RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 PYGO1Q9Y3Y4 419 aa9.03□□□□□ -0.96
PNKP-223ENST00000629179 IGLV4-69A0A075B6H9 119 aa9.02□□□□□ -0.97
PNKP-223ENST00000629179 IGLV4-3A0A075B6K6 122 aa9.02□□□□□ -0.97
PNKP-223ENST00000629179 IGKV2-24A0A0C4DH68 120 aa9.02□□□□□ -0.97
PNKP-223ENST00000629179 SYCNQ0VAF6 134 aa9.02□□□□□ -0.97
PNKP-223ENST00000629179 C2orf66Q6UXQ4 117 aa9.02□□□□□ -0.97
PNKP-223ENST00000629179 CARD19Q96LW7 228 aa9.02□□□□□ -0.97
PNKP-223ENST00000629179 RPS10P5Q9NQ39 176 aa9.02□□□□□ -0.97
PNKP-223ENST00000629179 RPL37AP61513 92 aaKnown RBP9.01□□□□□ -0.97
PNKP-223ENST00000629179 MAJINQ3KP22 176 aa9.01□□□□□ -0.97
PNKP-223ENST00000629179 TMEM141Q96I45 108 aa9.01□□□□□ -0.97
PNKP-223ENST00000629179 NXT2Q9NPJ8 142 aaKnown RBP9.01□□□□□ -0.97
PNKP-223ENST00000629179 CYSLTR1Q9Y271 337 aa9.01□□□□□ -0.97
PNKP-223ENST00000629179 A0A096LNI7 61 aa9□□□□□ -0.97
PNKP-223ENST00000629179 IGHV3OR16-9A0A0B4J2B5 98 aa9□□□□□ -0.97
PNKP-223ENST00000629179 APOMO95445 188 aa9□□□□□ -0.97
PNKP-223ENST00000629179 RHEBQ15382 184 aa9□□□□□ -0.97
PNKP-223ENST00000629179 ORMDL2Q53FV1 153 aa9□□□□□ -0.97
PNKP-223ENST00000629179 ZC2HC1BQ5TFG8 222 aa9□□□□□ -0.97
PNKP-223ENST00000629179 Q6ZRU5 148 aa9□□□□□ -0.97
PNKP-223ENST00000629179 GNB1LQ9BYB4 327 aa9□□□□□ -0.97
PNKP-223ENST00000629179 CAMK2N2Q96S95 79 aa8.99□□□□□ -0.97
PNKP-223ENST00000629179 PLAC8Q9NZF1 115 aa8.99□□□□□ -0.97
PNKP-223ENST00000629179 K7EMI3 77 aa8.98□□□□□ -0.97
PNKP-223ENST00000629179 SPAG11BQ08648 103 aa8.98□□□□□ -0.97
PNKP-223ENST00000629179 LINC00242Q5T6M2 205 aa8.98□□□□□ -0.97
PNKP-223ENST00000629179 TEX43Q6ZNM6 134 aa8.98□□□□□ -0.97
PNKP-223ENST00000629179 TGIF2-C20orf24A0A0A6YYL0 155 aa8.97□□□□□ -0.97
PNKP-223ENST00000629179 IGIPA6NJ69 53 aa8.97□□□□□ -0.97
PNKP-223ENST00000629179 COX19Q49B96 90 aa8.97□□□□□ -0.97
PNKP-223ENST00000629179 LINC00173Q6ZV60 143 aa8.97□□□□□ -0.97
PNKP-223ENST00000629179 STPG4Q8N801 248 aa8.97□□□□□ -0.97
PNKP-223ENST00000629179 ORAOV1Q8WV07 137 aa8.97□□□□□ -0.97
PNKP-223ENST00000629179 C2orf48Q96LS8 159 aa8.97□□□□□ -0.97
PNKP-223ENST00000629179 ALKBH7Q9BT30 221 aaPredicted RBP8.97□□□□□ -0.97
PNKP-223ENST00000629179 MYCBP2O75592 4640 aa8.96□□□□□ -0.97
PNKP-223ENST00000629179 UBE2D1P51668 147 aa8.96□□□□□ -0.98
PNKP-223ENST00000629179 FABP9Q0Z7S8 132 aa8.96□□□□□ -0.98
PNKP-223ENST00000629179 OR10D4PQ8NGN7 298 aa8.96□□□□□ -0.98
PNKP-223ENST00000629179 AMELXQ99217 191 aa8.96□□□□□ -0.98
PNKP-223ENST00000629179 MRPL18Q9H0U6 180 aaKnown RBP8.96□□□□□ -0.98
PNKP-223ENST00000629179 VCX2Q9H322 139 aa8.96□□□□□ -0.98
PNKP-223ENST00000629179 A0A0J9YXV3 536 aa8.95□□□□□ -0.98
PNKP-223ENST00000629179 LOC107984640A0A0U1RRK4 108 aa8.95□□□□□ -0.98
PNKP-223ENST00000629179 SCO1O75880 301 aa8.95□□□□□ -0.98
PNKP-223ENST00000629179 HNRNPA3P51991 378 aaKnown RBP8.95□□□□□ -0.98
PNKP-223ENST00000629179 Q6ZN92 141 aa8.95□□□□□ -0.98
PNKP-223ENST00000629179 C2orf88Q9BSF0 95 aa8.95□□□□□ -0.98
PNKP-223ENST00000629179 PKIGQ9Y2B9 76 aa8.95□□□□□ -0.98
PNKP-223ENST00000629179 A0A087WZ39 114 aa8.94□□□□□ -0.98
PNKP-223ENST00000629179 MT-ND6P03923 174 aa8.94□□□□□ -0.98
PNKP-223ENST00000629179 PTTG1IPP53801 180 aa8.94□□□□□ -0.98
PNKP-223ENST00000629179 GAGE2BQ13066 116 aa8.94□□□□□ -0.98
PNKP-223ENST00000629179 TOMM6Q96B49 74 aa8.94□□□□□ -0.98
PNKP-223ENST00000629179 SMCO4Q9NRQ5 59 aa8.94□□□□□ -0.98
PNKP-223ENST00000629179 LINC00474Q9P2X8 69 aa8.94□□□□□ -0.98
PNKP-223ENST00000629179 TMA7Q9Y2S6 64 aaKnown RBP8.94□□□□□ -0.98
PNKP-223ENST00000629179 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.93□□□□□ -0.98
PNKP-223ENST00000629179 J3QL48 77 aa8.93□□□□□ -0.98
PNKP-223ENST00000629179 NPSP0C0P6 89 aa8.93□□□□□ -0.98
PNKP-223ENST00000629179 G0S2P27469 103 aa8.93□□□□□ -0.98
PNKP-223ENST00000629179 LINC01546A6NGU7 62 aa8.92□□□□□ -0.98
PNKP-223ENST00000629179 KRTAP29-1A8MX34 341 aaPredicted RBP8.92□□□□□ -0.98
PNKP-223ENST00000629179 KIAA0087Q14695 138 aa8.92□□□□□ -0.98
PNKP-223ENST00000629179 RNF151Q2KHN1 245 aa8.92□□□□□ -0.98
PNKP-223ENST00000629179 C10orf25Q5T742 122 aa8.92□□□□□ -0.98
PNKP-223ENST00000629179 UNQ6190/PRO20217Q6UXQ8 127 aa8.92□□□□□ -0.98
PNKP-223ENST00000629179 C7orf33Q8WU49 177 aa8.92□□□□□ -0.98
PNKP-223ENST00000629179 SCGB3A1Q96QR1 104 aa8.92□□□□□ -0.98
PNKP-223ENST00000629179 TIMM17AQ99595 171 aa8.92□□□□□ -0.98
PNKP-223ENST00000629179 F8WDY8 70 aa8.91□□□□□ -0.98
PNKP-223ENST00000629179 NDUFA1O15239 70 aa8.91□□□□□ -0.98
PNKP-223ENST00000629179 RPL18AQ02543 176 aaKnown RBP8.91□□□□□ -0.98
PNKP-223ENST00000629179 ERASQ7Z444 233 aa8.91□□□□□ -0.98
PNKP-223ENST00000629179 MRPL35Q9NZE8 188 aaKnown RBP8.91□□□□□ -0.98
PNKP-223ENST00000629179 TRAPPC1Q9Y5R8 145 aa8.91□□□□□ -0.98
PNKP-223ENST00000629179 PAPPA-AS1Q5QFB9 102 aa8.9□□□□□ -0.98
PNKP-223ENST00000629179 FA2HQ7L5A8 372 aa8.9□□□□□ -0.98
PNKP-223ENST00000629179 FAM19A3Q7Z5A8 133 aa8.9□□□□□ -0.98
PNKP-223ENST00000629179 A0A1W2PNN7 141 aa8.89□□□□□ -0.99
PNKP-223ENST00000629179 C2orf82Q6UX34 121 aa8.89□□□□□ -0.99
PNKP-223ENST00000629179 LINC01561Q8N1V8 128 aa8.89□□□□□ -0.99
PNKP-223ENST00000629179 C6orf48Q9UBA6 75 aa8.89□□□□□ -0.99
PNKP-223ENST00000629179 PKHD1L1Q86WI1 4243 aa8.88□□□□□ -0.99
PNKP-223ENST00000629179 C18orf32Q8TCD1 76 aa8.87□□□□□ -0.99
PNKP-223ENST00000629179 GEMIN7Q9H840 131 aaKnown RBP8.87□□□□□ -0.99
PNKP-223ENST00000629179 CDKN2A-AS1Q9UH64 79 aa8.87□□□□□ -0.99
PNKP-223ENST00000629179 LOC105371267A0A1B0GV96 52 aa8.86□□□□□ -0.99
PNKP-223ENST00000629179 LINC01549A6NIU2 74 aa8.86□□□□□ -0.99
PNKP-223ENST00000629179 OXTP01178 125 aa8.86□□□□□ -0.99
PNKP-223ENST00000629179 HERVK_113P63121 156 aa8.86□□□□□ -0.99
PNKP-223ENST00000629179 SEC11AP67812 179 aa8.86□□□□□ -0.99
PNKP-223ENST00000629179 C9orf116Q5BN46 136 aaPredicted RBP8.86□□□□□ -0.99
PNKP-223ENST00000629179 URB1-AS1Q96HZ7 61 aa8.86□□□□□ -0.99
PNKP-223ENST00000629179 TOMM7Q9P0U1 55 aa8.86□□□□□ -0.99
PNKP-223ENST00000629179 TLX1NBP0CAT3 122 aa8.85□□□□□ -0.99
PNKP-223ENST00000629179 PRR3P79522 188 aaKnown RBP8.85□□□□□ -0.99
PNKP-223ENST00000629179 Q6ZRP5 223 aa8.85□□□□□ -0.99
PNKP-223ENST00000629179 YPEL4Q96NS1 127 aa8.85□□□□□ -0.99
PNKP-223ENST00000629179 CST9LQ9H4G1 147 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms