□□□□ -1.69
CLDN4-204ENST00000466411 Q8IZM0 81 aa4.52□□□□□ -1.69
CLDN4-204ENST00000466411 LINC00469Q8N7U9 141 aa4.52□□□□□ -1.69
CLDN4-204ENST00000466411 C15orf56Q8N910 161 aa4.52□□□□□ -1.69
CLDN4-204ENST00000466411 FAM104AQ969W3 186 aa4.52□□□□□ -1.69
CLDN4-204ENST00000466411 URB1-AS1Q96HZ7 61 aa4.52□□□□□ -1.69
CLDN4-204ENST00000466411 OPRPNQ99935 248 aaPredicted RBP4.52□□□□□ -1.69
CLDN4-204ENST00000466411 IGLV4-69A0A075B6H9 119 aa4.51□□□□□ -1.69
CLDN4-204ENST00000466411 F8VRH5 84 aa4.51□□□□□ -1.69
CLDN4-204ENST00000466411 LECT2O14960 151 aa4.51□□□□□ -1.69
CLDN4-204ENST00000466411 NDUFA1O15239 70 aa4.51□□□□□ -1.69
CLDN4-204ENST00000466411 KRTAP10-1P60331 282 aa4.51□□□□□ -1.69
CLDN4-204ENST00000466411 CKS1BP61024 79 aa4.51□□□□□ -1.69
CLDN4-204ENST00000466411 SPAG11BQ08648 103 aa4.51□□□□□ -1.69
CLDN4-204ENST00000466411 C9orf163Q8N9P6 203 aa4.51□□□□□ -1.69
CLDN4-204ENST00000466411 ORAOV1Q8WV07 137 aa4.51□□□□□ -1.69
CLDN4-204ENST00000466411 CARD19Q96LW7 228 aa4.51□□□□□ -1.69
CLDN4-204ENST00000466411 CHAC1Q9BUX1 264 aa4.51□□□□□ -1.69
CLDN4-204ENST00000466411 CHTOPQ9Y3Y2 248 aaKnown RBP4.51□□□□□ -1.69
CLDN4-204ENST00000466411 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.5□□□□□ -1.69
CLDN4-204ENST00000466411 TRBV30A0A0K0K1B3 111 aa4.5□□□□□ -1.69
CLDN4-204ENST00000466411 C20orf202A1L168 122 aa4.5□□□□□ -1.69
CLDN4-204ENST00000466411 OXTP01178 125 aa4.5□□□□□ -1.69
CLDN4-204ENST00000466411 FUSP35637 526 aaKnown RBP eCLIP4.5□□□□□ -1.69
CLDN4-204ENST00000466411 HERVK_113P61574 105 aa4.5□□□□□ -1.69
CLDN4-204ENST00000466411 SYCNQ0VAF6 134 aa4.5□□□□□ -1.69
CLDN4-204ENST00000466411 PMCHL1Q16048 86 aa4.5□□□□□ -1.69
CLDN4-204ENST00000466411 C6orf226Q5I0X4 101 aa4.5□□□□□ -1.69
CLDN4-204ENST00000466411 C5orf38Q86SI9 138 aa4.5□□□□□ -1.69
CLDN4-204ENST00000466411 CAMK2N2Q96S95 79 aa4.5□□□□□ -1.69
CLDN4-204ENST00000466411 MRPL35Q9NZE8 188 aaKnown RBP4.5□□□□□ -1.69
CLDN4-204ENST00000466411 A0A0J9YXV3 536 aa4.49□□□□□ -1.69
CLDN4-204ENST00000466411 C11orf86A6NJI1 115 aa4.49□□□□□ -1.69
CLDN4-204ENST00000466411 S100A2P29034 98 aa4.49□□□□□ -1.69
CLDN4-204ENST00000466411 PET117Q6UWS5 81 aa4.49□□□□□ -1.69
CLDN4-204ENST00000466411 FAM19A2Q8N3H0 131 aa4.49□□□□□ -1.69
CLDN4-204ENST00000466411 CDKN2A-AS1Q9UH64 79 aa4.49□□□□□ -1.69
CLDN4-204ENST00000466411 DNAH8Q96JB1 4490 aa4.49□□□□□ -1.69
CLDN4-204ENST00000466411 LOC107984640A0A0U1RRK4 108 aa4.48□□□□□ -1.69
CLDN4-204ENST00000466411 LINC00587B1AMM8 73 aa4.48□□□□□ -1.69
CLDN4-204ENST00000466411 SMIM1B2RUZ4 78 aa4.48□□□□□ -1.69
CLDN4-204ENST00000466411 DPM2O94777 84 aa4.48□□□□□ -1.69
CLDN4-204ENST00000466411 WFDC2Q14508 124 aa4.48□□□□□ -1.69
CLDN4-204ENST00000466411 HIGD2BQ4VC39 106 aa4.48□□□□□ -1.69
CLDN4-204ENST00000466411 TMEM170BQ5T4T1 132 aa4.48□□□□□ -1.69
CLDN4-204ENST00000466411 IGLV5-39A0A0G2JS06 123 aa4.47□□□□□ -1.69
CLDN4-204ENST00000466411 TLX1NBP0CAT3 122 aa4.47□□□□□ -1.69
CLDN4-204ENST00000466411 FABP4P15090 132 aa4.47□□□□□ -1.69
CLDN4-204ENST00000466411 KRTAP10-4P60372 401 aaPredicted RBP4.47□□□□□ -1.69
CLDN4-204ENST00000466411 HAMPP81172 84 aa4.47□□□□□ -1.69
CLDN4-204ENST00000466411 COX6A2Q02221 97 aa4.47□□□□□ -1.69
CLDN4-204ENST00000466411 COX17Q14061 63 aa4.47□□□□□ -1.69
CLDN4-204ENST00000466411 Q6ZSA8 131 aa4.47□□□□□ -1.69
CLDN4-204ENST00000466411 COX7B2Q8TF08 81 aa4.47□□□□□ -1.69
CLDN4-204ENST00000466411 SYS1-DBNDD2H3BUS1 97 aa4.46□□□□□ -1.7
CLDN4-204ENST00000466411 IGKCP01834 107 aa4.46□□□□□ -1.7
CLDN4-204ENST00000466411 ZNF22P17026 224 aaPredicted RBP4.46□□□□□ -1.7
CLDN4-204ENST00000466411 NMUP48645 174 aa4.46□□□□□ -1.7
CLDN4-204ENST00000466411 SNRPEP62304 92 aaKnown RBP4.46□□□□□ -1.7
CLDN4-204ENST00000466411 HERV-K104P63124 156 aa4.46□□□□□ -1.7
CLDN4-204ENST00000466411 TOMM7Q9P0U1 55 aa4.46□□□□□ -1.7
CLDN4-204ENST00000466411 NDUFC2-KCTD14E9PQ53 114 aa4.45□□□□□ -1.7
CLDN4-204ENST00000466411 H0Y8G0 127 aa4.45□□□□□ -1.7
CLDN4-204ENST00000466411 MT1HL1P0DM35 61 aa4.45□□□□□ -1.7
CLDN4-204ENST00000466411 CIRBPQ14011 172 aaKnown RBP4.45□□□□□ -1.7
CLDN4-204ENST00000466411 KIAA0087Q14695 138 aa4.45□□□□□ -1.7
CLDN4-204ENST00000466411 ZC2HC1BQ5TFG8 222 aa4.45□□□□□ -1.7
CLDN4-204ENST00000466411 LINC01545Q5VT33 79 aa4.45□□□□□ -1.7
CLDN4-204ENST00000466411 SDIM1Q6ZPB5 146 aa4.45□□□□□ -1.7
CLDN4-204ENST00000466411 PLEKHB2Q96CS7 222 aa4.45□□□□□ -1.7
CLDN4-204ENST00000466411 CRCT1Q9UGL9 99 aa4.45□□□□□ -1.7
CLDN4-204ENST00000466411 TMEM223A0PJW6 202 aa4.44□□□□□ -1.7
CLDN4-204ENST00000466411 NUPR1O60356 82 aa4.44□□□□□ -1.7
CLDN4-204ENST00000466411 SPINK8P0C7L1 97 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms