RNA–Protein interactions for RNA: ENST00000395761.3

CXCL1-201, Transcript of C-X-C motif chemokine ligand 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CXCL1, Length 1,097 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1-201ENST00000395761 TMEM170BQ5T4T1 132 aa10.63□□□□□ -0.71
CXCL1-201ENST00000395761 KRTAP4-5Q9BYR2 181 aa10.63□□□□□ -0.71
CXCL1-201ENST00000395761 IGHV3-64A0A075B6Q5 118 aa10.62□□□□□ -0.71
CXCL1-201ENST00000395761 PANO1I0J062 215 aa10.62□□□□□ -0.71
CXCL1-201ENST00000395761 SMR3BP02814 79 aaPredicted RBP10.62□□□□□ -0.71
CXCL1-201ENST00000395761 ORAOV1Q8WV07 137 aa10.62□□□□□ -0.71
CXCL1-201ENST00000395761 TMEM223A0PJW6 202 aa10.61□□□□□ -0.71
CXCL1-201ENST00000395761 SYCNQ0VAF6 134 aa10.61□□□□□ -0.71
CXCL1-201ENST00000395761 JOSD1Q15040 202 aaPredicted RBP10.61□□□□□ -0.71
CXCL1-201ENST00000395761 SCXQ7RTU7 201 aa10.61□□□□□ -0.71
CXCL1-201ENST00000395761 Q8N1X5 172 aa10.61□□□□□ -0.71
CXCL1-201ENST00000395761 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.61□□□□□ -0.71
CXCL1-201ENST00000395761 SMIM1B2RUZ4 78 aa10.6□□□□□ -0.71
CXCL1-201ENST00000395761 SPAG11BQ08648 103 aa10.6□□□□□ -0.71
CXCL1-201ENST00000395761 CARD19Q96LW7 228 aa10.6□□□□□ -0.71
CXCL1-201ENST00000395761 IGLV5-39A0A0G2JS06 123 aa10.59□□□□□ -0.71
CXCL1-201ENST00000395761 SCGB1D1O95968 90 aa10.59□□□□□ -0.71
CXCL1-201ENST00000395761 Q6ZRU5 148 aa10.59□□□□□ -0.71
CXCL1-201ENST00000395761 SPINK8P0C7L1 97 aa10.58□□□□□ -0.72
CXCL1-201ENST00000395761 CHTF8P0CG12 524 aa10.58□□□□□ -0.72
CXCL1-201ENST00000395761 CIRBP-AS1Q8TBR5 109 aa10.58□□□□□ -0.72
CXCL1-201ENST00000395761 C2orf48Q96LS8 159 aa10.58□□□□□ -0.72
CXCL1-201ENST00000395761 CAMK2N2Q96S95 79 aa10.58□□□□□ -0.72
CXCL1-201ENST00000395761 LOC105371267A0A1B0GV96 52 aa10.57□□□□□ -0.72
CXCL1-201ENST00000395761 KIAA0087Q14695 138 aa10.57□□□□□ -0.72
CXCL1-201ENST00000395761 FAT1Q14517 4588 aa10.57□□□□□ -0.72
CXCL1-201ENST00000395761 Q8IZM0 81 aa10.56□□□□□ -0.72
CXCL1-201ENST00000395761 F8WDY8 70 aa10.55□□□□□ -0.72
CXCL1-201ENST00000395761 HERVK_113P61574 105 aa10.55□□□□□ -0.72
CXCL1-201ENST00000395761 CIRBPQ14011 172 aaKnown RBP10.55□□□□□ -0.72
CXCL1-201ENST00000395761 PYY3Q5JQD4 70 aa10.55□□□□□ -0.72
CXCL1-201ENST00000395761 C10orf25Q5T742 122 aa10.55□□□□□ -0.72
CXCL1-201ENST00000395761 IGKV2-24A0A0C4DH68 120 aa10.54□□□□□ -0.72
CXCL1-201ENST00000395761 E9PLD3 99 aa10.54□□□□□ -0.72
CXCL1-201ENST00000395761 UNQ6190/PRO20217Q6UXQ8 127 aa10.54□□□□□ -0.72
CXCL1-201ENST00000395761 ATOH7Q8N100 152 aa10.54□□□□□ -0.72
CXCL1-201ENST00000395761 STPG4Q8N801 248 aa10.54□□□□□ -0.72
CXCL1-201ENST00000395761 A0A096LNI7 61 aa10.53□□□□□ -0.72
CXCL1-201ENST00000395761 LEPROTO15243 131 aa10.53□□□□□ -0.72
CXCL1-201ENST00000395761 C6orf226Q5I0X4 101 aa10.53□□□□□ -0.72
CXCL1-201ENST00000395761 SPACA4Q8TDM5 124 aa10.53□□□□□ -0.72
CXCL1-201ENST00000395761 COX7B2Q8TF08 81 aa10.53□□□□□ -0.72
CXCL1-201ENST00000395761 PLEKHB2Q96CS7 222 aa10.53□□□□□ -0.72
CXCL1-201ENST00000395761 DPH3Q96FX2 82 aa10.53□□□□□ -0.72
CXCL1-201ENST00000395761 ABCA13Q86UQ4 5058 aa10.52□□□□□ -0.72
CXCL1-201ENST00000395761 EPM2AB3EWF7 344 aa10.52□□□□□ -0.73
CXCL1-201ENST00000395761 NDUFA1O15239 70 aa10.52□□□□□ -0.73
CXCL1-201ENST00000395761 PRSS2P07478 247 aa10.52□□□□□ -0.73
CXCL1-201ENST00000395761 Q5VSD8 79 aa10.52□□□□□ -0.73
CXCL1-201ENST00000395761 C2orf82Q6UX34 121 aa10.52□□□□□ -0.73
CXCL1-201ENST00000395761 TOMM7Q9P0U1 55 aa10.52□□□□□ -0.73
CXCL1-201ENST00000395761 CXCL5P42830 114 aa10.51□□□□□ -0.73
CXCL1-201ENST00000395761 MAJINQ3KP22 176 aa10.51□□□□□ -0.73
CXCL1-201ENST00000395761 C6orf48Q9UBA6 75 aa10.51□□□□□ -0.73
CXCL1-201ENST00000395761 A0A087WYN8 130 aa10.5□□□□□ -0.73
CXCL1-201ENST00000395761 LOC107984640A0A0U1RRK4 108 aa10.5□□□□□ -0.73
CXCL1-201ENST00000395761 RNF151Q2KHN1 245 aa10.5□□□□□ -0.73
CXCL1-201ENST00000395761 LINC00528Q8N1L1 170 aa10.5□□□□□ -0.73
CXCL1-201ENST00000395761 HSBP1L1C9JCN9 74 aa10.49□□□□□ -0.73
CXCL1-201ENST00000395761 GAGE2BQ13066 116 aa10.49□□□□□ -0.73
CXCL1-201ENST00000395761 ANKRD39Q53RE8 183 aa10.49□□□□□ -0.73
CXCL1-201ENST00000395761 FAM229AH3BQW9 127 aa10.48□□□□□ -0.73
CXCL1-201ENST00000395761 J3QQQ9 107 aa10.48□□□□□ -0.73
CXCL1-201ENST00000395761 PTTG1IPP53801 180 aa10.48□□□□□ -0.73
CXCL1-201ENST00000395761 SFTA2Q6UW10 78 aa10.48□□□□□ -0.73
CXCL1-201ENST00000395761 VPS13BQ7Z7G8 4022 aa10.48□□□□□ -0.73
CXCL1-201ENST00000395761 IGKV2D-26A0A0A0MRZ7 120 aa10.47□□□□□ -0.73
CXCL1-201ENST00000395761 TSPEAR-AS2P59090 65 aa10.47□□□□□ -0.73
CXCL1-201ENST00000395761 CKS1BP61024 79 aa10.47□□□□□ -0.73
CXCL1-201ENST00000395761 ZNF625Q96I27 306 aaPredicted RBP10.47□□□□□ -0.73
CXCL1-201ENST00000395761 PKIGQ9Y2B9 76 aa10.47□□□□□ -0.73
CXCL1-201ENST00000395761 PCLOQ9Y6V0 5065 aa10.46□□□□□ -0.73
CXCL1-201ENST00000395761 NMUP48645 174 aa10.46□□□□□ -0.73
CXCL1-201ENST00000395761 RPL18AQ02543 176 aaKnown RBP10.46□□□□□ -0.73
CXCL1-201ENST00000395761 C9orf116Q5BN46 136 aaPredicted RBP10.46□□□□□ -0.73
CXCL1-201ENST00000395761 PLAC8Q9NZF1 115 aa10.46□□□□□ -0.73
CXCL1-201ENST00000395761 TRBV30A0A0K0K1B3 111 aa10.45□□□□□ -0.74
CXCL1-201ENST00000395761 LGALS3P17931 250 aaKnown RBP10.45□□□□□ -0.74
CXCL1-201ENST00000395761 LINC00474Q9P2X8 69 aa10.45□□□□□ -0.74
CXCL1-201ENST00000395761 NDUFA12Q9UI09 145 aa10.45□□□□□ -0.74
CXCL1-201ENST00000395761 SRRM2Q9UQ35 2752 aaKnown RBP10.44□□□□□ -0.74
CXCL1-201ENST00000395761 MYMXA0A1B0GTQ4 84 aa10.44□□□□□ -0.74
CXCL1-201ENST00000395761 HERV-K104P63124 156 aa10.44□□□□□ -0.74
CXCL1-201ENST00000395761 VAMP8Q9BV40 100 aa10.44□□□□□ -0.74
CXCL1-201ENST00000395761 TLX1NBP0CAT3 122 aa10.43□□□□□ -0.74
CXCL1-201ENST00000395761 SMIM6P0DI80 62 aa10.43□□□□□ -0.74
CXCL1-201ENST00000395761 Q6ZRP5 223 aa10.43□□□□□ -0.74
CXCL1-201ENST00000395761 A0A1W2PNN7 141 aa10.41□□□□□ -0.74
CXCL1-201ENST00000395761 PLA2G1BP04054 148 aaKnown RBP10.41□□□□□ -0.74
CXCL1-201ENST00000395761 KRTAP10-4P60372 401 aaPredicted RBP10.41□□□□□ -0.74
CXCL1-201ENST00000395761 GAGE2EQ4V326 116 aa10.41□□□□□ -0.74
CXCL1-201ENST00000395761 SPATA45Q537H7 98 aa10.41□□□□□ -0.74
CXCL1-201ENST00000395761 GAGE2DQ9UEU5 116 aa10.41□□□□□ -0.74
CXCL1-201ENST00000395761 PAM16Q9Y3D7 125 aa10.41□□□□□ -0.74
CXCL1-201ENST00000395761 S100A12P80511 92 aa10.4□□□□□ -0.74
CXCL1-201ENST00000395761 ZNF815PA8K554 130 aa10.39□□□□□ -0.75
CXCL1-201ENST00000395761 LINC00587B1AMM8 73 aa10.39□□□□□ -0.75
CXCL1-201ENST00000395761 NDUFC2-KCTD14E9PQ53 114 aa10.39□□□□□ -0.75
CXCL1-201ENST00000395761 INAFM2P0DMQ5 153 aa10.39□□□□□ -0.75
CXCL1-201ENST00000395761 COX17Q14061 63 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 133.5 ms