RNA–Protein interactions for RNA: ENST00000629293.1

LINC00550-201, long intergenic non-protein coding RNA 550, humanhuman

TSL 1 (best) BASIC

Gene LINC00550, Length 3,434 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00550-201ENST00000629293 JPT2Q9H910 190 aa3.38□□□□□ -1.87
LINC00550-201ENST00000629293 TRBV7-3A0A075B6L6 115 aa3.38□□□□□ -1.87
LINC00550-201ENST00000629293 A0A1W2PPM0 123 aa3.38□□□□□ -1.87
LINC00550-201ENST00000629293 H3BUT2 72 aa3.38□□□□□ -1.87
LINC00550-201ENST00000629293 CDKN1BP46527 198 aa3.38□□□□□ -1.87
LINC00550-201ENST00000629293 CD164L2Q6UWJ8 174 aa3.38□□□□□ -1.87
LINC00550-201ENST00000629293 FOXI2Q6ZQN5 318 aa3.38□□□□□ -1.87
LINC00550-201ENST00000629293 CST9LQ9H4G1 147 aa3.38□□□□□ -1.87
LINC00550-201ENST00000629293 IGLV4-69A0A075B6H9 119 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 E9PLD3 99 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 H3BMM0 161 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 DUSP14O95147 198 aaKnown RBP3.37□□□□□ -1.87
LINC00550-201ENST00000629293 ZFP2Q6ZN57 461 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 NEGR1Q7Z3B1 354 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 CSNK1G2-AS1Q8NCQ2 148 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 TIMM17AQ99595 171 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 MDFICQ9P1T7 246 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 CYSLTR1Q9Y271 337 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 CBY1Q9Y3M2 126 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 IGHV1OR15-1A0A075B7D0 117 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 TRAV2A0A0B4J234 112 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 MYMXA0A1B0GTQ4 84 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 A0A1B0GWB2 263 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 F5H768 121 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 M0QY20 66 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 RRN3P1Q2M238 152 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 GTF2H5Q6ZYL4 71 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 HSPG2P98160 4391 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 LRP1BQ9NZR2 4599 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 TRAV12-2A0A075B6T6 113 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 SMIM13P0DJ93 91 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 SPINK13Q1W4C9 94 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 OCIAD2Q56VL3 154 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 OR5A1Q8NGJ0 315 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 MPLKIPQ8TAP9 179 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 TMEM141Q96I45 108 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 KRTAP4-2Q9BYR5 136 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 DNAH6Q9C0G6 4158 aa3.37□□□□□ -1.87
LINC00550-201ENST00000629293 SDHAF1A6NFY7 115 aa3.36□□□□□ -1.87
LINC00550-201ENST00000629293 K7ERJ3 54 aa3.36□□□□□ -1.87
LINC00550-201ENST00000629293 HERV-K104P63124 156 aa3.36□□□□□ -1.87
LINC00550-201ENST00000629293 RHOHQ15669 191 aa3.36□□□□□ -1.87
LINC00550-201ENST00000629293 KRTAP19-1Q8IUB9 90 aa3.36□□□□□ -1.87
LINC00550-201ENST00000629293 NAA38Q9BRA0 125 aaKnown RBP3.36□□□□□ -1.87
LINC00550-201ENST00000629293 PRADC1Q9BSG0 188 aa3.36□□□□□ -1.87
LINC00550-201ENST00000629293 DNAH17Q9UFH2 4485 aa3.36□□□□□ -1.87
LINC00550-201ENST00000629293 C11orf86A6NJI1 115 aa3.36□□□□□ -1.87
LINC00550-201ENST00000629293 PMVKQ15126 192 aa3.36□□□□□ -1.87
LINC00550-201ENST00000629293 NTN5Q8WTR8 489 aaPredicted RBP3.36□□□□□ -1.87
LINC00550-201ENST00000629293 RAB37Q96AX2 223 aa3.36□□□□□ -1.87
LINC00550-201ENST00000629293 DNAH5Q8TE73 4624 aa3.36□□□□□ -1.87
LINC00550-201ENST00000629293 KRTAP9-7A8MTY7 169 aa3.35□□□□□ -1.87
LINC00550-201ENST00000629293 FUSP35637 526 aaKnown RBP eCLIP3.35□□□□□ -1.87
LINC00550-201ENST00000629293 RPL39P62891 51 aaKnown RBP3.35□□□□□ -1.87
LINC00550-201ENST00000629293 ZNF876PQ49A33 203 aa3.35□□□□□ -1.87
LINC00550-201ENST00000629293 KIR2DL4Q99706 377 aa3.35□□□□□ -1.87
LINC00550-201ENST00000629293 SPCS1Q9Y6A9 102 aa3.35□□□□□ -1.87
LINC00550-201ENST00000629293 PKD1P98161 4303 aa3.35□□□□□ -1.87
LINC00550-201ENST00000629293 IGLV5-39A0A0G2JS06 123 aa3.35□□□□□ -1.87
LINC00550-201ENST00000629293 FABP2P12104 132 aa3.35□□□□□ -1.87
LINC00550-201ENST00000629293 Q6ZR54 194 aa3.35□□□□□ -1.87
LINC00550-201ENST00000629293 PTH2Q96A98 100 aa3.35□□□□□ -1.87
LINC00550-201ENST00000629293 NHP2Q9NX24 153 aaKnown RBP3.35□□□□□ -1.87
LINC00550-201ENST00000629293 APOBP04114 4563 aaKnown RBP3.35□□□□□ -1.87
LINC00550-201ENST00000629293 NFE4Q86UQ8 179 aa3.35□□□□□ -1.87
LINC00550-201ENST00000629293 AMELXQ99217 191 aa3.35□□□□□ -1.87
LINC00550-201ENST00000629293 LINC00467Q9BRT7 94 aa3.35□□□□□ -1.87
LINC00550-201ENST00000629293 ZNF56Q15929 161 aa3.34□□□□□ -1.87
LINC00550-201ENST00000629293 FAM74A4Q5TZK3 123 aa3.34□□□□□ -1.87
LINC00550-201ENST00000629293 ZNRF2Q8NHG8 242 aa3.34□□□□□ -1.87
LINC00550-201ENST00000629293 PLEKHB2Q96CS7 222 aa3.34□□□□□ -1.87
LINC00550-201ENST00000629293 A0A0J9YY99 117 aa3.34□□□□□ -1.87
LINC00550-201ENST00000629293 ZNF815PA8K554 130 aa3.34□□□□□ -1.87
LINC00550-201ENST00000629293 CCL18P55774 89 aa3.34□□□□□ -1.87
LINC00550-201ENST00000629293 TSPEAR-AS2P59090 65 aa3.34□□□□□ -1.87
LINC00550-201ENST00000629293 C1orf158Q8N1D5 194 aa3.34□□□□□ -1.87
LINC00550-201ENST00000629293 C6orf223Q8N319 242 aa3.34□□□□□ -1.87
LINC00550-201ENST00000629293 C20orf203Q8NBC4 194 aa3.34□□□□□ -1.87
LINC00550-201ENST00000629293 HIST1H4GQ99525 98 aa3.34□□□□□ -1.87
LINC00550-201ENST00000629293 NBDYA0A0U1RRE5 68 aa3.34□□□□□ -1.88
LINC00550-201ENST00000629293 UBE2D1P51668 147 aa3.34□□□□□ -1.88
LINC00550-201ENST00000629293 LCE3BQ5TA77 95 aa3.34□□□□□ -1.88
LINC00550-201ENST00000629293 FAM104AQ969W3 186 aa3.34□□□□□ -1.88
LINC00550-201ENST00000629293 SPANXB1Q9NS25 103 aaPredicted RBP3.34□□□□□ -1.88
LINC00550-201ENST00000629293 I3L3M4 83 aa3.33□□□□□ -1.88
LINC00550-201ENST00000629293 HERVK_113P61574 105 aa3.33□□□□□ -1.88
LINC00550-201ENST00000629293 LINC01587Q99440 93 aa3.33□□□□□ -1.88
LINC00550-201ENST00000629293 IGLV4-3A0A075B6K6 122 aa3.33□□□□□ -1.88
LINC00550-201ENST00000629293 TEX48A0A1B0GUV7 120 aa3.33□□□□□ -1.88
LINC00550-201ENST00000629293 SMIM9A6NGZ8 99 aa3.33□□□□□ -1.88
LINC00550-201ENST00000629293 K7ERU9 68 aa3.33□□□□□ -1.88
LINC00550-201ENST00000629293 SRSF9Q13242 221 aaKnown RBP eCLIP3.33□□□□□ -1.88
LINC00550-201ENST00000629293 LCE4AQ5TA78 99 aa3.33□□□□□ -1.88
LINC00550-201ENST00000629293 C11orf72Q8NBR9 251 aa3.33□□□□□ -1.88
LINC00550-201ENST00000629293 ZNF479Q96JC4 524 aa3.33□□□□□ -1.88
LINC00550-201ENST00000629293 PYGO1Q9Y3Y4 419 aa3.33□□□□□ -1.88
LINC00550-201ENST00000629293 TMEM223A0PJW6 202 aa3.32□□□□□ -1.88
LINC00550-201ENST00000629293 M0R2P5 195 aa3.32□□□□□ -1.88
LINC00550-201ENST00000629293 AZU1P20160 251 aa3.32□□□□□ -1.88
LINC00550-201ENST00000629293 DEFB104AQ8WTQ1 72 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms