RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 MAJINQ3KP22 176 aa9.23□□□□□ -0.93
SQSTM1-205ENST00000464493 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.23□□□□□ -0.93
SQSTM1-205ENST00000464493 Q5VSD8 79 aa9.23□□□□□ -0.93
SQSTM1-205ENST00000464493 C2orf82Q6UX34 121 aa9.23□□□□□ -0.93
SQSTM1-205ENST00000464493 Q8IZM0 81 aa9.23□□□□□ -0.93
SQSTM1-205ENST00000464493 HIST1H2BHQ93079 126 aa9.23□□□□□ -0.93
SQSTM1-205ENST00000464493 HIST1H2BNQ99877 126 aa9.23□□□□□ -0.93
SQSTM1-205ENST00000464493 HIST1H2BMQ99879 126 aa9.23□□□□□ -0.93
SQSTM1-205ENST00000464493 A0A087WYN8 130 aa9.22□□□□□ -0.93
SQSTM1-205ENST00000464493 TRAV12-1A0A0B4J245 112 aa9.22□□□□□ -0.93
SQSTM1-205ENST00000464493 SMIM1B2RUZ4 78 aa9.22□□□□□ -0.93
SQSTM1-205ENST00000464493 LEPROTL1O95214 131 aa9.22□□□□□ -0.93
SQSTM1-205ENST00000464493 CKS1BP61024 79 aa9.22□□□□□ -0.93
SQSTM1-205ENST00000464493 GAGE2BQ13066 116 aa9.22□□□□□ -0.93
SQSTM1-205ENST00000464493 C6orf48Q9UBA6 75 aa9.22□□□□□ -0.93
SQSTM1-205ENST00000464493 TRBV30A0A0K0K1B3 111 aa9.21□□□□□ -0.94
SQSTM1-205ENST00000464493 SPINK8P0C7L1 97 aa9.21□□□□□ -0.94
SQSTM1-205ENST00000464493 PTTG1IPP53801 180 aa9.21□□□□□ -0.94
SQSTM1-205ENST00000464493 LINC00528Q8N1L1 170 aa9.21□□□□□ -0.94
SQSTM1-205ENST00000464493 CHTOPQ9Y3Y2 248 aaKnown RBP9.21□□□□□ -0.94
SQSTM1-205ENST00000464493 ZNF22P17026 224 aaPredicted RBP9.2□□□□□ -0.94
SQSTM1-205ENST00000464493 RPL18AQ02543 176 aaKnown RBP9.2□□□□□ -0.94
SQSTM1-205ENST00000464493 STPG4Q8N801 248 aa9.2□□□□□ -0.94
SQSTM1-205ENST00000464493 PLAC8Q9NZF1 115 aa9.2□□□□□ -0.94
SQSTM1-205ENST00000464493 HSPB8Q9UJY1 196 aa9.2□□□□□ -0.94
SQSTM1-205ENST00000464493 C11orf86A6NJI1 115 aa9.19□□□□□ -0.94
SQSTM1-205ENST00000464493 TLX1NBP0CAT3 122 aa9.19□□□□□ -0.94
SQSTM1-205ENST00000464493 COX7B2Q8TF08 81 aa9.19□□□□□ -0.94
SQSTM1-205ENST00000464493 SRRM2Q9UQ35 2752 aaKnown RBP9.19□□□□□ -0.94
SQSTM1-205ENST00000464493 FABP4P15090 132 aa9.18□□□□□ -0.94
SQSTM1-205ENST00000464493 CXCL5P42830 114 aa9.18□□□□□ -0.94
SQSTM1-205ENST00000464493 TMEM170BQ5T4T1 132 aa9.18□□□□□ -0.94
SQSTM1-205ENST00000464493 F8VRH5 84 aa9.17□□□□□ -0.94
SQSTM1-205ENST00000464493 H0Y8G0 127 aa9.17□□□□□ -0.94
SQSTM1-205ENST00000464493 PLA2G1BP04054 148 aaKnown RBP9.17□□□□□ -0.94
SQSTM1-205ENST00000464493 C9orf116Q5BN46 136 aaPredicted RBP9.17□□□□□ -0.94
SQSTM1-205ENST00000464493 Q6ZRP5 223 aa9.17□□□□□ -0.94
SQSTM1-205ENST00000464493 VPS13BQ7Z7G8 4022 aa9.16□□□□□ -0.94
SQSTM1-205ENST00000464493 IGLV5-39A0A0G2JS06 123 aa9.16□□□□□ -0.94
SQSTM1-205ENST00000464493 NDUFC2-KCTD14E9PQ53 114 aa9.15□□□□□ -0.94
SQSTM1-205ENST00000464493 ODF1Q14990 250 aa9.15□□□□□ -0.94
SQSTM1-205ENST00000464493 GAGE2EQ4V326 116 aa9.15□□□□□ -0.94
SQSTM1-205ENST00000464493 GAGE2DQ9UEU5 116 aa9.15□□□□□ -0.94
SQSTM1-205ENST00000464493 A0A1W2PNN7 141 aa9.13□□□□□ -0.95
SQSTM1-205ENST00000464493 COA6Q5JTJ3 125 aaKnown RBP9.13□□□□□ -0.95
SQSTM1-205ENST00000464493 MAP1LC3CQ9BXW4 147 aa9.13□□□□□ -0.95
SQSTM1-205ENST00000464493 ABCA13Q86UQ4 5058 aa9.12□□□□□ -0.95
SQSTM1-205ENST00000464493 TMEM223A0PJW6 202 aa9.12□□□□□ -0.95
SQSTM1-205ENST00000464493 INAFM2P0DMQ5 153 aa9.12□□□□□ -0.95
SQSTM1-205ENST00000464493 RPL37AP61513 92 aaKnown RBP9.12□□□□□ -0.95
SQSTM1-205ENST00000464493 C7orf33Q8WU49 177 aa9.12□□□□□ -0.95
SQSTM1-205ENST00000464493 PCLOQ9Y6V0 5065 aa9.11□□□□□ -0.95
SQSTM1-205ENST00000464493 PLNP26678 52 aa9.1□□□□□ -0.95
SQSTM1-205ENST00000464493 KRTAP10-4P60372 401 aaPredicted RBP9.1□□□□□ -0.95
SQSTM1-205ENST00000464493 DPM2O94777 84 aa9.09□□□□□ -0.95
SQSTM1-205ENST00000464493 FAM168BA1KXE4 195 aa9.08□□□□□ -0.96
SQSTM1-205ENST00000464493 SYS1-DBNDD2H3BUS1 97 aa9.08□□□□□ -0.96
SQSTM1-205ENST00000464493 C9orf129Q5T035 196 aaKnown RBP9.08□□□□□ -0.96
SQSTM1-205ENST00000464493 SFTA2Q6UW10 78 aa9.08□□□□□ -0.96
SQSTM1-205ENST00000464493 PMCHL2Q9BQD1 86 aa9.08□□□□□ -0.96
SQSTM1-205ENST00000464493 IGKCP01834 107 aa9.07□□□□□ -0.96
SQSTM1-205ENST00000464493 FAM19A5Q7Z5A7 132 aaPredicted RBP9.06□□□□□ -0.96
SQSTM1-205ENST00000464493 ZNF625Q96I27 306 aaPredicted RBP9.06□□□□□ -0.96
SQSTM1-205ENST00000464493 XAGE1AQ9HD64 81 aa9.06□□□□□ -0.96
SQSTM1-205ENST00000464493 PFN2P35080 140 aa9.05□□□□□ -0.96
SQSTM1-205ENST00000464493 PHF5AQ7RTV0 110 aaKnown RBP9.05□□□□□ -0.96
SQSTM1-205ENST00000464493 COX17Q14061 63 aa9.04□□□□□ -0.96
SQSTM1-205ENST00000464493 PET117Q6UWS5 81 aa9.04□□□□□ -0.96
SQSTM1-205ENST00000464493 KRTAP7-1Q8IUC3 87 aa9.04□□□□□ -0.96
SQSTM1-205ENST00000464493 ERG28Q9UKR5 140 aa9.04□□□□□ -0.96
SQSTM1-205ENST00000464493 LEPROTO15243 131 aa9.03□□□□□ -0.96
SQSTM1-205ENST00000464493 C3orf79P0CE67 100 aa9.03□□□□□ -0.96
SQSTM1-205ENST00000464493 HERVK_113P61574 105 aa9.03□□□□□ -0.96
SQSTM1-205ENST00000464493 LINC01545Q5VT33 79 aa9.03□□□□□ -0.96
SQSTM1-205ENST00000464493 FLG2Q5D862 2391 aaPredicted RBP9.02□□□□□ -0.96
SQSTM1-205ENST00000464493 PRR3P79522 188 aaKnown RBP9.02□□□□□ -0.97
SQSTM1-205ENST00000464493 PLEKHB2Q96CS7 222 aa9.02□□□□□ -0.97
SQSTM1-205ENST00000464493 M0QXV9 152 aa9.01□□□□□ -0.97
SQSTM1-205ENST00000464493 KRTDAPP60985 99 aa9.01□□□□□ -0.97
SQSTM1-205ENST00000464493 SERTAD4-AS1Q5TG53 156 aa9.01□□□□□ -0.97
SQSTM1-205ENST00000464493 NDUFA12Q9UI09 145 aa9.01□□□□□ -0.97
SQSTM1-205ENST00000464493 MYMXA0A1B0GTQ4 84 aa9□□□□□ -0.97
SQSTM1-205ENST00000464493 HNRNPA3P51991 378 aaKnown RBP9□□□□□ -0.97
SQSTM1-205ENST00000464493 HERV-K104P63124 156 aa9□□□□□ -0.97
SQSTM1-205ENST00000464493 PLA2G2DQ9UNK4 145 aa9□□□□□ -0.97
SQSTM1-205ENST00000464493 C22orf24Q9Y442 160 aa9□□□□□ -0.97
SQSTM1-205ENST00000464493 J3QQQ9 107 aa8.99□□□□□ -0.97
SQSTM1-205ENST00000464493 S100A6P06703 90 aa8.99□□□□□ -0.97
SQSTM1-205ENST00000464493 LINC00158P58513 81 aa8.99□□□□□ -0.97
SQSTM1-205ENST00000464493 TSPEAR-AS2P59090 65 aa8.99□□□□□ -0.97
SQSTM1-205ENST00000464493 SND1-IT1Q9HBX3 110 aa8.99□□□□□ -0.97
SQSTM1-205ENST00000464493 PSORS1C2Q9UIG4 136 aa8.99□□□□□ -0.97
SQSTM1-205ENST00000464493 MYCBP2O75592 4640 aa8.98□□□□□ -0.97
SQSTM1-205ENST00000464493 LINC00587B1AMM8 73 aa8.98□□□□□ -0.97
SQSTM1-205ENST00000464493 LGALS3P17931 250 aaKnown RBP8.98□□□□□ -0.97
SQSTM1-205ENST00000464493 S100A2P29034 98 aa8.98□□□□□ -0.97
SQSTM1-205ENST00000464493 HIST3H2BBQ8N257 126 aa8.98□□□□□ -0.97
SQSTM1-205ENST00000464493 A0A0U1RRA0 63 aa8.97□□□□□ -0.97
SQSTM1-205ENST00000464493 E9PLD3 99 aa8.97□□□□□ -0.97
SQSTM1-205ENST00000464493 SMIM13P0DJ93 91 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms