RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 SS18Q15532 418 aa9.5□□□□□ -0.89
CCDC88C-201ENST00000331194 TMEM89A2RUT3 159 aa9.49□□□□□ -0.89
CCDC88C-201ENST00000331194 PAX4O43316 350 aa9.49□□□□□ -0.89
CCDC88C-201ENST00000331194 OBSCN-AS1Q96MR7 158 aa9.49□□□□□ -0.89
CCDC88C-201ENST00000331194 COX7B2Q8TF08 81 aa9.49□□□□□ -0.89
CCDC88C-201ENST00000331194 TMEM243Q9BU79 118 aa9.49□□□□□ -0.89
CCDC88C-201ENST00000331194 DEFB112Q30KQ8 113 aa9.49□□□□□ -0.89
CCDC88C-201ENST00000331194 LOC100131303A0A0U1RQF7 123 aa9.48□□□□□ -0.89
CCDC88C-201ENST00000331194 GHRHP01286 108 aa9.48□□□□□ -0.89
CCDC88C-201ENST00000331194 PRR3P79522 188 aaKnown RBP9.48□□□□□ -0.89
CCDC88C-201ENST00000331194 Q6ZTI0 123 aa9.48□□□□□ -0.89
CCDC88C-201ENST00000331194 RNASE1P07998 156 aaKnown RBP9.48□□□□□ -0.89
CCDC88C-201ENST00000331194 ENHOQ6UWT2 76 aa9.47□□□□□ -0.89
CCDC88C-201ENST00000331194 C20orf197Q8N268 126 aa9.47□□□□□ -0.89
CCDC88C-201ENST00000331194 PF4P02776 101 aa9.47□□□□□ -0.89
CCDC88C-201ENST00000331194 TMEM86BQ8N661 226 aa9.47□□□□□ -0.89
CCDC88C-201ENST00000331194 FN1P02751 2386 aaKnown RBP9.46□□□□□ -0.89
CCDC88C-201ENST00000331194 SETXQ7Z333 2677 aaKnown RBP9.46□□□□□ -0.89
CCDC88C-201ENST00000331194 KHDC1LQ5JSQ8 128 aa9.46□□□□□ -0.9
CCDC88C-201ENST00000331194 FAM19A3Q7Z5A8 133 aa9.46□□□□□ -0.9
CCDC88C-201ENST00000331194 MAP6D1Q9H9H5 199 aa9.45□□□□□ -0.9
CCDC88C-201ENST00000331194 NBEAL2Q6ZNJ1 2754 aa9.45□□□□□ -0.9
CCDC88C-201ENST00000331194 UBE2L6O14933 153 aa9.45□□□□□ -0.9
CCDC88C-201ENST00000331194 H0YGX0 51 aa9.45□□□□□ -0.9
CCDC88C-201ENST00000331194 IGLV4-60A0A075B6I1 120 aa9.44□□□□□ -0.9
CCDC88C-201ENST00000331194 MSMBP08118 114 aa9.44□□□□□ -0.9
CCDC88C-201ENST00000331194 KMT2BQ9UMN6 2715 aaPredicted RBP9.44□□□□□ -0.9
CCDC88C-201ENST00000331194 K7EQD1 137 aa9.44□□□□□ -0.9
CCDC88C-201ENST00000331194 CCKP06307 115 aa9.44□□□□□ -0.9
CCDC88C-201ENST00000331194 PLA2G2AP14555 144 aa9.44□□□□□ -0.9
CCDC88C-201ENST00000331194 BRK1Q8WUW1 75 aa9.44□□□□□ -0.9
CCDC88C-201ENST00000331194 OTOGQ6ZRI0 2925 aa9.43□□□□□ -0.9
CCDC88C-201ENST00000331194 V9GYY9 64 aa9.43□□□□□ -0.9
CCDC88C-201ENST00000331194 INSP01308 110 aa9.43□□□□□ -0.9
CCDC88C-201ENST00000331194 ORMDL1Q9P0S3 153 aa9.43□□□□□ -0.9
CCDC88C-201ENST00000331194 C1orf158Q8N1D5 194 aa9.42□□□□□ -0.9
CCDC88C-201ENST00000331194 OVOL2Q9BRP0 275 aa9.42□□□□□ -0.9
CCDC88C-201ENST00000331194 A8MTW9 85 aa9.41□□□□□ -0.9
CCDC88C-201ENST00000331194 NOP10Q9NPE3 64 aaKnown RBP9.41□□□□□ -0.9
CCDC88C-201ENST00000331194 HIVEP2P31629 2446 aa9.41□□□□□ -0.9
CCDC88C-201ENST00000331194 NDUFC2O95298 119 aa9.4□□□□□ -0.9
CCDC88C-201ENST00000331194 TEP1Q99973 2627 aaKnown RBP9.4□□□□□ -0.9
CCDC88C-201ENST00000331194 PDZD2O15018 2839 aa9.4□□□□□ -0.91
CCDC88C-201ENST00000331194 C1orf195Q5TG92 126 aa9.39□□□□□ -0.91
CCDC88C-201ENST00000331194 A0A096LNT2 108 aa9.39□□□□□ -0.91
CCDC88C-201ENST00000331194 IGHV3OR16-9A0A0B4J2B5 98 aa9.38□□□□□ -0.91
CCDC88C-201ENST00000331194 TRBV6-4A0A1B0GX49 114 aa9.38□□□□□ -0.91
CCDC88C-201ENST00000331194 M0R2N4 97 aa9.38□□□□□ -0.91
CCDC88C-201ENST00000331194 XCL1P47992 114 aa9.38□□□□□ -0.91
CCDC88C-201ENST00000331194 DYNLRB2Q8TF09 96 aa9.38□□□□□ -0.91
CCDC88C-201ENST00000331194 SERP1Q9Y6X1 66 aa9.38□□□□□ -0.91
CCDC88C-201ENST00000331194 FP248Q71RG6 208 aaPredicted RBP9.37□□□□□ -0.91
CCDC88C-201ENST00000331194 LINC00474Q9P2X8 69 aa9.37□□□□□ -0.91
CCDC88C-201ENST00000331194 SNURFQ9Y675 71 aa9.37□□□□□ -0.91
CCDC88C-201ENST00000331194 NANOS2P60321 138 aaKnown RBP9.37□□□□□ -0.91
CCDC88C-201ENST00000331194 C6orf226Q5I0X4 101 aa9.37□□□□□ -0.91
CCDC88C-201ENST00000331194 IBA57-AS1B1ANH7 110 aa9.36□□□□□ -0.91
CCDC88C-201ENST00000331194 CLPSL2Q6UWE3 100 aa9.36□□□□□ -0.91
CCDC88C-201ENST00000331194 C16orf95Q9H693 158 aa9.36□□□□□ -0.91
CCDC88C-201ENST00000331194 ODF3L2Q3SX64 289 aa9.36□□□□□ -0.91
CCDC88C-201ENST00000331194 Q8N814 137 aa9.36□□□□□ -0.91
CCDC88C-201ENST00000331194 ZNF702PQ9H963 129 aa9.36□□□□□ -0.91
CCDC88C-201ENST00000331194 TRBV10-1A0A0K0K1A3 114 aa9.35□□□□□ -0.91
CCDC88C-201ENST00000331194 NDUFC2-KCTD14E9PQ53 114 aa9.35□□□□□ -0.91
CCDC88C-201ENST00000331194 TRGV2A0A075B6R0 118 aa9.34□□□□□ -0.91
CCDC88C-201ENST00000331194 TRAV10A0A0B4J240 114 aa9.34□□□□□ -0.91
CCDC88C-201ENST00000331194 DEFB114Q30KQ6 69 aa9.34□□□□□ -0.91
CCDC88C-201ENST00000331194 STHQ8IWL8 128 aa9.34□□□□□ -0.91
CCDC88C-201ENST00000331194 C11orf44Q8N8P7 122 aa9.34□□□□□ -0.91
CCDC88C-201ENST00000331194 SPATA3Q8NHX4 192 aa9.34□□□□□ -0.91
CCDC88C-201ENST00000331194 H7BZZ5 65 aa9.34□□□□□ -0.92
CCDC88C-201ENST00000331194 IL17DQ8TAD2 202 aa9.33□□□□□ -0.92
CCDC88C-201ENST00000331194 RMI2Q96E14 147 aa9.33□□□□□ -0.92
CCDC88C-201ENST00000331194 B4DSR2 109 aa9.33□□□□□ -0.92
CCDC88C-201ENST00000331194 A0A087WZ39 114 aa9.32□□□□□ -0.92
CCDC88C-201ENST00000331194 LY6G6DO95868 133 aa9.32□□□□□ -0.92
CCDC88C-201ENST00000331194 LYPD5Q6UWN5 251 aa9.32□□□□□ -0.92
CCDC88C-201ENST00000331194 HAMPP81172 84 aa9.32□□□□□ -0.92
CCDC88C-201ENST00000331194 C9orf116Q5BN46 136 aaPredicted RBP9.32□□□□□ -0.92
CCDC88C-201ENST00000331194 UBL5Q9BZL1 73 aa9.32□□□□□ -0.92
CCDC88C-201ENST00000331194 WFDC10AQ9H1F0 79 aa9.31□□□□□ -0.92
CCDC88C-201ENST00000331194 SMIM26A0A096LP01 95 aa9.31□□□□□ -0.92
CCDC88C-201ENST00000331194 JMJD7-PLA2G4BH0Y9G9 81 aa9.31□□□□□ -0.92
CCDC88C-201ENST00000331194 RBM3P98179 157 aaKnown RBP9.31□□□□□ -0.92
CCDC88C-201ENST00000331194 Q8NDZ9 215 aa9.31□□□□□ -0.92
CCDC88C-201ENST00000331194 LINC00482Q8N8I6 264 aa9.31□□□□□ -0.92
CCDC88C-201ENST00000331194 TMEM256-PLSCR3K7ERE1 68 aa9.3□□□□□ -0.92
CCDC88C-201ENST00000331194 S100A7L2Q5SY68 101 aa9.3□□□□□ -0.92
CCDC88C-201ENST00000331194 TRGV4A0A0C4DH28 118 aa9.3□□□□□ -0.92
CCDC88C-201ENST00000331194 C6orf99Q4VX62 202 aa9.3□□□□□ -0.92
CCDC88C-201ENST00000331194 LINC00959A0A1B0GUT2 108 aa9.29□□□□□ -0.92
CCDC88C-201ENST00000331194 A0A1W2PRX2 142 aa9.29□□□□□ -0.92
CCDC88C-201ENST00000331194 EPM2AB3EWF7 344 aa9.29□□□□□ -0.92
CCDC88C-201ENST00000331194 LINC00167Q96N53 147 aa9.29□□□□□ -0.92
CCDC88C-201ENST00000331194 TRBV6-8A0A0A6YYG3 113 aa9.29□□□□□ -0.92
CCDC88C-201ENST00000331194 SCXQ7RTU7 201 aa9.29□□□□□ -0.92
CCDC88C-201ENST00000331194 MPLKIPQ8TAP9 179 aa9.29□□□□□ -0.92
CCDC88C-201ENST00000331194 F8WEM9 126 aa9.28□□□□□ -0.92
CCDC88C-201ENST00000331194 CR1P17927 2039 aa9.28□□□□□ -0.92
CCDC88C-201ENST00000331194 VWFP04275 2813 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms