RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 C5orf38Q86SI9 138 aa11.94□□□□□ -0.5
CCDC28A-203ENST00000617445 OR10D4PQ8NGN7 298 aa11.94□□□□□ -0.5
CCDC28A-203ENST00000617445 TMEM218A2RU14 115 aa11.93□□□□□ -0.5
CCDC28A-203ENST00000617445 RNF151Q2KHN1 245 aa11.93□□□□□ -0.5
CCDC28A-203ENST00000617445 LAMTOR2Q9Y2Q5 125 aa11.93□□□□□ -0.5
CCDC28A-203ENST00000617445 MT1HL1P0DM35 61 aa11.92□□□□□ -0.5
CCDC28A-203ENST00000617445 PRELID3AQ96N28 172 aa11.92□□□□□ -0.5
CCDC28A-203ENST00000617445 PLA2G2DQ9UNK4 145 aa11.92□□□□□ -0.5
CCDC28A-203ENST00000617445 IGHV3OR16-9A0A0B4J2B5 98 aa11.91□□□□□ -0.5
CCDC28A-203ENST00000617445 PRSS47A8MTI9 375 aa11.91□□□□□ -0.5
CCDC28A-203ENST00000617445 GAGE2BQ13066 116 aa11.91□□□□□ -0.5
CCDC28A-203ENST00000617445 FAM104AQ969W3 186 aa11.91□□□□□ -0.5
CCDC28A-203ENST00000617445 PYGO1Q9Y3Y4 419 aa11.91□□□□□ -0.5
CCDC28A-203ENST00000617445 ADCYAP1P18509 176 aa11.9□□□□□ -0.5
CCDC28A-203ENST00000617445 IFI27P40305 119 aaPredicted RBP11.9□□□□□ -0.5
CCDC28A-203ENST00000617445 SPAG11BQ08648 103 aa11.9□□□□□ -0.5
CCDC28A-203ENST00000617445 Q6ZRP5 223 aa11.9□□□□□ -0.5
CCDC28A-203ENST00000617445 SEC11CQ9BY50 192 aa11.9□□□□□ -0.5
CCDC28A-203ENST00000617445 IFITM10A6NMD0 228 aa11.89□□□□□ -0.51
CCDC28A-203ENST00000617445 COMMD7Q86VX2 200 aa11.89□□□□□ -0.51
CCDC28A-203ENST00000617445 IMMP2LQ96T52 175 aa11.89□□□□□ -0.51
CCDC28A-203ENST00000617445 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.88□□□□□ -0.51
CCDC28A-203ENST00000617445 SPINK6Q6UWN8 80 aa11.88□□□□□ -0.51
CCDC28A-203ENST00000617445 OPRPNQ99935 248 aaPredicted RBP11.88□□□□□ -0.51
CCDC28A-203ENST00000617445 CTDSP1Q9GZU7 261 aa11.88□□□□□ -0.51
CCDC28A-203ENST00000617445 MRPL35Q9NZE8 188 aaKnown RBP11.88□□□□□ -0.51
CCDC28A-203ENST00000617445 ORAOV1Q8WV07 137 aa11.87□□□□□ -0.51
CCDC28A-203ENST00000617445 MAP1LC3AQ9H492 121 aa11.87□□□□□ -0.51
CCDC28A-203ENST00000617445 TGIF2-C20orf24A0A0A6YYL0 155 aa11.86□□□□□ -0.51
CCDC28A-203ENST00000617445 LINC01600Q96MT4 127 aa11.86□□□□□ -0.51
CCDC28A-203ENST00000617445 NDUFA1O15239 70 aa11.85□□□□□ -0.51
CCDC28A-203ENST00000617445 TMEM141Q96I45 108 aa11.85□□□□□ -0.51
CCDC28A-203ENST00000617445 K7EMI3 77 aa11.84□□□□□ -0.51
CCDC28A-203ENST00000617445 RPL18AQ02543 176 aaKnown RBP11.84□□□□□ -0.51
CCDC28A-203ENST00000617445 REG3GQ6UW15 175 aa11.84□□□□□ -0.51
CCDC28A-203ENST00000617445 Q8N8P6 123 aa11.84□□□□□ -0.51
CCDC28A-203ENST00000617445 IGLV4-3A0A075B6K6 122 aa11.83□□□□□ -0.52
CCDC28A-203ENST00000617445 TRAV9-1A0A075B6T8 112 aa11.83□□□□□ -0.52
CCDC28A-203ENST00000617445 A0A087WZ39 114 aa11.83□□□□□ -0.52
CCDC28A-203ENST00000617445 A0A1W2PNN7 141 aa11.83□□□□□ -0.52
CCDC28A-203ENST00000617445 SRSF9Q13242 221 aaKnown RBP eCLIP11.83□□□□□ -0.52
CCDC28A-203ENST00000617445 C9orf116Q5BN46 136 aaPredicted RBP11.83□□□□□ -0.52
CCDC28A-203ENST00000617445 LOC389332A0A1B0GUA5 103 aa11.82□□□□□ -0.52
CCDC28A-203ENST00000617445 NPSP0C0P6 89 aa11.82□□□□□ -0.52
CCDC28A-203ENST00000617445 ORMDL2Q53FV1 153 aa11.82□□□□□ -0.52
CCDC28A-203ENST00000617445 C10orf91Q5T1B1 145 aa11.82□□□□□ -0.52
CCDC28A-203ENST00000617445 TEX43Q6ZNM6 134 aa11.82□□□□□ -0.52
CCDC28A-203ENST00000617445 CYSLTR1Q9Y271 337 aa11.82□□□□□ -0.52
CCDC28A-203ENST00000617445 TLX1NBP0CAT3 122 aa11.81□□□□□ -0.52
CCDC28A-203ENST00000617445 LINC00242Q5T6M2 205 aa11.81□□□□□ -0.52
CCDC28A-203ENST00000617445 LINC01561Q8N1V8 128 aa11.81□□□□□ -0.52
CCDC28A-203ENST00000617445 C2orf88Q9BSF0 95 aa11.81□□□□□ -0.52
CCDC28A-203ENST00000617445 A0A0J9YXV3 536 aa11.8□□□□□ -0.52
CCDC28A-203ENST00000617445 G0S2P27469 103 aa11.8□□□□□ -0.52
CCDC28A-203ENST00000617445 Q6ZN92 141 aa11.8□□□□□ -0.52
CCDC28A-203ENST00000617445 HMCN2Q8NDA2 5059 aa11.8□□□□□ -0.52
CCDC28A-203ENST00000617445 S100PP25815 95 aa11.79□□□□□ -0.52
CCDC28A-203ENST00000617445 C2orf66Q6UXQ4 117 aa11.79□□□□□ -0.52
CCDC28A-203ENST00000617445 NXT2Q9NPJ8 142 aaKnown RBP11.79□□□□□ -0.52
CCDC28A-203ENST00000617445 CARHSP1Q9Y2V2 147 aaKnown RBP11.79□□□□□ -0.52
CCDC28A-203ENST00000617445 UBE2D1P51668 147 aa11.78□□□□□ -0.52
CCDC28A-203ENST00000617445 UNQ6190/PRO20217Q6UXQ8 127 aa11.78□□□□□ -0.52
CCDC28A-203ENST00000617445 VCX2Q9H322 139 aa11.78□□□□□ -0.52
CCDC28A-203ENST00000617445 TRBV30A0A0K0K1B3 111 aa11.77□□□□□ -0.53
CCDC28A-203ENST00000617445 MT-ND6P03923 174 aa11.77□□□□□ -0.53
CCDC28A-203ENST00000617445 KIAA0087Q14695 138 aa11.77□□□□□ -0.53
CCDC28A-203ENST00000617445 RHEBQ15382 184 aa11.77□□□□□ -0.53
CCDC28A-203ENST00000617445 PAPPA-AS1Q5QFB9 102 aa11.77□□□□□ -0.53
CCDC28A-203ENST00000617445 C10orf25Q5T742 122 aa11.77□□□□□ -0.53
CCDC28A-203ENST00000617445 AMELXQ99217 191 aa11.77□□□□□ -0.53
CCDC28A-203ENST00000617445 C6orf48Q9UBA6 75 aa11.77□□□□□ -0.53
CCDC28A-203ENST00000617445 PSORS1C2Q9UIG4 136 aa11.76□□□□□ -0.53
CCDC28A-203ENST00000617445 IGIPA6NJ69 53 aa11.74□□□□□ -0.53
CCDC28A-203ENST00000617445 KRTAP10-8P60410 259 aa11.74□□□□□ -0.53
CCDC28A-203ENST00000617445 SEC11AP67812 179 aa11.74□□□□□ -0.53
CCDC28A-203ENST00000617445 COX19Q49B96 90 aa11.74□□□□□ -0.53
CCDC28A-203ENST00000617445 FAM19A3Q7Z5A8 133 aa11.74□□□□□ -0.53
CCDC28A-203ENST00000617445 TNXBP22105 4242 aa11.73□□□□□ -0.53
CCDC28A-203ENST00000617445 LINC00173Q6ZV60 143 aa11.73□□□□□ -0.53
CCDC28A-203ENST00000617445 PHF5AQ7RTV0 110 aaKnown RBP11.73□□□□□ -0.53
CCDC28A-203ENST00000617445 PACRGQ96M98 296 aaPredicted RBP11.73□□□□□ -0.53
CCDC28A-203ENST00000617445 GNB1LQ9BYB4 327 aa11.73□□□□□ -0.53
CCDC28A-203ENST00000617445 RPS10P5Q9NQ39 176 aa11.73□□□□□ -0.53
CCDC28A-203ENST00000617445 NDUFC2-KCTD14E9PQ53 114 aa11.71□□□□□ -0.53
CCDC28A-203ENST00000617445 PRSS2P07478 247 aa11.71□□□□□ -0.53
CCDC28A-203ENST00000617445 GAGE2EQ4V326 116 aa11.71□□□□□ -0.53
CCDC28A-203ENST00000617445 C1orf137Q5JT78 98 aa11.71□□□□□ -0.53
CCDC28A-203ENST00000617445 TIMM17AQ99595 171 aa11.71□□□□□ -0.53
CCDC28A-203ENST00000617445 GAGE2DQ9UEU5 116 aa11.71□□□□□ -0.53
CCDC28A-203ENST00000617445 LINC01549A6NIU2 74 aa11.7□□□□□ -0.54
CCDC28A-203ENST00000617445 HERVK_113P63121 156 aa11.7□□□□□ -0.54
CCDC28A-203ENST00000617445 KIAA1644Q3SXP7 199 aa11.7□□□□□ -0.54
CCDC28A-203ENST00000617445 NDUFA5Q16718 116 aa11.69□□□□□ -0.54
CCDC28A-203ENST00000617445 ZC2HC1BQ5TFG8 222 aa11.69□□□□□ -0.54
CCDC28A-203ENST00000617445 C2orf82Q6UX34 121 aa11.69□□□□□ -0.54
CCDC28A-203ENST00000617445 TOMM6Q96B49 74 aa11.69□□□□□ -0.54
CCDC28A-203ENST00000617445 FAM168BA1KXE4 195 aa11.68□□□□□ -0.54
CCDC28A-203ENST00000617445 APOC3P02656 99 aa11.68□□□□□ -0.54
CCDC28A-203ENST00000617445 CKS1BP61024 79 aa11.68□□□□□ -0.54
CCDC28A-203ENST00000617445 C6orf226Q5I0X4 101 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms