RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 C6orf226Q5I0X4 101 aa8.14□□□□□ -1.11
SS18-202ENST00000269138 TMEM170BQ5T4T1 132 aa8.14□□□□□ -1.11
SS18-202ENST00000269138 SCXQ7RTU7 201 aa8.14□□□□□ -1.11
SS18-202ENST00000269138 Q8IZM0 81 aa8.14□□□□□ -1.11
SS18-202ENST00000269138 C6orf48Q9UBA6 75 aa8.14□□□□□ -1.11
SS18-202ENST00000269138 A0A096LNI7 61 aa8.13□□□□□ -1.11
SS18-202ENST00000269138 IGKV2-24A0A0C4DH68 120 aa8.13□□□□□ -1.11
SS18-202ENST00000269138 CIRBP-AS1Q8TBR5 109 aa8.13□□□□□ -1.11
SS18-202ENST00000269138 COX7B2Q8TF08 81 aa8.13□□□□□ -1.11
SS18-202ENST00000269138 PMCHL2Q9BQD1 86 aa8.13□□□□□ -1.11
SS18-202ENST00000269138 IGLV5-39A0A0G2JS06 123 aa8.13□□□□□ -1.11
SS18-202ENST00000269138 SMR3BP02814 79 aaPredicted RBP8.13□□□□□ -1.11
SS18-202ENST00000269138 RNF151Q2KHN1 245 aa8.13□□□□□ -1.11
SS18-202ENST00000269138 MAP1LC3CQ9BXW4 147 aa8.13□□□□□ -1.11
SS18-202ENST00000269138 LOC107984640A0A0U1RRK4 108 aa8.12□□□□□ -1.11
SS18-202ENST00000269138 CKS1BP61024 79 aa8.12□□□□□ -1.11
SS18-202ENST00000269138 CIRBPQ14011 172 aaKnown RBP8.12□□□□□ -1.11
SS18-202ENST00000269138 C9orf116Q5BN46 136 aaPredicted RBP8.12□□□□□ -1.11
SS18-202ENST00000269138 SPACA4Q8TDM5 124 aa8.12□□□□□ -1.11
SS18-202ENST00000269138 HERC2O95714 4834 aa8.12□□□□□ -1.11
SS18-202ENST00000269138 GAGE2BQ13066 116 aa8.11□□□□□ -1.11
SS18-202ENST00000269138 MAJINQ3KP22 176 aa8.11□□□□□ -1.11
SS18-202ENST00000269138 DPH3Q96FX2 82 aa8.11□□□□□ -1.11
SS18-202ENST00000269138 TMEM223A0PJW6 202 aa8.1□□□□□ -1.11
SS18-202ENST00000269138 SYS1-DBNDD2H3BUS1 97 aa8.1□□□□□ -1.11
SS18-202ENST00000269138 RPL18AQ02543 176 aaKnown RBP8.1□□□□□ -1.11
SS18-202ENST00000269138 A0A087WYN8 130 aa8.09□□□□□ -1.11
SS18-202ENST00000269138 TRBV30A0A0K0K1B3 111 aa8.09□□□□□ -1.11
SS18-202ENST00000269138 PTTG1IPP53801 180 aa8.09□□□□□ -1.11
SS18-202ENST00000269138 DPM2O94777 84 aa8.08□□□□□ -1.12
SS18-202ENST00000269138 C3orf79P0CE67 100 aa8.08□□□□□ -1.12
SS18-202ENST00000269138 Q6ZRP5 223 aa8.08□□□□□ -1.12
SS18-202ENST00000269138 TLX1NBP0CAT3 122 aa8.08□□□□□ -1.12
SS18-202ENST00000269138 PLNP26678 52 aa8.08□□□□□ -1.12
SS18-202ENST00000269138 CXCL5P42830 114 aa8.08□□□□□ -1.12
SS18-202ENST00000269138 Q8N1X5 172 aa8.08□□□□□ -1.12
SS18-202ENST00000269138 HIST3H2BBQ8N257 126 aa8.08□□□□□ -1.12
SS18-202ENST00000269138 KRTAP4-5Q9BYR2 181 aa8.08□□□□□ -1.12
SS18-202ENST00000269138 PKIGQ9Y2B9 76 aa8.08□□□□□ -1.12
SS18-202ENST00000269138 IGKCP01834 107 aa8.07□□□□□ -1.12
SS18-202ENST00000269138 KRTDAPP60985 99 aa8.07□□□□□ -1.12
SS18-202ENST00000269138 GAGE2EQ4V326 116 aa8.07□□□□□ -1.12
SS18-202ENST00000269138 STPG4Q8N801 248 aa8.07□□□□□ -1.12
SS18-202ENST00000269138 PLAC8Q9NZF1 115 aa8.07□□□□□ -1.12
SS18-202ENST00000269138 GAGE2DQ9UEU5 116 aa8.07□□□□□ -1.12
SS18-202ENST00000269138 S100A6P06703 90 aa8.06□□□□□ -1.12
SS18-202ENST00000269138 LINC01545Q5VT33 79 aa8.06□□□□□ -1.12
SS18-202ENST00000269138 PET117Q6UWS5 81 aa8.06□□□□□ -1.12
SS18-202ENST00000269138 LINC00474Q9P2X8 69 aa8.06□□□□□ -1.12
SS18-202ENST00000269138 A0A1W2PNN7 141 aa8.05□□□□□ -1.12
SS18-202ENST00000269138 NDUFC2-KCTD14E9PQ53 114 aa8.05□□□□□ -1.12
SS18-202ENST00000269138 SNRPEP62304 92 aaKnown RBP8.04□□□□□ -1.12
SS18-202ENST00000269138 LINC00528Q8N1L1 170 aa8.04□□□□□ -1.12
SS18-202ENST00000269138 ZNF625Q96I27 306 aaPredicted RBP8.04□□□□□ -1.12
SS18-202ENST00000269138 HIST1H2BLQ99880 126 aa8.04□□□□□ -1.12
SS18-202ENST00000269138 S100A2P29034 98 aa8.03□□□□□ -1.12
SS18-202ENST00000269138 TSPEAR-AS2P59090 65 aa8.03□□□□□ -1.12
SS18-202ENST00000269138 Q5VSD8 79 aa8.03□□□□□ -1.12
SS18-202ENST00000269138 FAT1Q14517 4588 aa8.03□□□□□ -1.12
SS18-202ENST00000269138 FAM168BA1KXE4 195 aa8.03□□□□□ -1.12
SS18-202ENST00000269138 C9orf129Q5T035 196 aaKnown RBP8.03□□□□□ -1.12
SS18-202ENST00000269138 EPM2AB3EWF7 344 aa8.02□□□□□ -1.13
SS18-202ENST00000269138 LEPROTO15243 131 aa8.02□□□□□ -1.13
SS18-202ENST00000269138 PFN2P35080 140 aa8.02□□□□□ -1.13
SS18-202ENST00000269138 XAGE1AQ9HD64 81 aa8.02□□□□□ -1.13
SS18-202ENST00000269138 C5orf52A6NGY3 159 aa8.01□□□□□ -1.13
SS18-202ENST00000269138 FAM229AH3BQW9 127 aa8.01□□□□□ -1.13
SS18-202ENST00000269138 HERVK_113P61574 105 aa8.01□□□□□ -1.13
SS18-202ENST00000269138 KRTAP7-1Q8IUC3 87 aa8.01□□□□□ -1.13
SS18-202ENST00000269138 PLEKHB2Q96CS7 222 aa8□□□□□ -1.13
SS18-202ENST00000269138 NDUFA12Q9UI09 145 aa8□□□□□ -1.13
SS18-202ENST00000269138 ERG28Q9UKR5 140 aa8□□□□□ -1.13
SS18-202ENST00000269138 J3QQQ9 107 aa7.99□□□□□ -1.13
SS18-202ENST00000269138 FAM19A5Q7Z5A7 132 aaPredicted RBP7.99□□□□□ -1.13
SS18-202ENST00000269138 C20orf202A1L168 122 aa7.98□□□□□ -1.13
SS18-202ENST00000269138 ATOH7Q8N100 152 aa7.98□□□□□ -1.13
SS18-202ENST00000269138 A0A0U1RRA0 63 aa7.98□□□□□ -1.13
SS18-202ENST00000269138 E9PLD3 99 aa7.98□□□□□ -1.13
SS18-202ENST00000269138 KRTAP10-4P60372 401 aaPredicted RBP7.98□□□□□ -1.13
SS18-202ENST00000269138 SERTAD4-AS1Q5TG53 156 aa7.98□□□□□ -1.13
SS18-202ENST00000269138 SFTA2Q6UW10 78 aa7.98□□□□□ -1.13
SS18-202ENST00000269138 PHF5AQ7RTV0 110 aaKnown RBP7.98□□□□□ -1.13
SS18-202ENST00000269138 MYMXA0A1B0GTQ4 84 aa7.97□□□□□ -1.13
SS18-202ENST00000269138 LGALS3P17931 250 aaKnown RBP7.97□□□□□ -1.13
SS18-202ENST00000269138 VPS13BQ7Z7G8 4022 aa7.96□□□□□ -1.13
SS18-202ENST00000269138 IGKV2D-26A0A0A0MRZ7 120 aa7.96□□□□□ -1.14
SS18-202ENST00000269138 SMIM13P0DJ93 91 aa7.96□□□□□ -1.14
SS18-202ENST00000269138 LINC00158P58513 81 aa7.96□□□□□ -1.14
SS18-202ENST00000269138 RPL37AP61513 92 aaKnown RBP7.96□□□□□ -1.14
SS18-202ENST00000269138 COX17Q14061 63 aa7.96□□□□□ -1.14
SS18-202ENST00000269138 C7orf33Q8WU49 177 aa7.96□□□□□ -1.14
SS18-202ENST00000269138 PLA2G1BP04054 148 aaKnown RBP7.95□□□□□ -1.14
SS18-202ENST00000269138 HERV-K104P63124 156 aa7.95□□□□□ -1.14
SS18-202ENST00000269138 SND1-IT1Q9HBX3 110 aa7.95□□□□□ -1.14
SS18-202ENST00000269138 SRRM2Q9UQ35 2752 aaKnown RBP7.94□□□□□ -1.14
SS18-202ENST00000269138 ANKRD39Q53RE8 183 aa7.94□□□□□ -1.14
SS18-202ENST00000269138 MEIG1Q5JSS6 88 aa7.94□□□□□ -1.14
SS18-202ENST00000269138 TMA7Q9Y2S6 64 aaKnown RBP7.94□□□□□ -1.14
SS18-202ENST00000269138 M0QXV9 152 aa7.93□□□□□ -1.14
SS18-202ENST00000269138 NMUP48645 174 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms