RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 RNF151Q2KHN1 245 aa9.62□□□□□ -0.87
SHKBP1-228ENST00000602239 C10orf25Q5T742 122 aa9.62□□□□□ -0.87
SHKBP1-228ENST00000602239 C1orf137Q5JT78 98 aa9.61□□□□□ -0.87
SHKBP1-228ENST00000602239 NAT8Q9UHE5 227 aa9.61□□□□□ -0.87
SHKBP1-228ENST00000602239 FAM168BA1KXE4 195 aa9.6□□□□□ -0.87
SHKBP1-228ENST00000602239 TCAPO15273 167 aa9.6□□□□□ -0.87
SHKBP1-228ENST00000602239 UNQ6190/PRO20217Q6UXQ8 127 aa9.6□□□□□ -0.87
SHKBP1-228ENST00000602239 KRTAP11-1Q8IUC1 163 aa9.6□□□□□ -0.87
SHKBP1-228ENST00000602239 OR10D4PQ8NGN7 298 aa9.6□□□□□ -0.87
SHKBP1-228ENST00000602239 ORAOV1Q8WV07 137 aa9.6□□□□□ -0.87
SHKBP1-228ENST00000602239 SMIM2Q9BVW6 85 aa9.6□□□□□ -0.87
SHKBP1-228ENST00000602239 MRPL35Q9NZE8 188 aaKnown RBP9.6□□□□□ -0.87
SHKBP1-228ENST00000602239 D6R8Y8 96 aa9.59□□□□□ -0.87
SHKBP1-228ENST00000602239 NPYP01303 97 aa9.59□□□□□ -0.87
SHKBP1-228ENST00000602239 MRPL54Q6P161 138 aaKnown RBP9.59□□□□□ -0.87
SHKBP1-228ENST00000602239 A0A1B0GW15 77 aa9.58□□□□□ -0.88
SHKBP1-228ENST00000602239 MRPS36P82909 103 aaKnown RBP9.58□□□□□ -0.88
SHKBP1-228ENST00000602239 SPANXA1Q9NS26 97 aa9.58□□□□□ -0.88
SHKBP1-228ENST00000602239 A0A1B0GXF2 115 aa9.57□□□□□ -0.88
SHKBP1-228ENST00000602239 IFITM10A6NMD0 228 aa9.57□□□□□ -0.88
SHKBP1-228ENST00000602239 A0A087WZ39 114 aa9.56□□□□□ -0.88
SHKBP1-228ENST00000602239 NDUFA1O15239 70 aa9.56□□□□□ -0.88
SHKBP1-228ENST00000602239 IGLV7-43P04211 117 aa9.56□□□□□ -0.88
SHKBP1-228ENST00000602239 HBBP68871 147 aa9.56□□□□□ -0.88
SHKBP1-228ENST00000602239 KRTAP7-1Q8IUC3 87 aa9.56□□□□□ -0.88
SHKBP1-228ENST00000602239 PRR26Q8N8Z3 221 aa9.56□□□□□ -0.88
SHKBP1-228ENST00000602239 IMMP2LQ96T52 175 aa9.56□□□□□ -0.88
SHKBP1-228ENST00000602239 C6orf48Q9UBA6 75 aa9.56□□□□□ -0.88
SHKBP1-228ENST00000602239 A0A1B0GVG6 124 aa9.55□□□□□ -0.88
SHKBP1-228ENST00000602239 F8WDY8 70 aa9.55□□□□□ -0.88
SHKBP1-228ENST00000602239 TLX1NBP0CAT3 122 aa9.55□□□□□ -0.88
SHKBP1-228ENST00000602239 KIAA0087Q14695 138 aa9.55□□□□□ -0.88
SHKBP1-228ENST00000602239 PEA15Q15121 130 aa9.55□□□□□ -0.88
SHKBP1-228ENST00000602239 GAGE2EQ4V326 116 aa9.55□□□□□ -0.88
SHKBP1-228ENST00000602239 GAGE2DQ9UEU5 116 aa9.55□□□□□ -0.88
SHKBP1-228ENST00000602239 LPAP08519 4548 aa9.54□□□□□ -0.88
SHKBP1-228ENST00000602239 F8W036 122 aa9.54□□□□□ -0.88
SHKBP1-228ENST00000602239 FAM19A5Q7Z5A7 132 aaPredicted RBP9.54□□□□□ -0.88
SHKBP1-228ENST00000602239 PPBPP02775 128 aa9.53□□□□□ -0.88
SHKBP1-228ENST00000602239 LINC00242Q5T6M2 205 aa9.53□□□□□ -0.88
SHKBP1-228ENST00000602239 DIRC1Q969H9 104 aa9.53□□□□□ -0.88
SHKBP1-228ENST00000602239 IGLV4-3A0A075B6K6 122 aa9.52□□□□□ -0.89
SHKBP1-228ENST00000602239 S100A8P05109 93 aa9.52□□□□□ -0.89
SHKBP1-228ENST00000602239 C2orf82Q6UX34 121 aa9.52□□□□□ -0.89
SHKBP1-228ENST00000602239 TMEM136Q6ZRR5 245 aa9.52□□□□□ -0.89
SHKBP1-228ENST00000602239 SMDT1Q9H4I9 107 aa9.52□□□□□ -0.89
SHKBP1-228ENST00000602239 TGIF2-C20orf24A0A0A6YYL0 155 aa9.51□□□□□ -0.89
SHKBP1-228ENST00000602239 RAB5AP20339 215 aa9.51□□□□□ -0.89
SHKBP1-228ENST00000602239 ORMDL3Q8N138 153 aa9.51□□□□□ -0.89
SHKBP1-228ENST00000602239 PRELID3AQ96N28 172 aa9.51□□□□□ -0.89
SHKBP1-228ENST00000602239 PYGO1Q9Y3Y4 419 aa9.51□□□□□ -0.89
SHKBP1-228ENST00000602239 H0Y9J4 135 aa9.5□□□□□ -0.89
SHKBP1-228ENST00000602239 IFI27P40305 119 aaPredicted RBP9.5□□□□□ -0.89
SHKBP1-228ENST00000602239 ZC2HC1BQ5TFG8 222 aa9.5□□□□□ -0.89
SHKBP1-228ENST00000602239 LOC389332A0A1B0GUA5 103 aa9.49□□□□□ -0.89
SHKBP1-228ENST00000602239 PRSS47A8MTI9 375 aa9.48□□□□□ -0.89
SHKBP1-228ENST00000602239 KRTAP1-4P0C5Y4 121 aa9.48□□□□□ -0.89
SHKBP1-228ENST00000602239 C9orf129Q5T035 196 aaKnown RBP9.48□□□□□ -0.89
SHKBP1-228ENST00000602239 TMEM141Q96I45 108 aa9.48□□□□□ -0.89
SHKBP1-228ENST00000602239 M0QXV9 152 aa9.47□□□□□ -0.89
SHKBP1-228ENST00000602239 UBE2D1P51668 147 aa9.47□□□□□ -0.89
SHKBP1-228ENST00000602239 TRBV30A0A0K0K1B3 111 aa9.46□□□□□ -0.9
SHKBP1-228ENST00000602239 NDUFC2-KCTD14E9PQ53 114 aa9.46□□□□□ -0.9
SHKBP1-228ENST00000602239 UBE2BP63146 152 aa9.46□□□□□ -0.9
SHKBP1-228ENST00000602239 LINC00173Q6ZV60 143 aa9.46□□□□□ -0.9
SHKBP1-228ENST00000602239 ATP5L2Q7Z4Y8 100 aa9.46□□□□□ -0.9
SHKBP1-228ENST00000602239 TEX43Q6ZNM6 134 aa9.45□□□□□ -0.9
SHKBP1-228ENST00000602239 PACRGQ96M98 296 aaPredicted RBP9.45□□□□□ -0.9
SHKBP1-228ENST00000602239 AMELXQ99217 191 aa9.44□□□□□ -0.9
SHKBP1-228ENST00000602239 IGLV1-50A0A075B6I6 118 aa9.43□□□□□ -0.9
SHKBP1-228ENST00000602239 C2orf66Q6UXQ4 117 aa9.43□□□□□ -0.9
SHKBP1-228ENST00000602239 LINC01561Q8N1V8 128 aa9.43□□□□□ -0.9
SHKBP1-228ENST00000602239 LINC00469Q8N7U9 141 aa9.43□□□□□ -0.9
SHKBP1-228ENST00000602239 Q8N8P6 123 aa9.43□□□□□ -0.9
SHKBP1-228ENST00000602239 MAP1LC3AQ9H492 121 aa9.43□□□□□ -0.9
SHKBP1-228ENST00000602239 C2orf88Q9BSF0 95 aa9.42□□□□□ -0.9
SHKBP1-228ENST00000602239 VCX2Q9H322 139 aa9.42□□□□□ -0.9
SHKBP1-228ENST00000602239 TOMM7Q9P0U1 55 aa9.42□□□□□ -0.9
SHKBP1-228ENST00000602239 CYSLTR1Q9Y271 337 aa9.42□□□□□ -0.9
SHKBP1-228ENST00000602239 LAMTOR2Q9Y2Q5 125 aa9.42□□□□□ -0.9
SHKBP1-228ENST00000602239 IGIPA6NJ69 53 aa9.41□□□□□ -0.9
SHKBP1-228ENST00000602239 Q6ZN92 141 aa9.41□□□□□ -0.9
SHKBP1-228ENST00000602239 PRSS2P07478 247 aa9.4□□□□□ -0.9
SHKBP1-228ENST00000602239 C6orf226Q5I0X4 101 aa9.4□□□□□ -0.9
SHKBP1-228ENST00000602239 C22orf24Q9Y442 160 aa9.4□□□□□ -0.9
SHKBP1-228ENST00000602239 CKS1BP61024 79 aa9.39□□□□□ -0.91
SHKBP1-228ENST00000602239 XAGE1AQ9HD64 81 aa9.39□□□□□ -0.91
SHKBP1-228ENST00000602239 ZNF861PO60384 105 aa9.38□□□□□ -0.91
SHKBP1-228ENST00000602239 ORMDL2Q53FV1 153 aa9.38□□□□□ -0.91
SHKBP1-228ENST00000602239 FAM19A3Q7Z5A8 133 aa9.38□□□□□ -0.91
SHKBP1-228ENST00000602239 ALKBH7Q9BT30 221 aaPredicted RBP9.38□□□□□ -0.91
SHKBP1-228ENST00000602239 CDKN2A-AS1Q9UH64 79 aa9.38□□□□□ -0.91
SHKBP1-228ENST00000602239 Q8IZM0 81 aa9.37□□□□□ -0.91
SHKBP1-228ENST00000602239 ANAPC16Q96DE5 110 aa9.37□□□□□ -0.91
SHKBP1-228ENST00000602239 MT-ND4LP03901 98 aa9.36□□□□□ -0.91
SHKBP1-228ENST00000602239 PRR4Q16378 134 aa9.36□□□□□ -0.91
SHKBP1-228ENST00000602239 NPSP0C0P6 89 aa9.35□□□□□ -0.91
SHKBP1-228ENST00000602239 RPL13AP40429 203 aaKnown RBP9.35□□□□□ -0.91
SHKBP1-228ENST00000602239 PNRC1Q12796 327 aaPredicted RBP9.35□□□□□ -0.91
SHKBP1-228ENST00000602239 K7EMI3 77 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 184.7 ms