RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 SPINK8P0C7L1 97 aa11.79□□□□□ -0.52
SHH-202ENST00000430104 RPL37AP61513 92 aaKnown RBP11.79□□□□□ -0.52
SHH-202ENST00000430104 Q8IZM0 81 aa11.79□□□□□ -0.52
SHH-202ENST00000430104 IGLV5-45A0A087WSX0 123 aa11.78□□□□□ -0.52
SHH-202ENST00000430104 SMIM1B2RUZ4 78 aa11.78□□□□□ -0.52
SHH-202ENST00000430104 SERF1AO75920 110 aa11.78□□□□□ -0.52
SHH-202ENST00000430104 IGLC3P0DOY3 106 aa11.77□□□□□ -0.53
SHH-202ENST00000430104 C9orf116Q5BN46 136 aaPredicted RBP11.77□□□□□ -0.53
SHH-202ENST00000430104 IFI27L1Q96BM0 104 aa11.77□□□□□ -0.53
SHH-202ENST00000430104 TRBV30A0A0K0K1B3 111 aa11.76□□□□□ -0.53
SHH-202ENST00000430104 H3BRM9 83 aa11.76□□□□□ -0.53
SHH-202ENST00000430104 GAGE2EQ4V326 116 aa11.76□□□□□ -0.53
SHH-202ENST00000430104 GAGE2DQ9UEU5 116 aa11.76□□□□□ -0.53
SHH-202ENST00000430104 LINC00310P59036 64 aa11.75□□□□□ -0.53
SHH-202ENST00000430104 COX7B2Q8TF08 81 aa11.75□□□□□ -0.53
SHH-202ENST00000430104 CHTOPQ9Y3Y2 248 aaKnown RBP11.75□□□□□ -0.53
SHH-202ENST00000430104 VPS13BQ7Z7G8 4022 aa11.74□□□□□ -0.53
SHH-202ENST00000430104 NUPR1O60356 82 aa11.74□□□□□ -0.53
SHH-202ENST00000430104 ZNF22P17026 224 aaPredicted RBP11.74□□□□□ -0.53
SHH-202ENST00000430104 Q6ZRP5 223 aa11.74□□□□□ -0.53
SHH-202ENST00000430104 C7orf33Q8WU49 177 aa11.74□□□□□ -0.53
SHH-202ENST00000430104 A0A1W2PNN7 141 aa11.73□□□□□ -0.53
SHH-202ENST00000430104 TLX1NBP0CAT3 122 aa11.73□□□□□ -0.53
SHH-202ENST00000430104 KRTAP10-4P60372 401 aaPredicted RBP11.73□□□□□ -0.53
SHH-202ENST00000430104 C11orf86A6NJI1 115 aa11.72□□□□□ -0.53
SHH-202ENST00000430104 H0Y8G0 127 aa11.72□□□□□ -0.53
SHH-202ENST00000430104 TMEM170BQ5T4T1 132 aa11.72□□□□□ -0.53
SHH-202ENST00000430104 F8VRH5 84 aa11.71□□□□□ -0.53
SHH-202ENST00000430104 LEPROTL1O95214 131 aa11.71□□□□□ -0.53
SHH-202ENST00000430104 FABP4P15090 132 aa11.71□□□□□ -0.53
SHH-202ENST00000430104 SRRM2Q9UQ35 2752 aaKnown RBP11.7□□□□□ -0.54
SHH-202ENST00000430104 NDUFC2-KCTD14E9PQ53 114 aa11.7□□□□□ -0.54
SHH-202ENST00000430104 CXCL5P42830 114 aa11.7□□□□□ -0.54
SHH-202ENST00000430104 TRAV12-1A0A0B4J245 112 aa11.69□□□□□ -0.54
SHH-202ENST00000430104 FAM168BA1KXE4 195 aa11.69□□□□□ -0.54
SHH-202ENST00000430104 HIST1H2BKO60814 126 aa11.68□□□□□ -0.54
SHH-202ENST00000430104 HIST1H2BJP06899 126 aa11.68□□□□□ -0.54
SHH-202ENST00000430104 HIST1H2BOP23527 126 aa11.68□□□□□ -0.54
SHH-202ENST00000430104 HIST1H2BBP33778 126 aa11.68□□□□□ -0.54
SHH-202ENST00000430104 HIST1H2BDP58876 126 aa11.68□□□□□ -0.54
SHH-202ENST00000430104 HIST1H2BCP62807 126 aa11.68□□□□□ -0.54
SHH-202ENST00000430104 HIST2H2BEQ16778 126 aa11.68□□□□□ -0.54
SHH-202ENST00000430104 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.68□□□□□ -0.54
SHH-202ENST00000430104 HIST1H2BHQ93079 126 aa11.68□□□□□ -0.54
SHH-202ENST00000430104 HIST1H2BNQ99877 126 aa11.68□□□□□ -0.54
SHH-202ENST00000430104 HIST1H2BMQ99879 126 aa11.68□□□□□ -0.54
SHH-202ENST00000430104 FAM19A5Q7Z5A7 132 aaPredicted RBP11.67□□□□□ -0.54
SHH-202ENST00000430104 IGLV5-39A0A0G2JS06 123 aa11.66□□□□□ -0.54
SHH-202ENST00000430104 PHF5AQ7RTV0 110 aaKnown RBP11.66□□□□□ -0.54
SHH-202ENST00000430104 HSPB8Q9UJY1 196 aa11.66□□□□□ -0.54
SHH-202ENST00000430104 HNRNPA3P51991 378 aaKnown RBP11.65□□□□□ -0.54
SHH-202ENST00000430104 C9orf129Q5T035 196 aaKnown RBP11.65□□□□□ -0.54
SHH-202ENST00000430104 ATP6V1G1O75348 118 aa11.64□□□□□ -0.55
SHH-202ENST00000430104 S100A1P23297 94 aa11.64□□□□□ -0.55
SHH-202ENST00000430104 XAGE1AQ9HD64 81 aa11.64□□□□□ -0.55
SHH-202ENST00000430104 ODF1Q14990 250 aa11.63□□□□□ -0.55
SHH-202ENST00000430104 TMEM223A0PJW6 202 aa11.62□□□□□ -0.55
SHH-202ENST00000430104 FLG2Q5D862 2391 aaPredicted RBP11.62□□□□□ -0.55
SHH-202ENST00000430104 PRR3P79522 188 aaKnown RBP11.61□□□□□ -0.55
SHH-202ENST00000430104 ZNF625Q96I27 306 aaPredicted RBP11.61□□□□□ -0.55
SHH-202ENST00000430104 PFN2P35080 140 aa11.6□□□□□ -0.55
SHH-202ENST00000430104 KRTAP7-1Q8IUC3 87 aa11.6□□□□□ -0.55
SHH-202ENST00000430104 PMCHL2Q9BQD1 86 aa11.6□□□□□ -0.55
SHH-202ENST00000430104 M0QXV9 152 aa11.59□□□□□ -0.55
SHH-202ENST00000430104 MAP1LC3CQ9BXW4 147 aa11.59□□□□□ -0.55
SHH-202ENST00000430104 SERTAD4-AS1Q5TG53 156 aa11.57□□□□□ -0.56
SHH-202ENST00000430104 DPM2O94777 84 aa11.56□□□□□ -0.56
SHH-202ENST00000430104 PSORS1C2Q9UIG4 136 aa11.56□□□□□ -0.56
SHH-202ENST00000430104 ERG28Q9UKR5 140 aa11.56□□□□□ -0.56
SHH-202ENST00000430104 PLNP26678 52 aa11.55□□□□□ -0.56
SHH-202ENST00000430104 UBE2BP63146 152 aa11.55□□□□□ -0.56
SHH-202ENST00000430104 J3QL48 77 aa11.54□□□□□ -0.56
SHH-202ENST00000430104 IGKCP01834 107 aa11.54□□□□□ -0.56
SHH-202ENST00000430104 KRTAP11-1Q8IUC1 163 aa11.54□□□□□ -0.56
SHH-202ENST00000430104 C1orf137Q5JT78 98 aa11.53□□□□□ -0.56
SHH-202ENST00000430104 C22orf24Q9Y442 160 aa11.53□□□□□ -0.56
SHH-202ENST00000430104 PKHD1L1Q86WI1 4243 aa11.52□□□□□ -0.56
SHH-202ENST00000430104 A0A0U1RRA0 63 aa11.52□□□□□ -0.57
SHH-202ENST00000430104 SFTA2Q6UW10 78 aa11.52□□□□□ -0.57
SHH-202ENST00000430104 SYS1-DBNDD2H3BUS1 97 aa11.51□□□□□ -0.57
SHH-202ENST00000430104 LINC00158P58513 81 aa11.51□□□□□ -0.57
SHH-202ENST00000430104 COA6Q5JTJ3 125 aaKnown RBP11.51□□□□□ -0.57
SHH-202ENST00000430104 KRTAP29-1A8MX34 341 aaPredicted RBP11.5□□□□□ -0.57
SHH-202ENST00000430104 HERVK_113P61574 105 aa11.5□□□□□ -0.57
SHH-202ENST00000430104 COX17Q14061 63 aa11.5□□□□□ -0.57
SHH-202ENST00000430104 LEPROTO15243 131 aa11.49□□□□□ -0.57
SHH-202ENST00000430104 SND1-IT1Q9HBX3 110 aa11.49□□□□□ -0.57
SHH-202ENST00000430104 NDUFA12Q9UI09 145 aa11.49□□□□□ -0.57
SHH-202ENST00000430104 TSPEAR-AS2P59090 65 aa11.48□□□□□ -0.57
SHH-202ENST00000430104 LBHQ53QV2 105 aaPredicted RBP11.48□□□□□ -0.57
SHH-202ENST00000430104 MEIG1Q5JSS6 88 aa11.48□□□□□ -0.57
SHH-202ENST00000430104 PLEKHB2Q96CS7 222 aa11.48□□□□□ -0.57
SHH-202ENST00000430104 OXTP01178 125 aa11.47□□□□□ -0.57
SHH-202ENST00000430104 SMIM13P0DJ93 91 aa11.47□□□□□ -0.57
SHH-202ENST00000430104 SPINK6Q6UWN8 80 aa11.47□□□□□ -0.57
SHH-202ENST00000430104 MRPL55Q7Z7F7 128 aaKnown RBP11.47□□□□□ -0.57
SHH-202ENST00000430104 PLA2G2DQ9UNK4 145 aa11.47□□□□□ -0.57
SHH-202ENST00000430104 MYCBP2O75592 4640 aa11.47□□□□□ -0.57
SHH-202ENST00000430104 MYMXA0A1B0GTQ4 84 aa11.46□□□□□ -0.57
SHH-202ENST00000430104 GAGE10A6NGK3 116 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms