RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 UNQ6190/PRO20217Q6UXQ8 127 aa12.91□□□□□ -0.34
SKA3-205ENST00000465471 PCLOQ9Y6V0 5065 aa12.9□□□□□ -0.34
SKA3-205ENST00000465471 TRAV12-1A0A0B4J245 112 aa12.9□□□□□ -0.34
SKA3-205ENST00000465471 LOC107984640A0A0U1RRK4 108 aa12.9□□□□□ -0.34
SKA3-205ENST00000465471 PACRGQ96M98 296 aaPredicted RBP12.9□□□□□ -0.34
SKA3-205ENST00000465471 C6orf48Q9UBA6 75 aa12.9□□□□□ -0.34
SKA3-205ENST00000465471 EPM2AB3EWF7 344 aa12.89□□□□□ -0.35
SKA3-205ENST00000465471 C2orf82Q6UX34 121 aa12.89□□□□□ -0.35
SKA3-205ENST00000465471 A0A087WYN8 130 aa12.88□□□□□ -0.35
SKA3-205ENST00000465471 IGKV2-24A0A0C4DH68 120 aa12.88□□□□□ -0.35
SKA3-205ENST00000465471 ZNF22P17026 224 aaPredicted RBP12.88□□□□□ -0.35
SKA3-205ENST00000465471 PTTG1IPP53801 180 aa12.88□□□□□ -0.35
SKA3-205ENST00000465471 LINC00528Q8N1L1 170 aa12.88□□□□□ -0.35
SKA3-205ENST00000465471 PLAC8Q9NZF1 115 aa12.88□□□□□ -0.35
SKA3-205ENST00000465471 LINC00474Q9P2X8 69 aa12.88□□□□□ -0.35
SKA3-205ENST00000465471 TRBV30A0A0K0K1B3 111 aa12.87□□□□□ -0.35
SKA3-205ENST00000465471 PRSS2P07478 247 aa12.87□□□□□ -0.35
SKA3-205ENST00000465471 TLX1NBP0CAT3 122 aa12.87□□□□□ -0.35
SKA3-205ENST00000465471 TOMM7Q9P0U1 55 aa12.87□□□□□ -0.35
SKA3-205ENST00000465471 C11orf86A6NJI1 115 aa12.86□□□□□ -0.35
SKA3-205ENST00000465471 H3BRM9 83 aa12.86□□□□□ -0.35
SKA3-205ENST00000465471 LEPROTL1O95214 131 aa12.86□□□□□ -0.35
SKA3-205ENST00000465471 MAJINQ3KP22 176 aa12.86□□□□□ -0.35
SKA3-205ENST00000465471 CHTOPQ9Y3Y2 248 aaKnown RBP12.86□□□□□ -0.35
SKA3-205ENST00000465471 IGLV5-39A0A0G2JS06 123 aa12.85□□□□□ -0.35
SKA3-205ENST00000465471 FAM229AH3BQW9 127 aa12.85□□□□□ -0.35
SKA3-205ENST00000465471 SPINK8P0C7L1 97 aa12.85□□□□□ -0.35
SKA3-205ENST00000465471 C6orf226Q5I0X4 101 aa12.85□□□□□ -0.35
SKA3-205ENST00000465471 COX7B2Q8TF08 81 aa12.84□□□□□ -0.35
SKA3-205ENST00000465471 F8VRH5 84 aa12.83□□□□□ -0.36
SKA3-205ENST00000465471 CXCL5P42830 114 aa12.83□□□□□ -0.36
SKA3-205ENST00000465471 CKS1BP61024 79 aa12.83□□□□□ -0.36
SKA3-205ENST00000465471 GAGE2BQ13066 116 aa12.83□□□□□ -0.36
SKA3-205ENST00000465471 SRRM2Q9UQ35 2752 aaKnown RBP12.83□□□□□ -0.36
SKA3-205ENST00000465471 RPL18AQ02543 176 aaKnown RBP12.82□□□□□ -0.36
SKA3-205ENST00000465471 Q6ZRP5 223 aa12.82□□□□□ -0.36
SKA3-205ENST00000465471 STPG4Q8N801 248 aa12.82□□□□□ -0.36
SKA3-205ENST00000465471 DPH3Q96FX2 82 aa12.82□□□□□ -0.36
SKA3-205ENST00000465471 HSPB8Q9UJY1 196 aa12.82□□□□□ -0.36
SKA3-205ENST00000465471 KRTAP10-4P60372 401 aaPredicted RBP12.81□□□□□ -0.36
SKA3-205ENST00000465471 ODF1Q14990 250 aa12.81□□□□□ -0.36
SKA3-205ENST00000465471 COA6Q5JTJ3 125 aaKnown RBP12.81□□□□□ -0.36
SKA3-205ENST00000465471 NDUFC2-KCTD14E9PQ53 114 aa12.79□□□□□ -0.36
SKA3-205ENST00000465471 PLA2G1BP04054 148 aaKnown RBP12.79□□□□□ -0.36
SKA3-205ENST00000465471 FABP4P15090 132 aa12.79□□□□□ -0.36
SKA3-205ENST00000465471 C9orf116Q5BN46 136 aaPredicted RBP12.79□□□□□ -0.36
SKA3-205ENST00000465471 TMEM170BQ5T4T1 132 aa12.78□□□□□ -0.36
SKA3-205ENST00000465471 TMEM223A0PJW6 202 aa12.76□□□□□ -0.37
SKA3-205ENST00000465471 A0A1W2PNN7 141 aa12.75□□□□□ -0.37
SKA3-205ENST00000465471 H0Y8G0 127 aa12.75□□□□□ -0.37
SKA3-205ENST00000465471 RPL37AP61513 92 aaKnown RBP12.73□□□□□ -0.37
SKA3-205ENST00000465471 GAGE2EQ4V326 116 aa12.73□□□□□ -0.37
SKA3-205ENST00000465471 GAGE2DQ9UEU5 116 aa12.73□□□□□ -0.37
SKA3-205ENST00000465471 C9orf129Q5T035 196 aaKnown RBP12.72□□□□□ -0.37
SKA3-205ENST00000465471 MAP1LC3CQ9BXW4 147 aa12.72□□□□□ -0.37
SKA3-205ENST00000465471 INAFM2P0DMQ5 153 aa12.71□□□□□ -0.37
SKA3-205ENST00000465471 PLNP26678 52 aa12.71□□□□□ -0.37
SKA3-205ENST00000465471 KRTAP7-1Q8IUC3 87 aa12.7□□□□□ -0.38
SKA3-205ENST00000465471 C7orf33Q8WU49 177 aa12.7□□□□□ -0.38
SKA3-205ENST00000465471 ZNF625Q96I27 306 aaPredicted RBP12.7□□□□□ -0.38
SKA3-205ENST00000465471 PKHD1L1Q86WI1 4243 aa12.69□□□□□ -0.38
SKA3-205ENST00000465471 FAM168BA1KXE4 195 aa12.69□□□□□ -0.38
SKA3-205ENST00000465471 SFTA2Q6UW10 78 aa12.69□□□□□ -0.38
SKA3-205ENST00000465471 SYS1-DBNDD2H3BUS1 97 aa12.68□□□□□ -0.38
SKA3-205ENST00000465471 DPM2O94777 84 aa12.68□□□□□ -0.38
SKA3-205ENST00000465471 PMCHL2Q9BQD1 86 aa12.67□□□□□ -0.38
SKA3-205ENST00000465471 MYCBP2O75592 4640 aa12.67□□□□□ -0.38
SKA3-205ENST00000465471 IGKCP01834 107 aa12.66□□□□□ -0.38
SKA3-205ENST00000465471 XAGE1AQ9HD64 81 aa12.65□□□□□ -0.38
SKA3-205ENST00000465471 FLG2Q5D862 2391 aaPredicted RBP12.64□□□□□ -0.39
SKA3-205ENST00000465471 PRR3P79522 188 aaKnown RBP12.64□□□□□ -0.39
SKA3-205ENST00000465471 LINC01545Q5VT33 79 aa12.64□□□□□ -0.39
SKA3-205ENST00000465471 PHF5AQ7RTV0 110 aaKnown RBP12.64□□□□□ -0.39
SKA3-205ENST00000465471 FAM19A5Q7Z5A7 132 aaPredicted RBP12.64□□□□□ -0.39
SKA3-205ENST00000465471 HNRNPA3P51991 378 aaKnown RBP12.63□□□□□ -0.39
SKA3-205ENST00000465471 PET117Q6UWS5 81 aa12.63□□□□□ -0.39
SKA3-205ENST00000465471 ERG28Q9UKR5 140 aa12.63□□□□□ -0.39
SKA3-205ENST00000465471 C3orf79P0CE67 100 aa12.62□□□□□ -0.39
SKA3-205ENST00000465471 COX17Q14061 63 aa12.62□□□□□ -0.39
SKA3-205ENST00000465471 TSPEAR-AS2P59090 65 aa12.61□□□□□ -0.39
SKA3-205ENST00000465471 SERTAD4-AS1Q5TG53 156 aa12.61□□□□□ -0.39
SKA3-205ENST00000465471 M0QXV9 152 aa12.6□□□□□ -0.39
SKA3-205ENST00000465471 LEPROTO15243 131 aa12.6□□□□□ -0.39
SKA3-205ENST00000465471 PFN2P35080 140 aa12.6□□□□□ -0.39
SKA3-205ENST00000465471 HERVK_113P61574 105 aa12.59□□□□□ -0.39
SKA3-205ENST00000465471 PLEKHB2Q96CS7 222 aa12.59□□□□□ -0.39
SKA3-205ENST00000465471 PLA2G2DQ9UNK4 145 aa12.59□□□□□ -0.39
SKA3-205ENST00000465471 HIST3H2BBQ8N257 126 aa12.58□□□□□ -0.4
SKA3-205ENST00000465471 NDUFA12Q9UI09 145 aa12.58□□□□□ -0.4
SKA3-205ENST00000465471 HERV-K104P63124 156 aa12.57□□□□□ -0.4
SKA3-205ENST00000465471 KRTAP11-1Q8IUC1 163 aa12.57□□□□□ -0.4
SKA3-205ENST00000465471 J3QQQ9 107 aa12.56□□□□□ -0.4
SKA3-205ENST00000465471 KRTDAPP60985 99 aa12.56□□□□□ -0.4
SKA3-205ENST00000465471 SND1-IT1Q9HBX3 110 aa12.56□□□□□ -0.4
SKA3-205ENST00000465471 TP73-AS1Q9UF72 201 aa12.56□□□□□ -0.4
SKA3-205ENST00000465471 PSORS1C2Q9UIG4 136 aa12.56□□□□□ -0.4
SKA3-205ENST00000465471 IGLV5-37A0A075B6J1 123 aa12.55□□□□□ -0.4
SKA3-205ENST00000465471 E9PLD3 99 aa12.55□□□□□ -0.4
SKA3-205ENST00000465471 C22orf24Q9Y442 160 aa12.55□□□□□ -0.4
SKA3-205ENST00000465471 MYMXA0A1B0GTQ4 84 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms