RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 LINC00208Q96KT6 92 aa9.13□□□□□ -0.95
VPS13A-204ENST00000376634 CSDC2Q9Y534 153 aaKnown RBP9.13□□□□□ -0.95
VPS13A-204ENST00000376634 CENPEQ02224 2701 aa9.13□□□□□ -0.95
VPS13A-204ENST00000376634 SERTAD4-AS1Q5TG53 156 aa9.12□□□□□ -0.95
VPS13A-204ENST00000376634 Q8N814 137 aa9.12□□□□□ -0.95
VPS13A-204ENST00000376634 KLLNB2CW77 178 aa9.12□□□□□ -0.95
VPS13A-204ENST00000376634 RNASE3P12724 160 aaKnown RBP9.12□□□□□ -0.95
VPS13A-204ENST00000376634 NTM-AS1Q6ZSK4 140 aa9.12□□□□□ -0.95
VPS13A-204ENST00000376634 CYSRT1A8MQ03 144 aa9.12□□□□□ -0.95
VPS13A-204ENST00000376634 CRYGAP11844 174 aa9.11□□□□□ -0.95
VPS13A-204ENST00000376634 C19orf84I3L1E1 186 aa9.11□□□□□ -0.95
VPS13A-204ENST00000376634 PLA2G5P39877 138 aa9.11□□□□□ -0.95
VPS13A-204ENST00000376634 EIF4EBP1Q13541 118 aaPredicted RBP9.11□□□□□ -0.95
VPS13A-204ENST00000376634 ZNF702PQ9H963 129 aa9.1□□□□□ -0.95
VPS13A-204ENST00000376634 C10orf99Q6UWK7 81 aa9.1□□□□□ -0.95
VPS13A-204ENST00000376634 LINC01547P58512 204 aaPredicted RBP9.1□□□□□ -0.95
VPS13A-204ENST00000376634 RETNLBQ9BQ08 111 aa9.1□□□□□ -0.95
VPS13A-204ENST00000376634 MRGPRG-AS1Q2M3A8 158 aa9.09□□□□□ -0.95
VPS13A-204ENST00000376634 H0Y9P7 68 aa9.09□□□□□ -0.95
VPS13A-204ENST00000376634 VPREB1P12018 145 aa9.08□□□□□ -0.96
VPS13A-204ENST00000376634 SPINK1P00995 79 aa9.08□□□□□ -0.96
VPS13A-204ENST00000376634 TRBV7-7A0A0K0K1E9 115 aa9.08□□□□□ -0.96
VPS13A-204ENST00000376634 PRR9Q5T870 116 aa9.07□□□□□ -0.96
VPS13A-204ENST00000376634 MGAM2Q2M2H8 2515 aa9.07□□□□□ -0.96
VPS13A-204ENST00000376634 FSHBP01225 129 aa9.07□□□□□ -0.96
VPS13A-204ENST00000376634 TRBV10-3A0A0K0K1G6 114 aa9.07□□□□□ -0.96
VPS13A-204ENST00000376634 EGFEM1PQ0D2K5 195 aa9.07□□□□□ -0.96
VPS13A-204ENST00000376634 BEAN1Q3B7T3 259 aa9.07□□□□□ -0.96
VPS13A-204ENST00000376634 CDC42SE2Q9NRR3 84 aa9.07□□□□□ -0.96
VPS13A-204ENST00000376634 BRWD1-AS2P59051 145 aa9.06□□□□□ -0.96
VPS13A-204ENST00000376634 C9orf116Q5BN46 136 aaPredicted RBP9.06□□□□□ -0.96
VPS13A-204ENST00000376634 Q9BRP9 147 aa9.06□□□□□ -0.96
VPS13A-204ENST00000376634 Q6ZS46 218 aa9.06□□□□□ -0.96
VPS13A-204ENST00000376634 SBSPONQ8IVN8 264 aa9.06□□□□□ -0.96
VPS13A-204ENST00000376634 C18orf65Q6ZTR6 163 aa9.06□□□□□ -0.96
VPS13A-204ENST00000376634 C11orf71Q6IPW1 123 aa9.05□□□□□ -0.96
VPS13A-204ENST00000376634 ZNF295-AS1Q8N0V1 137 aa9.05□□□□□ -0.96
VPS13A-204ENST00000376634 LINC01006Q8NI28 216 aa9.05□□□□□ -0.96
VPS13A-204ENST00000376634 CNFNQ9BYD5 112 aa9.05□□□□□ -0.96
VPS13A-204ENST00000376634 LINC01556Q5JQF7 62 aa9.04□□□□□ -0.96
VPS13A-204ENST00000376634 CFAP46Q8IYW2 2715 aa9.04□□□□□ -0.96
VPS13A-204ENST00000376634 PRM2P04554 102 aa9.04□□□□□ -0.96
VPS13A-204ENST00000376634 C1orf229Q6ZS94 237 aaPredicted RBP9.04□□□□□ -0.96
VPS13A-204ENST00000376634 Q8N3U1 123 aa9.04□□□□□ -0.96
VPS13A-204ENST00000376634 LIMD2Q9BT23 127 aa9.03□□□□□ -0.96
VPS13A-204ENST00000376634 UNQ6190/PRO20217Q6UXQ8 127 aa9.03□□□□□ -0.96
VPS13A-204ENST00000376634 FLNBO75369 2602 aaKnown RBP9.03□□□□□ -0.96
VPS13A-204ENST00000376634 PCOTHQ58A44 107 aa9.03□□□□□ -0.96
VPS13A-204ENST00000376634 HCG22E2RYF7 251 aa9.02□□□□□ -0.97
VPS13A-204ENST00000376634 F8WDY8 70 aa9.02□□□□□ -0.97
VPS13A-204ENST00000376634 IGLV1-40P01703 118 aa9.02□□□□□ -0.97
VPS13A-204ENST00000376634 POLR2KP53803 58 aaKnown RBP9.02□□□□□ -0.97
VPS13A-204ENST00000376634 SPAG11AQ6PDA7 123 aa9.02□□□□□ -0.97
VPS13A-204ENST00000376634 A0A087WYN8 130 aa9.01□□□□□ -0.97
VPS13A-204ENST00000376634 CHCHD7Q9BUK0 85 aa9.01□□□□□ -0.97
VPS13A-204ENST00000376634 YPEL4Q96NS1 127 aa9.01□□□□□ -0.97
VPS13A-204ENST00000376634 C6orf223Q8N319 242 aa9.01□□□□□ -0.97
VPS13A-204ENST00000376634 Q6ZPA2 131 aa9.01□□□□□ -0.97
VPS13A-204ENST00000376634 C2orf48Q96LS8 159 aa9.01□□□□□ -0.97
VPS13A-204ENST00000376634 WISP2O76076 250 aa9.01□□□□□ -0.97
VPS13A-204ENST00000376634 PLA2G2AP14555 144 aa9□□□□□ -0.97
VPS13A-204ENST00000376634 LINC00575Q6W349 94 aa9□□□□□ -0.97
VPS13A-204ENST00000376634 PRR3P79522 188 aaKnown RBP9□□□□□ -0.97
VPS13A-204ENST00000376634 Q8N6K4 173 aa8.99□□□□□ -0.97
VPS13A-204ENST00000376634 C7orf65Q6ZTY9 151 aa8.99□□□□□ -0.97
VPS13A-204ENST00000376634 hDV103S1A0JD37 113 aa8.99□□□□□ -0.97
VPS13A-204ENST00000376634 TMEM254Q8TBM7 123 aa8.99□□□□□ -0.97
VPS13A-204ENST00000376634 LINC00337Q8N6G1 96 aa8.98□□□□□ -0.97
VPS13A-204ENST00000376634 IGIPA6NJ69 53 aa8.98□□□□□ -0.97
VPS13A-204ENST00000376634 A0A087WVE0 104 aa8.98□□□□□ -0.97
VPS13A-204ENST00000376634 LINC00242Q5T6M2 205 aa8.98□□□□□ -0.97
VPS13A-204ENST00000376634 CXCL6P80162 114 aa8.97□□□□□ -0.97
VPS13A-204ENST00000376634 SMIM1B2RUZ4 78 aa8.97□□□□□ -0.97
VPS13A-204ENST00000376634 C11orf21Q9P2W6 132 aa8.97□□□□□ -0.97
VPS13A-204ENST00000376634 PLA2G1BP04054 148 aaKnown RBP8.97□□□□□ -0.97
VPS13A-204ENST00000376634 COX6A2Q02221 97 aa8.97□□□□□ -0.97
VPS13A-204ENST00000376634 PRLHP81277 87 aa8.97□□□□□ -0.97
VPS13A-204ENST00000376634 OXLD1Q5BKU9 147 aa8.97□□□□□ -0.97
VPS13A-204ENST00000376634 IGKV2D-30A0A075B6S6 120 aa8.96□□□□□ -0.97
VPS13A-204ENST00000376634 IGKV2-30P06310 120 aa8.96□□□□□ -0.97
VPS13A-204ENST00000376634 GAS8-AS1O95177 125 aa8.95□□□□□ -0.98
VPS13A-204ENST00000376634 PRO0628Q9UI54 55 aa8.95□□□□□ -0.98
VPS13A-204ENST00000376634 C1orf64Q8NEQ6 169 aa8.95□□□□□ -0.98
VPS13A-204ENST00000376634 CRIP2P52943 208 aaPredicted RBP8.95□□□□□ -0.98
VPS13A-204ENST00000376634 A0A1B0GU69 56 aa8.94□□□□□ -0.98
VPS13A-204ENST00000376634 FLNAP21333 2647 aaKnown RBP8.94□□□□□ -0.98
VPS13A-204ENST00000376634 C1orf134Q5TEV5 83 aa8.94□□□□□ -0.98
VPS13A-204ENST00000376634 A0A087WSZ3 146 aa8.94□□□□□ -0.98
VPS13A-204ENST00000376634 CRIP3Q6Q6R5 217 aa8.92□□□□□ -0.98
VPS13A-204ENST00000376634 DEFB116Q30KQ4 102 aa8.92□□□□□ -0.98
VPS13A-204ENST00000376634 A0A1B0GUV1 79 aa8.91□□□□□ -0.98
VPS13A-204ENST00000376634 Q6ZTC4 211 aa8.91□□□□□ -0.98
VPS13A-204ENST00000376634 ADAMTSL4-AS1Q5T5F5 129 aa8.9□□□□□ -0.98
VPS13A-204ENST00000376634 BRI3O95415 125 aa8.9□□□□□ -0.99
VPS13A-204ENST00000376634 ACYP2P14621 99 aa8.89□□□□□ -0.99
VPS13A-204ENST00000376634 Q8N2B8 174 aa8.89□□□□□ -0.99
VPS13A-204ENST00000376634 TP53AIP1Q9HCN2 124 aa8.89□□□□□ -0.99
VPS13A-204ENST00000376634 IGLV1-51P01701 117 aa8.89□□□□□ -0.99
VPS13A-204ENST00000376634 FHL2Q14192 279 aa8.89□□□□□ -0.99
VPS13A-204ENST00000376634 IGLV4-60A0A075B6I1 120 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms