RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 HERC1Q15751 4861 aa11.75□□□□□ -0.53
SQSTM1-204ENST00000453046 TMEM223A0PJW6 202 aa11.75□□□□□ -0.53
SQSTM1-204ENST00000453046 XCL1P47992 114 aa11.75□□□□□ -0.53
SQSTM1-204ENST00000453046 MAJINQ3KP22 176 aa11.75□□□□□ -0.53
SQSTM1-204ENST00000453046 SPATA45Q537H7 98 aa11.75□□□□□ -0.53
SQSTM1-204ENST00000453046 IGLV10-54A0A075B6I4 117 aa11.74□□□□□ -0.53
SQSTM1-204ENST00000453046 PLA2G1BP04054 148 aaKnown RBP11.74□□□□□ -0.53
SQSTM1-204ENST00000453046 ANKRD39Q53RE8 183 aa11.74□□□□□ -0.53
SQSTM1-204ENST00000453046 LINC01561Q8N1V8 128 aa11.74□□□□□ -0.53
SQSTM1-204ENST00000453046 STPG4Q8N801 248 aa11.74□□□□□ -0.53
SQSTM1-204ENST00000453046 A0A087WZ39 114 aa11.73□□□□□ -0.53
SQSTM1-204ENST00000453046 E9PLD3 99 aa11.73□□□□□ -0.53
SQSTM1-204ENST00000453046 LINC00528Q8N1L1 170 aa11.73□□□□□ -0.53
SQSTM1-204ENST00000453046 DMBT1Q9UGM3 2413 aaPredicted RBP11.73□□□□□ -0.53
SQSTM1-204ENST00000453046 FLG2Q5D862 2391 aaPredicted RBP11.72□□□□□ -0.53
SQSTM1-204ENST00000453046 FOXI1Q12951 378 aa11.72□□□□□ -0.53
SQSTM1-204ENST00000453046 MYCBP2O75592 4640 aa11.72□□□□□ -0.53
SQSTM1-204ENST00000453046 SMIM1B2RUZ4 78 aa11.71□□□□□ -0.53
SQSTM1-204ENST00000453046 USP17L23D6RBM5 183 aa11.71□□□□□ -0.53
SQSTM1-204ENST00000453046 COX7A2LO14548 114 aa11.71□□□□□ -0.53
SQSTM1-204ENST00000453046 SCXQ7RTU7 201 aa11.71□□□□□ -0.53
SQSTM1-204ENST00000453046 IGHV1-58A0A0C4DH39 117 aa11.7□□□□□ -0.54
SQSTM1-204ENST00000453046 IGLV5-39A0A0G2JS06 123 aa11.7□□□□□ -0.54
SQSTM1-204ENST00000453046 GAGE12HA6NDE8 117 aa11.7□□□□□ -0.54
SQSTM1-204ENST00000453046 SPINK8P0C7L1 97 aa11.7□□□□□ -0.54
SQSTM1-204ENST00000453046 KRTAP26-1Q6PEX3 210 aa11.69□□□□□ -0.54
SQSTM1-204ENST00000453046 PLEKHB2Q96CS7 222 aa11.69□□□□□ -0.54
SQSTM1-204ENST00000453046 LEPROTO15243 131 aa11.68□□□□□ -0.54
SQSTM1-204ENST00000453046 C5orf38Q86SI9 138 aa11.68□□□□□ -0.54
SQSTM1-204ENST00000453046 IGKV2D-26A0A0A0MRZ7 120 aa11.67□□□□□ -0.54
SQSTM1-204ENST00000453046 NMUP48645 174 aa11.67□□□□□ -0.54
SQSTM1-204ENST00000453046 IGHV3-64A0A075B6Q5 118 aa11.66□□□□□ -0.54
SQSTM1-204ENST00000453046 APOMO95445 188 aa11.66□□□□□ -0.54
SQSTM1-204ENST00000453046 MALP21145 153 aa11.66□□□□□ -0.54
SQSTM1-204ENST00000453046 CIRBP-AS1Q8TBR5 109 aa11.66□□□□□ -0.54
SQSTM1-204ENST00000453046 J3QQQ9 107 aa11.65□□□□□ -0.54
SQSTM1-204ENST00000453046 COX8AP10176 69 aa11.65□□□□□ -0.54
SQSTM1-204ENST00000453046 LGALS3P17931 250 aaKnown RBP11.65□□□□□ -0.54
SQSTM1-204ENST00000453046 TSTD3H0UI37 97 aa11.64□□□□□ -0.55
SQSTM1-204ENST00000453046 J3QL48 77 aa11.64□□□□□ -0.55
SQSTM1-204ENST00000453046 TSPEAR-AS2P59090 65 aa11.64□□□□□ -0.55
SQSTM1-204ENST00000453046 DLEU1O43261 78 aa11.62□□□□□ -0.55
SQSTM1-204ENST00000453046 PCP2Q8IVA1 136 aa11.62□□□□□ -0.55
SQSTM1-204ENST00000453046 Q8IZM0 81 aa11.62□□□□□ -0.55
SQSTM1-204ENST00000453046 COX7B2Q8TF08 81 aa11.62□□□□□ -0.55
SQSTM1-204ENST00000453046 ORAOV1Q8WV07 137 aa11.62□□□□□ -0.55
SQSTM1-204ENST00000453046 UQCR10Q9UDW1 63 aa11.62□□□□□ -0.55
SQSTM1-204ENST00000453046 SLC25A34Q6PIV7 304 aa11.61□□□□□ -0.55
SQSTM1-204ENST00000453046 SFTA2Q6UW10 78 aa11.61□□□□□ -0.55
SQSTM1-204ENST00000453046 BOD1L2Q8IYS8 172 aa11.61□□□□□ -0.55
SQSTM1-204ENST00000453046 C9orf163Q8N9P6 203 aa11.61□□□□□ -0.55
SQSTM1-204ENST00000453046 C14orf144Q96I85 54 aa11.61□□□□□ -0.55
SQSTM1-204ENST00000453046 PRO1933Q9H354 126 aa11.61□□□□□ -0.55
SQSTM1-204ENST00000453046 ZNF815PA8K554 130 aa11.6□□□□□ -0.55
SQSTM1-204ENST00000453046 MYMXA0A1B0GTQ4 84 aa11.59□□□□□ -0.55
SQSTM1-204ENST00000453046 NDUFA1O15239 70 aa11.59□□□□□ -0.55
SQSTM1-204ENST00000453046 PRSS2P07478 247 aa11.59□□□□□ -0.55
SQSTM1-204ENST00000453046 CXCL5P42830 114 aa11.59□□□□□ -0.55
SQSTM1-204ENST00000453046 SPAG11BQ08648 103 aa11.59□□□□□ -0.55
SQSTM1-204ENST00000453046 CFAP161Q6P656 301 aa11.59□□□□□ -0.55
SQSTM1-204ENST00000453046 TOMM7Q9P0U1 55 aa11.59□□□□□ -0.55
SQSTM1-204ENST00000453046 NDUFA12Q9UI09 145 aa11.59□□□□□ -0.55
SQSTM1-204ENST00000453046 C15orf56Q8N910 161 aa11.58□□□□□ -0.56
SQSTM1-204ENST00000453046 TTTY13Q9BZ97 58 aa11.58□□□□□ -0.56
SQSTM1-204ENST00000453046 GVQW2A0A096LPI5 108 aaPredicted RBP11.57□□□□□ -0.56
SQSTM1-204ENST00000453046 KIAA0087Q14695 138 aa11.57□□□□□ -0.56
SQSTM1-204ENST00000453046 MIEN1Q9BRT3 115 aa11.57□□□□□ -0.56
SQSTM1-204ENST00000453046 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.56□□□□□ -0.56
SQSTM1-204ENST00000453046 ZNF625Q96I27 306 aaPredicted RBP11.56□□□□□ -0.56
SQSTM1-204ENST00000453046 CNBPP62633 177 aaKnown RBP11.55□□□□□ -0.56
SQSTM1-204ENST00000453046 HERV-K104P63124 156 aa11.55□□□□□ -0.56
SQSTM1-204ENST00000453046 SDIM1Q6ZPB5 146 aa11.55□□□□□ -0.56
SQSTM1-204ENST00000453046 KRTAP29-1A8MX34 341 aaPredicted RBP11.54□□□□□ -0.56
SQSTM1-204ENST00000453046 F8WDY8 70 aa11.54□□□□□ -0.56
SQSTM1-204ENST00000453046 RPL37AP61513 92 aaKnown RBP11.54□□□□□ -0.56
SQSTM1-204ENST00000453046 C6orf226Q5I0X4 101 aa11.54□□□□□ -0.56
SQSTM1-204ENST00000453046 DPH3Q96FX2 82 aa11.54□□□□□ -0.56
SQSTM1-204ENST00000453046 TP73-AS1Q9UF72 201 aa11.54□□□□□ -0.56
SQSTM1-204ENST00000453046 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.54□□□□□ -0.56
SQSTM1-204ENST00000453046 ZNF561-AS1K7EIQ3 104 aa11.53□□□□□ -0.56
SQSTM1-204ENST00000453046 HNRNPA3P51991 378 aaKnown RBP11.53□□□□□ -0.56
SQSTM1-204ENST00000453046 SCGB1D4Q6XE38 83 aa11.53□□□□□ -0.56
SQSTM1-204ENST00000453046 C2orf48Q96LS8 159 aa11.53□□□□□ -0.56
SQSTM1-204ENST00000453046 KRTAP10-4P60372 401 aaPredicted RBP11.52□□□□□ -0.57
SQSTM1-204ENST00000453046 CKS1BP61024 79 aa11.52□□□□□ -0.57
SQSTM1-204ENST00000453046 C2orf91Q6ZV80 131 aa11.52□□□□□ -0.57
SQSTM1-204ENST00000453046 HIGD1BQ9P298 99 aa11.52□□□□□ -0.57
SQSTM1-204ENST00000453046 A0A0J9YXY3 114 aa11.51□□□□□ -0.57
SQSTM1-204ENST00000453046 HIGD2BQ4VC39 106 aa11.51□□□□□ -0.57
SQSTM1-204ENST00000453046 PANO1I0J062 215 aa11.5□□□□□ -0.57
SQSTM1-204ENST00000453046 DDTP30046 118 aa11.5□□□□□ -0.57
SQSTM1-204ENST00000453046 TIMM17BO60830 172 aa11.49□□□□□ -0.57
SQSTM1-204ENST00000453046 SLPIP03973 132 aa11.49□□□□□ -0.57
SQSTM1-204ENST00000453046 LINC00587B1AMM8 73 aa11.48□□□□□ -0.57
SQSTM1-204ENST00000453046 TMEM238C9JI98 176 aa11.48□□□□□ -0.57
SQSTM1-204ENST00000453046 C2orf82Q6UX34 121 aa11.48□□□□□ -0.57
SQSTM1-204ENST00000453046 LINC00526Q96FQ7 95 aa11.47□□□□□ -0.57
SQSTM1-204ENST00000453046 CAMK2N2Q96S95 79 aa11.47□□□□□ -0.57
SQSTM1-204ENST00000453046 LRP1Q07954 4544 aaKnown RBP11.47□□□□□ -0.57
SQSTM1-204ENST00000453046 TRBV30A0A0K0K1B3 111 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms