RNA–Protein interactions for RNA: ENST00000378725.3

SSU72-203, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-203ENST00000378725 C6orf48Q9UBA6 75 aa11.96□□□□□ -0.49
SSU72-203ENST00000378725 RYR1P21817 5038 aa11.95□□□□□ -0.5
SSU72-203ENST00000378725 LOC107984640A0A0U1RRK4 108 aa11.95□□□□□ -0.5
SSU72-203ENST00000378725 HAMPP81172 84 aa11.95□□□□□ -0.5
SSU72-203ENST00000378725 TMEM170BQ5T4T1 132 aa11.95□□□□□ -0.5
SSU72-203ENST00000378725 SCXQ7RTU7 201 aa11.95□□□□□ -0.5
SSU72-203ENST00000378725 COX7B2Q8TF08 81 aa11.95□□□□□ -0.5
SSU72-203ENST00000378725 MAP1LC3CQ9BXW4 147 aa11.95□□□□□ -0.5
SSU72-203ENST00000378725 TRBV30A0A0K0K1B3 111 aa11.94□□□□□ -0.5
SSU72-203ENST00000378725 H0Y8G0 127 aa11.94□□□□□ -0.5
SSU72-203ENST00000378725 CKS1BP61024 79 aa11.94□□□□□ -0.5
SSU72-203ENST00000378725 CIRBP-AS1Q8TBR5 109 aa11.94□□□□□ -0.5
SSU72-203ENST00000378725 SPACA4Q8TDM5 124 aa11.94□□□□□ -0.5
SSU72-203ENST00000378725 A0A096LNI7 61 aa11.93□□□□□ -0.5
SSU72-203ENST00000378725 TLX1NBP0CAT3 122 aa11.93□□□□□ -0.5
SSU72-203ENST00000378725 CHTF8P0CG12 524 aa11.93□□□□□ -0.5
SSU72-203ENST00000378725 CXCL5P42830 114 aa11.93□□□□□ -0.5
SSU72-203ENST00000378725 TMEM223A0PJW6 202 aa11.92□□□□□ -0.5
SSU72-203ENST00000378725 LINC00474Q9P2X8 69 aa11.92□□□□□ -0.5
SSU72-203ENST00000378725 PTTG1IPP53801 180 aa11.91□□□□□ -0.5
SSU72-203ENST00000378725 HSPG2P98160 4391 aa11.9□□□□□ -0.5
SSU72-203ENST00000378725 IGKV2-24A0A0C4DH68 120 aa11.9□□□□□ -0.5
SSU72-203ENST00000378725 SYS1-DBNDD2H3BUS1 97 aa11.9□□□□□ -0.5
SSU72-203ENST00000378725 PLNP26678 52 aa11.9□□□□□ -0.5
SSU72-203ENST00000378725 Q8N1X5 172 aa11.9□□□□□ -0.5
SSU72-203ENST00000378725 HERC2O95714 4834 aa11.9□□□□□ -0.51
SSU72-203ENST00000378725 GAGE2BQ13066 116 aa11.89□□□□□ -0.51
SSU72-203ENST00000378725 MAJINQ3KP22 176 aa11.89□□□□□ -0.51
SSU72-203ENST00000378725 DPH3Q96FX2 82 aa11.89□□□□□ -0.51
SSU72-203ENST00000378725 A0A087WYN8 130 aa11.88□□□□□ -0.51
SSU72-203ENST00000378725 DPM2O94777 84 aa11.88□□□□□ -0.51
SSU72-203ENST00000378725 C9orf116Q5BN46 136 aaPredicted RBP11.88□□□□□ -0.51
SSU72-203ENST00000378725 PLAC8Q9NZF1 115 aa11.88□□□□□ -0.51
SSU72-203ENST00000378725 SMR3BP02814 79 aaPredicted RBP11.87□□□□□ -0.51
SSU72-203ENST00000378725 RPL18AQ02543 176 aaKnown RBP11.87□□□□□ -0.51
SSU72-203ENST00000378725 PET117Q6UWS5 81 aa11.87□□□□□ -0.51
SSU72-203ENST00000378725 Q6ZRP5 223 aa11.87□□□□□ -0.51
SSU72-203ENST00000378725 PMCHL2Q9BQD1 86 aa11.87□□□□□ -0.51
SSU72-203ENST00000378725 NDUFC2-KCTD14E9PQ53 114 aa11.86□□□□□ -0.51
SSU72-203ENST00000378725 IGKCP01834 107 aa11.86□□□□□ -0.51
SSU72-203ENST00000378725 C3orf79P0CE67 100 aa11.86□□□□□ -0.51
SSU72-203ENST00000378725 EPM2AB3EWF7 344 aa11.85□□□□□ -0.51
SSU72-203ENST00000378725 LINC01545Q5VT33 79 aa11.85□□□□□ -0.51
SSU72-203ENST00000378725 HIST3H2BBQ8N257 126 aa11.85□□□□□ -0.51
SSU72-203ENST00000378725 STPG4Q8N801 248 aa11.85□□□□□ -0.51
SSU72-203ENST00000378725 S100A6P06703 90 aa11.84□□□□□ -0.51
SSU72-203ENST00000378725 GAGE2EQ4V326 116 aa11.82□□□□□ -0.52
SSU72-203ENST00000378725 SFTA2Q6UW10 78 aa11.82□□□□□ -0.52
SSU72-203ENST00000378725 ZNF625Q96I27 306 aaPredicted RBP11.82□□□□□ -0.52
SSU72-203ENST00000378725 GAGE2DQ9UEU5 116 aa11.82□□□□□ -0.52
SSU72-203ENST00000378725 A0A1W2PNN7 141 aa11.81□□□□□ -0.52
SSU72-203ENST00000378725 KRTDAPP60985 99 aa11.81□□□□□ -0.52
SSU72-203ENST00000378725 LINC00528Q8N1L1 170 aa11.81□□□□□ -0.52
SSU72-203ENST00000378725 FAM229AH3BQW9 127 aa11.8□□□□□ -0.52
SSU72-203ENST00000378725 HIST1H2BLQ99880 126 aa11.8□□□□□ -0.52
SSU72-203ENST00000378725 KRTAP4-5Q9BYR2 181 aa11.8□□□□□ -0.52
SSU72-203ENST00000378725 LEPROTO15243 131 aa11.79□□□□□ -0.52
SSU72-203ENST00000378725 S100A2P29034 98 aa11.79□□□□□ -0.52
SSU72-203ENST00000378725 SNRPEP62304 92 aaKnown RBP11.79□□□□□ -0.52
SSU72-203ENST00000378725 C5orf52A6NGY3 159 aa11.78□□□□□ -0.52
SSU72-203ENST00000378725 HERVK_113P61574 105 aa11.78□□□□□ -0.52
SSU72-203ENST00000378725 C9orf129Q5T035 196 aaKnown RBP11.78□□□□□ -0.52
SSU72-203ENST00000378725 Q5VSD8 79 aa11.78□□□□□ -0.52
SSU72-203ENST00000378725 PLEKHB2Q96CS7 222 aa11.78□□□□□ -0.52
SSU72-203ENST00000378725 COX17Q14061 63 aa11.76□□□□□ -0.53
SSU72-203ENST00000378725 ERG28Q9UKR5 140 aa11.76□□□□□ -0.53
SSU72-203ENST00000378725 C20orf202A1L168 122 aa11.75□□□□□ -0.53
SSU72-203ENST00000378725 E9PLD3 99 aa11.75□□□□□ -0.53
SSU72-203ENST00000378725 TSPEAR-AS2P59090 65 aa11.75□□□□□ -0.53
SSU72-203ENST00000378725 FAM168BA1KXE4 195 aa11.74□□□□□ -0.53
SSU72-203ENST00000378725 J3QQQ9 107 aa11.74□□□□□ -0.53
SSU72-203ENST00000378725 PFN2P35080 140 aa11.74□□□□□ -0.53
SSU72-203ENST00000378725 HERV-K104P63124 156 aa11.74□□□□□ -0.53
SSU72-203ENST00000378725 KRTAP7-1Q8IUC3 87 aa11.74□□□□□ -0.53
SSU72-203ENST00000378725 NDUFA12Q9UI09 145 aa11.74□□□□□ -0.53
SSU72-203ENST00000378725 MYMXA0A1B0GTQ4 84 aa11.73□□□□□ -0.53
SSU72-203ENST00000378725 PLA2G1BP04054 148 aaKnown RBP11.73□□□□□ -0.53
SSU72-203ENST00000378725 XAGE1AQ9HD64 81 aa11.73□□□□□ -0.53
SSU72-203ENST00000378725 FAT1Q14517 4588 aa11.72□□□□□ -0.53
SSU72-203ENST00000378725 AKR1D1P51857 326 aa11.72□□□□□ -0.53
SSU72-203ENST00000378725 KRTAP10-4P60372 401 aaPredicted RBP11.72□□□□□ -0.53
SSU72-203ENST00000378725 NMUP48645 174 aa11.71□□□□□ -0.53
SSU72-203ENST00000378725 C7orf33Q8WU49 177 aa11.71□□□□□ -0.53
SSU72-203ENST00000378725 LGALS3P17931 250 aaKnown RBP11.7□□□□□ -0.54
SSU72-203ENST00000378725 LINC00587B1AMM8 73 aa11.69□□□□□ -0.54
SSU72-203ENST00000378725 RPL37AP61513 92 aaKnown RBP11.69□□□□□ -0.54
SSU72-203ENST00000378725 FAM19A5Q7Z5A7 132 aaPredicted RBP11.69□□□□□ -0.54
SSU72-203ENST00000378725 PLA2G2DQ9UNK4 145 aa11.69□□□□□ -0.54
SSU72-203ENST00000378725 LINC00158P58513 81 aa11.68□□□□□ -0.54
SSU72-203ENST00000378725 SERTAD4-AS1Q5TG53 156 aa11.68□□□□□ -0.54
SSU72-203ENST00000378725 PHF5AQ7RTV0 110 aaKnown RBP11.68□□□□□ -0.54
SSU72-203ENST00000378725 SND1-IT1Q9HBX3 110 aa11.68□□□□□ -0.54
SSU72-203ENST00000378725 SMIM13P0DJ93 91 aa11.67□□□□□ -0.54
SSU72-203ENST00000378725 MEIG1Q5JSS6 88 aa11.66□□□□□ -0.54
SSU72-203ENST00000378725 ATOH7Q8N100 152 aa11.66□□□□□ -0.54
SSU72-203ENST00000378725 IGKV2D-26A0A0A0MRZ7 120 aa11.65□□□□□ -0.54
SSU72-203ENST00000378725 M0QXV9 152 aa11.65□□□□□ -0.54
SSU72-203ENST00000378725 C22orf24Q9Y442 160 aa11.65□□□□□ -0.54
SSU72-203ENST00000378725 A0A0U1RRA0 63 aa11.64□□□□□ -0.55
SSU72-203ENST00000378725 TP73-AS1Q9UF72 201 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms