RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, human

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF4-209	ENST00000465132	HIST1H2BL	Q99880	126 aa		11.39	□□□□□ -0.59
CPSF4-209	ENST00000465132	FLG2	Q5D862	2391 aa	Predicted RBP	11.38	□□□□□ -0.59
CPSF4-209	ENST00000465132	IGKC	P01834	107 aa		11.38	□□□□□ -0.59
CPSF4-209	ENST00000465132	HERVK_113	P61574	105 aa		11.38	□□□□□ -0.59
CPSF4-209	ENST00000465132	CNBP	P62633	177 aa	Known RBP	11.38	□□□□□ -0.59
CPSF4-209	ENST00000465132	C11orf86	A6NJI1	115 aa		11.37	□□□□□ -0.59
CPSF4-209	ENST00000465132	C3orf79	P0CE67	100 aa		11.37	□□□□□ -0.59
CPSF4-209	ENST00000465132	ZNF22	P17026	224 aa	Predicted RBP	11.37	□□□□□ -0.59
CPSF4-209	ENST00000465132	CXCL5	P42830	114 aa		11.37	□□□□□ -0.59
CPSF4-209	ENST00000465132	CKS1B	P61024	79 aa		11.37	□□□□□ -0.59
CPSF4-209	ENST00000465132	HIGD2B	Q4VC39	106 aa		11.37	□□□□□ -0.59
CPSF4-209	ENST00000465132	C6orf226	Q5I0X4	101 aa		11.37	□□□□□ -0.59
CPSF4-209	ENST00000465132	SFTA2	Q6UW10	78 aa		11.37	□□□□□ -0.59
CPSF4-209	ENST00000465132		Q8IZM0	81 aa		11.37	□□□□□ -0.59
CPSF4-209	ENST00000465132	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	11.36	□□□□□ -0.59
CPSF4-209	ENST00000465132	WFDC2	Q14508	124 aa		11.36	□□□□□ -0.59
CPSF4-209	ENST00000465132	LINC01545	Q5VT33	79 aa		11.36	□□□□□ -0.59
CPSF4-209	ENST00000465132	CAMK2N2	Q96S95	79 aa		11.36	□□□□□ -0.59
CPSF4-209	ENST00000465132	SRRM2	Q9UQ35	2752 aa	Known RBP	11.35	□□□□□ -0.59
CPSF4-209	ENST00000465132	NDUFA1	O15239	70 aa		11.35	□□□□□ -0.59
CPSF4-209	ENST00000465132	SMIM1	B2RUZ4	78 aa		11.34	□□□□□ -0.59
CPSF4-209	ENST00000465132	SYCN	Q0VAF6	134 aa		11.34	□□□□□ -0.59
CPSF4-209	ENST00000465132	COX7B2	Q8TF08	81 aa		11.34	□□□□□ -0.59
CPSF4-209	ENST00000465132	FAM30A	Q9NZY2	134 aa		11.34	□□□□□ -0.59
CPSF4-209	ENST00000465132	TOMM7	Q9P0U1	55 aa		11.34	□□□□□ -0.59
CPSF4-209	ENST00000465132	TMA7	Q9Y2S6	64 aa	Known RBP	11.34	□□□□□ -0.59
CPSF4-209	ENST00000465132	SPINK8	P0C7L1	97 aa		11.33	□□□□□ -0.6
CPSF4-209	ENST00000465132	CARD19	Q96LW7	228 aa		11.33	□□□□□ -0.6
CPSF4-209	ENST00000465132	DNAH8	Q96JB1	4490 aa		11.32	□□□□□ -0.6
CPSF4-209	ENST00000465132	TMEM223	A0PJW6	202 aa		11.32	□□□□□ -0.6
CPSF4-209	ENST00000465132	RNF151	Q2KHN1	245 aa		11.32	□□□□□ -0.6
CPSF4-209	ENST00000465132	IGLV5-39	A0A0G2JS06	123 aa		11.31	□□□□□ -0.6
CPSF4-209	ENST00000465132	TRBV30	A0A0K0K1B3	111 aa		11.3	□□□□□ -0.6
CPSF4-209	ENST00000465132	C9orf163	Q8N9P6	203 aa		11.3	□□□□□ -0.6
CPSF4-209	ENST00000465132	PLEKHB2	Q96CS7	222 aa		11.3	□□□□□ -0.6
CPSF4-209	ENST00000465132	PMCHL2	Q9BQD1	86 aa		11.29	□□□□□ -0.6
CPSF4-209	ENST00000465132		J3QL48	77 aa		11.28	□□□□□ -0.6
CPSF4-209	ENST00000465132	KIAA0087	Q14695	138 aa		11.28	□□□□□ -0.6
CPSF4-209	ENST00000465132		Q6ZSA8	131 aa		11.28	□□□□□ -0.6
CPSF4-209	ENST00000465132	LINC00587	B1AMM8	73 aa		11.26	□□□□□ -0.61
CPSF4-209	ENST00000465132	HSBP1L1	C9JCN9	74 aa		11.26	□□□□□ -0.61
CPSF4-209	ENST00000465132	LEPROT	O15243	131 aa		11.26	□□□□□ -0.61
CPSF4-209	ENST00000465132	SCGB1D1	O95968	90 aa		11.26	□□□□□ -0.61
CPSF4-209	ENST00000465132	LINC00474	Q9P2X8	69 aa		11.26	□□□□□ -0.61
CPSF4-209	ENST00000465132	PLA2G1B	P04054	148 aa	Known RBP	11.25	□□□□□ -0.61
CPSF4-209	ENST00000465132	NMU	P48645	174 aa		11.25	□□□□□ -0.61
CPSF4-209	ENST00000465132		Q6ZRU5	148 aa		11.25	□□□□□ -0.61
CPSF4-209	ENST00000465132	LINC00526	Q96FQ7	95 aa		11.25	□□□□□ -0.61
CPSF4-209	ENST00000465132	LOC107984640	A0A0U1RRK4	108 aa		11.24	□□□□□ -0.61
CPSF4-209	ENST00000465132	LGALS3	P17931	250 aa	Known RBP	11.24	□□□□□ -0.61
CPSF4-209	ENST00000465132	HERV-K104	P63124	156 aa		11.24	□□□□□ -0.61
CPSF4-209	ENST00000465132	LINC00528	Q8N1L1	170 aa		11.24	□□□□□ -0.61
CPSF4-209	ENST00000465132	MYMX	A0A1B0GTQ4	84 aa		11.23	□□□□□ -0.61
CPSF4-209	ENST00000465132		E9PLD3	99 aa		11.23	□□□□□ -0.61
CPSF4-209	ENST00000465132	SLPI	P03973	132 aa		11.23	□□□□□ -0.61
CPSF4-209	ENST00000465132	UNQ6190/PRO20217	Q6UXQ8	127 aa		11.23	□□□□□ -0.61
CPSF4-209	ENST00000465132		J3QQQ9	107 aa		11.22	□□□□□ -0.61
CPSF4-209	ENST00000465132	C2orf82	Q6UX34	121 aa		11.22	□□□□□ -0.61
CPSF4-209	ENST00000465132	KRTAP29-1	A8MX34	341 aa	Predicted RBP	11.21	□□□□□ -0.61
CPSF4-209	ENST00000465132	COX17	Q14061	63 aa		11.21	□□□□□ -0.61
CPSF4-209	ENST00000465132	TLX1NB	P0CAT3	122 aa		11.2	□□□□□ -0.62
CPSF4-209	ENST00000465132	SDIM1	Q6ZPB5	146 aa		11.2	□□□□□ -0.62
CPSF4-209	ENST00000465132	NDUFC2-KCTD14	E9PQ53	114 aa		11.19	□□□□□ -0.62
CPSF4-209	ENST00000465132	LINC01620	Q4KN68	170 aa		11.19	□□□□□ -0.62
CPSF4-209	ENST00000465132	C6orf48	Q9UBA6	75 aa		11.19	□□□□□ -0.62
CPSF4-209	ENST00000465132	NDUFA12	Q9UI09	145 aa		11.19	□□□□□ -0.62
CPSF4-209	ENST00000465132	SCX	Q7RTU7	201 aa		11.18	□□□□□ -0.62
CPSF4-209	ENST00000465132	STPG4	Q8N801	248 aa		11.18	□□□□□ -0.62
CPSF4-209	ENST00000465132	DPH3	Q96FX2	82 aa		11.18	□□□□□ -0.62
CPSF4-209	ENST00000465132	RPL18A	Q02543	176 aa	Known RBP	11.17	□□□□□ -0.62
CPSF4-209	ENST00000465132	CIRBP	Q14011	172 aa	Known RBP	11.17	□□□□□ -0.62
CPSF4-209	ENST00000465132	JOSD1	Q15040	202 aa	Predicted RBP	11.17	□□□□□ -0.62
CPSF4-209	ENST00000465132	C10orf25	Q5T742	122 aa		11.17	□□□□□ -0.62
CPSF4-209	ENST00000465132	ZNF625	Q96I27	306 aa	Predicted RBP	11.17	□□□□□ -0.62
CPSF4-209	ENST00000465132	ATOH7	Q8N100	152 aa		11.16	□□□□□ -0.62
CPSF4-209	ENST00000465132	MEIG1	Q5JSS6	88 aa		11.15	□□□□□ -0.62
CPSF4-209	ENST00000465132	ERG28	Q9UKR5	140 aa		11.15	□□□□□ -0.62
CPSF4-209	ENST00000465132	PTTG1IP	P53801	180 aa		11.14	□□□□□ -0.63
CPSF4-209	ENST00000465132	GAGE2B	Q13066	116 aa		11.14	□□□□□ -0.63
CPSF4-209	ENST00000465132	KRTAP10-4	P60372	401 aa	Predicted RBP	11.13	□□□□□ -0.63
CPSF4-209	ENST00000465132	PFN2	P35080	140 aa		11.12	□□□□□ -0.63
CPSF4-209	ENST00000465132	LINC00158	P58513	81 aa		11.12	□□□□□ -0.63
CPSF4-209	ENST00000465132	IGKV2-24	A0A0C4DH68	120 aa		11.11	□□□□□ -0.63
CPSF4-209	ENST00000465132	ZNF815P	A8K554	130 aa		11.11	□□□□□ -0.63
CPSF4-209	ENST00000465132	MAJIN	Q3KP22	176 aa		11.11	□□□□□ -0.63
CPSF4-209	ENST00000465132	C9orf116	Q5BN46	136 aa	Predicted RBP	11.11	□□□□□ -0.63
CPSF4-209	ENST00000465132	CIRBP-AS1	Q8TBR5	109 aa		11.11	□□□□□ -0.63
CPSF4-209	ENST00000465132	VAMP8	Q9BV40	100 aa		11.11	□□□□□ -0.63
CPSF4-209	ENST00000465132		A0A096LNI7	61 aa		11.1	□□□□□ -0.63
CPSF4-209	ENST00000465132	TSPEAR-AS2	P59090	65 aa		11.1	□□□□□ -0.63
CPSF4-209	ENST00000465132	GAGE2E	Q4V326	116 aa		11.1	□□□□□ -0.63
CPSF4-209	ENST00000465132		Q6ZRP5	223 aa		11.1	□□□□□ -0.63
CPSF4-209	ENST00000465132	SPACA4	Q8TDM5	124 aa		11.1	□□□□□ -0.63
CPSF4-209	ENST00000465132	GAGE2D	Q9UEU5	116 aa		11.1	□□□□□ -0.63
CPSF4-209	ENST00000465132	HMCN2	Q8NDA2	5059 aa		11.1	□□□□□ -0.63
CPSF4-209	ENST00000465132	ANKRD39	Q53RE8	183 aa		11.08	□□□□□ -0.64
CPSF4-209	ENST00000465132	SERTAD4-AS1	Q5TG53	156 aa		11.08	□□□□□ -0.64
CPSF4-209	ENST00000465132	SCGB1D4	Q6XE38	83 aa		11.08	□□□□□ -0.64
CPSF4-209	ENST00000465132	COPS9	Q8WXC6	57 aa		11.08	□□□□□ -0.64
CPSF4-209	ENST00000465132	LRP1	Q07954	4544 aa	Known RBP	11.08	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms