RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.01□□□□□ -1.13
LINC00339-204ENST00000434233 A0A1B0GVY2 172 aa8.01□□□□□ -1.13
LINC00339-204ENST00000434233 NDUFA1O15239 70 aa8.01□□□□□ -1.13
LINC00339-204ENST00000434233 CKS1BP61024 79 aa8.01□□□□□ -1.13
LINC00339-204ENST00000434233 RNF151Q2KHN1 245 aa8.01□□□□□ -1.13
LINC00339-204ENST00000434233 CDPF1Q6NVV7 123 aa8□□□□□ -1.13
LINC00339-204ENST00000434233 UNQ6190/PRO20217Q6UXQ8 127 aa8□□□□□ -1.13
LINC00339-204ENST00000434233 C9orf163Q8N9P6 203 aa8□□□□□ -1.13
LINC00339-204ENST00000434233 TRBV30A0A0K0K1B3 111 aa7.99□□□□□ -1.13
LINC00339-204ENST00000434233 J3QQQ9 107 aa7.99□□□□□ -1.13
LINC00339-204ENST00000434233 KRTAP10-2P60368 255 aa7.99□□□□□ -1.13
LINC00339-204ENST00000434233 RYR3Q15413 4870 aa7.99□□□□□ -1.13
LINC00339-204ENST00000434233 PYY3Q5JQD4 70 aa7.99□□□□□ -1.13
LINC00339-204ENST00000434233 SFTA2Q6UW10 78 aa7.99□□□□□ -1.13
LINC00339-204ENST00000434233 C2orf82Q6UX34 121 aa7.99□□□□□ -1.13
LINC00339-204ENST00000434233 Q6ZRU5 148 aa7.99□□□□□ -1.13
LINC00339-204ENST00000434233 SVIPQ8NHG7 77 aa7.99□□□□□ -1.13
LINC00339-204ENST00000434233 CARD19Q96LW7 228 aa7.99□□□□□ -1.13
LINC00339-204ENST00000434233 IGLV5-52A0A0A0MRZ9 124 aa7.98□□□□□ -1.13
LINC00339-204ENST00000434233 LOC105371267A0A1B0GV96 52 aa7.98□□□□□ -1.13
LINC00339-204ENST00000434233 HSBP1L1C9JCN9 74 aa7.98□□□□□ -1.13
LINC00339-204ENST00000434233 EIF4EBP3O60516 100 aaPredicted RBP7.98□□□□□ -1.13
LINC00339-204ENST00000434233 NMUP48645 174 aa7.98□□□□□ -1.13
LINC00339-204ENST00000434233 ANKRD39Q53RE8 183 aa7.98□□□□□ -1.13
LINC00339-204ENST00000434233 C10orf25Q5T742 122 aa7.98□□□□□ -1.13
LINC00339-204ENST00000434233 FAT2Q9NYQ8 4349 aa7.97□□□□□ -1.13
LINC00339-204ENST00000434233 LGALS3P17931 250 aaKnown RBP7.97□□□□□ -1.13
LINC00339-204ENST00000434233 ZNF625Q96I27 306 aaPredicted RBP7.97□□□□□ -1.13
LINC00339-204ENST00000434233 C6orf48Q9UBA6 75 aa7.97□□□□□ -1.13
LINC00339-204ENST00000434233 IGKV2D-26A0A0A0MRZ7 120 aa7.96□□□□□ -1.14
LINC00339-204ENST00000434233 MYMXA0A1B0GTQ4 84 aa7.96□□□□□ -1.14
LINC00339-204ENST00000434233 TSPEAR-AS2P59090 65 aa7.96□□□□□ -1.14
LINC00339-204ENST00000434233 MAJINQ3KP22 176 aa7.96□□□□□ -1.14
LINC00339-204ENST00000434233 NDUFA12Q9UI09 145 aa7.96□□□□□ -1.14
LINC00339-204ENST00000434233 GCSHP23434 173 aa7.95□□□□□ -1.14
LINC00339-204ENST00000434233 FUSP35637 526 aaKnown RBP eCLIP7.95□□□□□ -1.14
LINC00339-204ENST00000434233 HERV-K104P63124 156 aa7.95□□□□□ -1.14
LINC00339-204ENST00000434233 PKIGQ9Y2B9 76 aa7.95□□□□□ -1.14
LINC00339-204ENST00000434233 DNAH11Q96DT5 4516 aa7.94□□□□□ -1.14
LINC00339-204ENST00000434233 LINC00587B1AMM8 73 aa7.94□□□□□ -1.14
LINC00339-204ENST00000434233 TLX1NBP0CAT3 122 aa7.94□□□□□ -1.14
LINC00339-204ENST00000434233 SDIM1Q6ZPB5 146 aa7.94□□□□□ -1.14
LINC00339-204ENST00000434233 LOC107984640A0A0U1RRK4 108 aa7.93□□□□□ -1.14
LINC00339-204ENST00000434233 COX17Q14061 63 aa7.93□□□□□ -1.14
LINC00339-204ENST00000434233 C9orf116Q5BN46 136 aaPredicted RBP7.93□□□□□ -1.14
LINC00339-204ENST00000434233 VAMP8Q9BV40 100 aa7.93□□□□□ -1.14
LINC00339-204ENST00000434233 PKD1P98161 4303 aa7.92□□□□□ -1.14
LINC00339-204ENST00000434233 ZNF815PA8K554 130 aa7.91□□□□□ -1.14
LINC00339-204ENST00000434233 NDUFC2-KCTD14E9PQ53 114 aa7.91□□□□□ -1.14
LINC00339-204ENST00000434233 LINC01620Q4KN68 170 aa7.91□□□□□ -1.14
LINC00339-204ENST00000434233 SPATA45Q537H7 98 aa7.91□□□□□ -1.14
LINC00339-204ENST00000434233 ERG28Q9UKR5 140 aa7.91□□□□□ -1.14
LINC00339-204ENST00000434233 PAM16Q9Y3D7 125 aa7.91□□□□□ -1.14
LINC00339-204ENST00000434233 A0A0J9YXY3 114 aa7.9□□□□□ -1.14
LINC00339-204ENST00000434233 C16orf90A8MZG2 172 aa7.9□□□□□ -1.14
LINC00339-204ENST00000434233 SMCPP49901 116 aaPredicted RBP7.9□□□□□ -1.14
LINC00339-204ENST00000434233 S100A12P80511 92 aa7.9□□□□□ -1.14
LINC00339-204ENST00000434233 PCP2Q8IVA1 136 aa7.9□□□□□ -1.14
LINC00339-204ENST00000434233 TTTY13Q9BZ97 58 aa7.9□□□□□ -1.14
LINC00339-204ENST00000434233 SMIM6P0DI80 62 aa7.89□□□□□ -1.15
LINC00339-204ENST00000434233 COX8AP10176 69 aa7.89□□□□□ -1.15
LINC00339-204ENST00000434233 PFN2P35080 140 aa7.89□□□□□ -1.15
LINC00339-204ENST00000434233 KRTAP10-1P60331 282 aa7.89□□□□□ -1.15
LINC00339-204ENST00000434233 CIRBPQ14011 172 aaKnown RBP7.89□□□□□ -1.15
LINC00339-204ENST00000434233 MEIG1Q5JSS6 88 aa7.89□□□□□ -1.15
LINC00339-204ENST00000434233 Q6ZRP5 223 aa7.89□□□□□ -1.15
LINC00339-204ENST00000434233 HECTD4Q9Y4D8 3996 aa7.88□□□□□ -1.15
LINC00339-204ENST00000434233 DLEU1O43261 78 aa7.88□□□□□ -1.15
LINC00339-204ENST00000434233 SMIM13P0DJ93 91 aa7.88□□□□□ -1.15
LINC00339-204ENST00000434233 PTTG1IPP53801 180 aa7.88□□□□□ -1.15
LINC00339-204ENST00000434233 LINC00158P58513 81 aa7.88□□□□□ -1.15
LINC00339-204ENST00000434233 RPL18AQ02543 176 aaKnown RBP7.88□□□□□ -1.15
LINC00339-204ENST00000434233 GAGE2BQ13066 116 aa7.88□□□□□ -1.15
LINC00339-204ENST00000434233 BOD1L2Q8IYS8 172 aa7.88□□□□□ -1.15
LINC00339-204ENST00000434233 LINC00474Q9P2X8 69 aa7.88□□□□□ -1.15
LINC00339-204ENST00000434233 DNAH5Q8TE73 4624 aa7.87□□□□□ -1.15
LINC00339-204ENST00000434233 A0A096LNI7 61 aa7.87□□□□□ -1.15
LINC00339-204ENST00000434233 TIMM17BO60830 172 aa7.87□□□□□ -1.15
LINC00339-204ENST00000434233 GAGE2EQ4V326 116 aa7.87□□□□□ -1.15
LINC00339-204ENST00000434233 GAGE2DQ9UEU5 116 aa7.87□□□□□ -1.15
LINC00339-204ENST00000434233 SCGB1D4Q6XE38 83 aa7.86□□□□□ -1.15
LINC00339-204ENST00000434233 C14orf144Q96I85 54 aa7.86□□□□□ -1.15
LINC00339-204ENST00000434233 A0A0U1RRA0 63 aa7.85□□□□□ -1.15
LINC00339-204ENST00000434233 Q6ZSA8 131 aa7.85□□□□□ -1.15
LINC00339-204ENST00000434233 IGKV2-24A0A0C4DH68 120 aa7.84□□□□□ -1.15
LINC00339-204ENST00000434233 SLC25A34Q6PIV7 304 aa7.84□□□□□ -1.15
LINC00339-204ENST00000434233 MIR7-3HGQ8N6C7 128 aa7.84□□□□□ -1.15
LINC00339-204ENST00000434233 DPH3Q96FX2 82 aa7.84□□□□□ -1.15
LINC00339-204ENST00000434233 LITAFQ99732 161 aa7.84□□□□□ -1.15
LINC00339-204ENST00000434233 SND1-IT1Q9HBX3 110 aa7.84□□□□□ -1.15
LINC00339-204ENST00000434233 FAM30AQ9NZY2 134 aa7.84□□□□□ -1.15
LINC00339-204ENST00000434233 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.84□□□□□ -1.15
LINC00339-204ENST00000434233 LOC107984156A0A0G2JMH3 177 aa7.83□□□□□ -1.16
LINC00339-204ENST00000434233 TMEM238C9JI98 176 aa7.83□□□□□ -1.16
LINC00339-204ENST00000434233 PANO1I0J062 215 aa7.83□□□□□ -1.16
LINC00339-204ENST00000434233 CHTF8P0CG12 524 aa7.83□□□□□ -1.16
LINC00339-204ENST00000434233 C9orf129Q5T035 196 aaKnown RBP7.83□□□□□ -1.16
LINC00339-204ENST00000434233 ADAMTSL4-AS1Q5T5F5 129 aa7.83□□□□□ -1.16
LINC00339-204ENST00000434233 ARL17AQ8IVW1 177 aa7.83□□□□□ -1.16
LINC00339-204ENST00000434233 SPACA4Q8TDM5 124 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 146.4 ms