RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 DAD1P61803 113 aa8.4□□□□□ -1.07
MSH6-204ENST00000445503 RBM3P98179 157 aaKnown RBP8.4□□□□□ -1.07
MSH6-204ENST00000445503 DEFB135Q30KP9 77 aa8.4□□□□□ -1.07
MSH6-204ENST00000445503 OXLD1Q5BKU9 147 aa8.4□□□□□ -1.07
MSH6-204ENST00000445503 LINC00482Q8N8I6 264 aa8.4□□□□□ -1.07
MSH6-204ENST00000445503 FAM240AA0A1B0GVK7 77 aa8.39□□□□□ -1.07
MSH6-204ENST00000445503 A0A1B0GX51 115 aa8.39□□□□□ -1.07
MSH6-204ENST00000445503 CSDC2Q9Y534 153 aaKnown RBP8.39□□□□□ -1.07
MSH6-204ENST00000445503 LINC00959A0A1B0GUT2 108 aa8.39□□□□□ -1.07
MSH6-204ENST00000445503 IBA57-AS1B1ANH7 110 aa8.38□□□□□ -1.07
MSH6-204ENST00000445503 NF1P21359 2839 aa8.38□□□□□ -1.07
MSH6-204ENST00000445503 CELSR2Q9HCU4 2923 aa8.38□□□□□ -1.07
MSH6-204ENST00000445503 ZNF843Q8N446 348 aa8.38□□□□□ -1.07
MSH6-204ENST00000445503 GCN1Q92616 2671 aaKnown RBP8.38□□□□□ -1.07
MSH6-204ENST00000445503 A0A096LNT2 108 aa8.38□□□□□ -1.07
MSH6-204ENST00000445503 LOC107984640A0A0U1RRK4 108 aa8.37□□□□□ -1.07
MSH6-204ENST00000445503 FAM222AQ5U5X8 452 aa8.37□□□□□ -1.07
MSH6-204ENST00000445503 FHL2Q14192 279 aa8.37□□□□□ -1.07
MSH6-204ENST00000445503 RPL28P46779 137 aaKnown RBP8.36□□□□□ -1.07
MSH6-204ENST00000445503 C9orf116Q5BN46 136 aaPredicted RBP8.36□□□□□ -1.07
MSH6-204ENST00000445503 PRO0255Q9UI72 69 aa8.36□□□□□ -1.07
MSH6-204ENST00000445503 HAMPP81172 84 aa8.36□□□□□ -1.07
MSH6-204ENST00000445503 FSHBP01225 129 aa8.36□□□□□ -1.07
MSH6-204ENST00000445503 MXRA5Q9NR99 2828 aa8.35□□□□□ -1.07
MSH6-204ENST00000445503 A0A087WVE0 104 aa8.35□□□□□ -1.07
MSH6-204ENST00000445503 A8MTW9 85 aa8.35□□□□□ -1.07
MSH6-204ENST00000445503 FAM19A5Q7Z5A7 132 aaPredicted RBP8.35□□□□□ -1.07
MSH6-204ENST00000445503 HECTD1Q9ULT8 2610 aa8.35□□□□□ -1.07
MSH6-204ENST00000445503 FAM236DA0A1B0GTK5 79 aa8.34□□□□□ -1.07
MSH6-204ENST00000445503 FAM236CP0DP71 79 aa8.34□□□□□ -1.07
MSH6-204ENST00000445503 LRRC75A-AS1Q8N1F1 130 aa8.34□□□□□ -1.07
MSH6-204ENST00000445503 A0A087WZ39 114 aa8.34□□□□□ -1.07
MSH6-204ENST00000445503 SMCR5Q8TEV8 140 aa8.34□□□□□ -1.07
MSH6-204ENST00000445503 CHCHD10Q8WYQ3 142 aaPredicted RBP8.34□□□□□ -1.07
MSH6-204ENST00000445503 IGHV3OR16-9A0A0B4J2B5 98 aa8.33□□□□□ -1.08
MSH6-204ENST00000445503 WFDC9Q8NEX5 89 aa8.33□□□□□ -1.08
MSH6-204ENST00000445503 KLK12Q9UKR0 248 aa8.33□□□□□ -1.08
MSH6-204ENST00000445503 KLK5Q9Y337 293 aaPredicted RBP8.33□□□□□ -1.08
MSH6-204ENST00000445503 hADV29S1A0JD25 119 aa8.33□□□□□ -1.08
MSH6-204ENST00000445503 UBL5Q9BZL1 73 aa8.33□□□□□ -1.08
MSH6-204ENST00000445503 IGKV2-28A0A075B6P5 120 aa8.33□□□□□ -1.08
MSH6-204ENST00000445503 IGKV2D-28P01615 120 aa8.33□□□□□ -1.08
MSH6-204ENST00000445503 CXCL5P42830 114 aa8.33□□□□□ -1.08
MSH6-204ENST00000445503 C6orf99Q4VX62 202 aa8.33□□□□□ -1.08
MSH6-204ENST00000445503 IGLV1-51P01701 117 aa8.32□□□□□ -1.08
MSH6-204ENST00000445503 C3orf22Q8N5N4 141 aa8.32□□□□□ -1.08
MSH6-204ENST00000445503 ATOX1O00244 68 aa8.32□□□□□ -1.08
MSH6-204ENST00000445503 SMR3AQ99954 134 aa8.32□□□□□ -1.08
MSH6-204ENST00000445503 RPL18AQ02543 176 aaKnown RBP8.32□□□□□ -1.08
MSH6-204ENST00000445503 REG3AQ06141 175 aa8.32□□□□□ -1.08
MSH6-204ENST00000445503 USP24Q9UPU5 2620 aa8.32□□□□□ -1.08
MSH6-204ENST00000445503 IMUPQ9GZP8 106 aa8.32□□□□□ -1.08
MSH6-204ENST00000445503 TRAV23DV6A0A075B6W5 121 aa8.31□□□□□ -1.08
MSH6-204ENST00000445503 UQCRQO14949 82 aa8.31□□□□□ -1.08
MSH6-204ENST00000445503 SPAG11BQ08648 103 aa8.31□□□□□ -1.08
MSH6-204ENST00000445503 TRBV7-7A0A0K0K1E9 115 aa8.31□□□□□ -1.08
MSH6-204ENST00000445503 LINC00846Q9NV44 126 aa8.31□□□□□ -1.08
MSH6-204ENST00000445503 XAGE1AQ9HD64 81 aa8.3□□□□□ -1.08
MSH6-204ENST00000445503 GIG44P09565 113 aaPredicted RBP8.29□□□□□ -1.08
MSH6-204ENST00000445503 Q8N3U1 123 aa8.29□□□□□ -1.08
MSH6-204ENST00000445503 DEFB121Q5J5C9 76 aa8.28□□□□□ -1.08
MSH6-204ENST00000445503 C9orf129Q5T035 196 aaKnown RBP8.28□□□□□ -1.08
MSH6-204ENST00000445503 ZNF561-AS1K7EIQ3 104 aa8.28□□□□□ -1.08
MSH6-204ENST00000445503 TMEM256-PLSCR3K7ERE1 68 aa8.28□□□□□ -1.08
MSH6-204ENST00000445503 ENHOQ6UWT2 76 aa8.28□□□□□ -1.08
MSH6-204ENST00000445503 JMJD7-PLA2G4BH0Y9G9 81 aa8.27□□□□□ -1.09
MSH6-204ENST00000445503 DSCR8Q96T75 97 aa8.27□□□□□ -1.09
MSH6-204ENST00000445503 UNQ6190/PRO20217Q6UXQ8 127 aa8.27□□□□□ -1.09
MSH6-204ENST00000445503 APOC4P55056 127 aa8.26□□□□□ -1.09
MSH6-204ENST00000445503 HIGD2BQ4VC39 106 aa8.26□□□□□ -1.09
MSH6-204ENST00000445503 Q8IZM0 81 aa8.26□□□□□ -1.09
MSH6-204ENST00000445503 C6orf223Q8N319 242 aa8.26□□□□□ -1.09
MSH6-204ENST00000445503 MPLKIPQ8TAP9 179 aa8.26□□□□□ -1.09
MSH6-204ENST00000445503 USP17L23D6RBM5 183 aa8.26□□□□□ -1.09
MSH6-204ENST00000445503 COX7CP15954 63 aa8.26□□□□□ -1.09
MSH6-204ENST00000445503 CD164L2Q6UWJ8 174 aa8.26□□□□□ -1.09
MSH6-204ENST00000445503 PLAC8L1A1L4L8 177 aa8.25□□□□□ -1.09
MSH6-204ENST00000445503 ATRQ13535 2644 aa8.25□□□□□ -1.09
MSH6-204ENST00000445503 FLNBO75369 2602 aaKnown RBP8.25□□□□□ -1.09
MSH6-204ENST00000445503 GHRHP01286 108 aa8.25□□□□□ -1.09
MSH6-204ENST00000445503 TMEM258P61165 79 aa8.25□□□□□ -1.09
MSH6-204ENST00000445503 PRB2P02812 416 aaPredicted RBP8.25□□□□□ -1.09
MSH6-204ENST00000445503 IL17DQ8TAD2 202 aa8.25□□□□□ -1.09
MSH6-204ENST00000445503 IGHV4-28A0A0C4DH34 117 aa8.24□□□□□ -1.09
MSH6-204ENST00000445503 SPTSSBQ8NFR3 76 aa8.24□□□□□ -1.09
MSH6-204ENST00000445503 SPART-AS1P0CW21 52 aa8.24□□□□□ -1.09
MSH6-204ENST00000445503 Q8N814 137 aa8.24□□□□□ -1.09
MSH6-204ENST00000445503 SETXQ7Z333 2677 aaKnown RBP8.23□□□□□ -1.09
MSH6-204ENST00000445503 CR1P17927 2039 aa8.23□□□□□ -1.09
MSH6-204ENST00000445503 HILS1P60008 231 aa8.23□□□□□ -1.09
MSH6-204ENST00000445503 SCXQ7RTU7 201 aa8.23□□□□□ -1.09
MSH6-204ENST00000445503 C9orf66Q5T8R8 295 aa8.23□□□□□ -1.09
MSH6-204ENST00000445503 CAMK2N2Q96S95 79 aa8.23□□□□□ -1.09
MSH6-204ENST00000445503 Q6ZQY7 126 aa8.22□□□□□ -1.09
MSH6-204ENST00000445503 CSMD2Q7Z408 3487 aa8.22□□□□□ -1.09
MSH6-204ENST00000445503 ZFHX3Q15911 3703 aa8.22□□□□□ -1.09
MSH6-204ENST00000445503 CYSRT1A8MQ03 144 aa8.21□□□□□ -1.09
MSH6-204ENST00000445503 FAM19A3Q7Z5A8 133 aa8.21□□□□□ -1.09
MSH6-204ENST00000445503 C20orf197Q8N268 126 aa8.21□□□□□ -1.09
MSH6-204ENST00000445503 DEFB105AQ8NG35 78 aa8.21□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms