RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.16□□□□□ -0.46
CDX1-202ENST00000616154 LINC01549A6NIU2 74 aa12.15□□□□□ -0.46
CDX1-202ENST00000616154 FGF6P10767 208 aa12.15□□□□□ -0.46
CDX1-202ENST00000616154 HNRNPA3P51991 378 aaKnown RBP12.15□□□□□ -0.46
CDX1-202ENST00000616154 TOMM6Q96B49 74 aa12.15□□□□□ -0.46
CDX1-202ENST00000616154 CSDC2Q9Y534 153 aaKnown RBP12.15□□□□□ -0.46
CDX1-202ENST00000616154 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.14□□□□□ -0.47
CDX1-202ENST00000616154 IGKV2-29A2NJV5 120 aaPredicted RBP12.14□□□□□ -0.47
CDX1-202ENST00000616154 NDUFA6P56556 154 aa12.14□□□□□ -0.47
CDX1-202ENST00000616154 CNBPP62633 177 aaKnown RBP12.14□□□□□ -0.47
CDX1-202ENST00000616154 RPL39P62891 51 aaKnown RBP12.14□□□□□ -0.47
CDX1-202ENST00000616154 C2orf66Q6UXQ4 117 aa12.14□□□□□ -0.47
CDX1-202ENST00000616154 SDIM1Q6ZPB5 146 aa12.14□□□□□ -0.47
CDX1-202ENST00000616154 TMEM18Q96B42 140 aa12.14□□□□□ -0.47
CDX1-202ENST00000616154 CYSLTR1Q9Y271 337 aa12.14□□□□□ -0.47
CDX1-202ENST00000616154 UBE2D4Q9Y2X8 147 aa12.14□□□□□ -0.47
CDX1-202ENST00000616154 PANO1I0J062 215 aa12.13□□□□□ -0.47
CDX1-202ENST00000616154 HSBP1O75506 76 aa12.13□□□□□ -0.47
CDX1-202ENST00000616154 HBDP02042 147 aa12.13□□□□□ -0.47
CDX1-202ENST00000616154 FAM104AQ969W3 186 aa12.13□□□□□ -0.47
CDX1-202ENST00000616154 PYGO1Q9Y3Y4 419 aa12.13□□□□□ -0.47
CDX1-202ENST00000616154 IGIPA6NJ69 53 aa12.12□□□□□ -0.47
CDX1-202ENST00000616154 PDZD11Q5EBL8 140 aa12.12□□□□□ -0.47
CDX1-202ENST00000616154 AMMECR1LQ6DCA0 310 aa12.12□□□□□ -0.47
CDX1-202ENST00000616154 SPANXA1Q9NS26 97 aa12.12□□□□□ -0.47
CDX1-202ENST00000616154 NPSP0C0P6 89 aa12.11□□□□□ -0.47
CDX1-202ENST00000616154 SMAGPQ0VAQ4 97 aa12.11□□□□□ -0.47
CDX1-202ENST00000616154 PMCHL1Q16048 86 aa12.11□□□□□ -0.47
CDX1-202ENST00000616154 PLA2G2DQ9UNK4 145 aa12.11□□□□□ -0.47
CDX1-202ENST00000616154 CIRBPQ14011 172 aaKnown RBP12.11□□□□□ -0.47
CDX1-202ENST00000616154 TIMM17AQ99595 171 aa12.11□□□□□ -0.47
CDX1-202ENST00000616154 UBR4Q5T4S7 5183 aa12.1□□□□□ -0.47
CDX1-202ENST00000616154 hDV102S1A0JD36 115 aa12.1□□□□□ -0.47
CDX1-202ENST00000616154 MRPS36P82909 103 aaKnown RBP12.1□□□□□ -0.47
CDX1-202ENST00000616154 ERASQ7Z444 233 aa12.1□□□□□ -0.47
CDX1-202ENST00000616154 FAM19A2Q8N3H0 131 aa12.1□□□□□ -0.47
CDX1-202ENST00000616154 OR5A1Q8NGJ0 315 aa12.1□□□□□ -0.47
CDX1-202ENST00000616154 PACRGQ96M98 296 aaPredicted RBP12.1□□□□□ -0.47
CDX1-202ENST00000616154 C15orf56Q8N910 161 aa12.09□□□□□ -0.47
CDX1-202ENST00000616154 CHCHD10Q8WYQ3 142 aaPredicted RBP12.09□□□□□ -0.47
CDX1-202ENST00000616154 GAGE12HA6NDE8 117 aa12.08□□□□□ -0.48
CDX1-202ENST00000616154 C5orf52A6NGY3 159 aa12.08□□□□□ -0.48
CDX1-202ENST00000616154 CDC42SE2Q9NRR3 84 aa12.08□□□□□ -0.48
CDX1-202ENST00000616154 IGLV4-3A0A075B6K6 122 aa12.07□□□□□ -0.48
CDX1-202ENST00000616154 SLPIP03973 132 aa12.07□□□□□ -0.48
CDX1-202ENST00000616154 S100A6P06703 90 aa12.07□□□□□ -0.48
CDX1-202ENST00000616154 HIST3H2BBQ8N257 126 aa12.07□□□□□ -0.48
CDX1-202ENST00000616154 TMEM141Q96I45 108 aa12.07□□□□□ -0.48
CDX1-202ENST00000616154 TMEM101Q96IK0 257 aa12.07□□□□□ -0.48
CDX1-202ENST00000616154 IGHV3-64A0A075B6Q5 118 aa12.06□□□□□ -0.48
CDX1-202ENST00000616154 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.06□□□□□ -0.48
CDX1-202ENST00000616154 FOXI1Q12951 378 aa12.06□□□□□ -0.48
CDX1-202ENST00000616154 CFAP161Q6P656 301 aa12.06□□□□□ -0.48
CDX1-202ENST00000616154 SCGB3A1Q96QR1 104 aa12.06□□□□□ -0.48
CDX1-202ENST00000616154 LINC00959A0A1B0GUT2 108 aa12.05□□□□□ -0.48
CDX1-202ENST00000616154 ATP5LO75964 103 aa12.05□□□□□ -0.48
CDX1-202ENST00000616154 Q6ZUT4 128 aa12.05□□□□□ -0.48
CDX1-202ENST00000616154 ZNF664Q8N3J9 261 aa12.05□□□□□ -0.48
CDX1-202ENST00000616154 AMELXQ99217 191 aa12.05□□□□□ -0.48
CDX1-202ENST00000616154 GVQW2A0A096LPI5 108 aaPredicted RBP12.04□□□□□ -0.48
CDX1-202ENST00000616154 IGKV3OR2-268A0A0C4DH90 116 aa12.04□□□□□ -0.48
CDX1-202ENST00000616154 MT1HL1P0DM35 61 aa12.04□□□□□ -0.48
CDX1-202ENST00000616154 SNRPEP62304 92 aaKnown RBP12.04□□□□□ -0.48
CDX1-202ENST00000616154 Q6ZRU5 148 aa12.04□□□□□ -0.48
CDX1-202ENST00000616154 LINC00173Q6ZV60 143 aa12.04□□□□□ -0.48
CDX1-202ENST00000616154 OPRPNQ99935 248 aaPredicted RBP12.04□□□□□ -0.48
CDX1-202ENST00000616154 LEPROTL1O95214 131 aa12.03□□□□□ -0.48
CDX1-202ENST00000616154 SPACA4Q8TDM5 124 aa12.03□□□□□ -0.48
CDX1-202ENST00000616154 TMA7Q9Y2S6 64 aaKnown RBP12.03□□□□□ -0.48
CDX1-202ENST00000616154 A0A087WYN8 130 aa12.02□□□□□ -0.49
CDX1-202ENST00000616154 IFITM10A6NMD0 228 aa12.02□□□□□ -0.49
CDX1-202ENST00000616154 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.02□□□□□ -0.49
CDX1-202ENST00000616154 CHTF8P0CG12 524 aa12.02□□□□□ -0.49
CDX1-202ENST00000616154 PAPPA-AS1Q5QFB9 102 aa12.02□□□□□ -0.49
CDX1-202ENST00000616154 HSPB8Q9UJY1 196 aa12.02□□□□□ -0.49
CDX1-202ENST00000616154 IFI27L1Q96BM0 104 aa12.01□□□□□ -0.49
CDX1-202ENST00000616154 CCL25O15444 150 aa12□□□□□ -0.49
CDX1-202ENST00000616154 CD164L2Q6UWJ8 174 aa12□□□□□ -0.49
CDX1-202ENST00000616154 DPH3Q96FX2 82 aa12□□□□□ -0.49
CDX1-202ENST00000616154 HIST1H2BLQ99880 126 aa12□□□□□ -0.49
CDX1-202ENST00000616154 FABP4P15090 132 aa11.99□□□□□ -0.49
CDX1-202ENST00000616154 XCL1P47992 114 aa11.99□□□□□ -0.49
CDX1-202ENST00000616154 Q6ZN92 141 aa11.99□□□□□ -0.49
CDX1-202ENST00000616154 PLAC8Q9NZF1 115 aa11.99□□□□□ -0.49
CDX1-202ENST00000616154 SS18Q15532 418 aa11.98□□□□□ -0.49
CDX1-202ENST00000616154 RNASE13Q5GAN3 156 aaKnown RBP11.98□□□□□ -0.49
CDX1-202ENST00000616154 TEX43Q6ZNM6 134 aa11.98□□□□□ -0.49
CDX1-202ENST00000616154 VCX2Q9H322 139 aa11.98□□□□□ -0.49
CDX1-202ENST00000616154 PMVKQ15126 192 aa11.97□□□□□ -0.49
CDX1-202ENST00000616154 FAM19A3Q7Z5A8 133 aa11.97□□□□□ -0.49
CDX1-202ENST00000616154 CST9LQ9H4G1 147 aa11.97□□□□□ -0.49
CDX1-202ENST00000616154 TNXBP22105 4242 aa11.97□□□□□ -0.49
CDX1-202ENST00000616154 TRAV12-1A0A0B4J245 112 aa11.96□□□□□ -0.49
CDX1-202ENST00000616154 IGHV1-58A0A0C4DH39 117 aa11.96□□□□□ -0.49
CDX1-202ENST00000616154 S100A2P29034 98 aa11.96□□□□□ -0.49
CDX1-202ENST00000616154 HIGD2BQ4VC39 106 aa11.96□□□□□ -0.49
CDX1-202ENST00000616154 ZC2HC1BQ5TFG8 222 aa11.96□□□□□ -0.49
CDX1-202ENST00000616154 UBE2D1P51668 147 aa11.95□□□□□ -0.5
CDX1-202ENST00000616154 COX6A2Q02221 97 aa11.94□□□□□ -0.5
CDX1-202ENST00000616154 C7orf33Q8WU49 177 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms