RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 IGLV10-54A0A075B6I4 117 aa6.74□□□□□ -1.33
LIG1-213ENST00000596672 COL5A1-AS1Q5SY13 56 aa6.74□□□□□ -1.33
LIG1-213ENST00000596672 C1orf43Q9BWL3 253 aa6.74□□□□□ -1.33
LIG1-213ENST00000596672 LAMTOR2Q9Y2Q5 125 aa6.74□□□□□ -1.33
LIG1-213ENST00000596672 PAM16Q9Y3D7 125 aa6.74□□□□□ -1.33
LIG1-213ENST00000596672 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.74□□□□□ -1.33
LIG1-213ENST00000596672 IGHV1-24A0A0C4DH33 117 aa6.73□□□□□ -1.33
LIG1-213ENST00000596672 MIAQ16674 131 aa6.73□□□□□ -1.33
LIG1-213ENST00000596672 SPATA45Q537H7 98 aa6.73□□□□□ -1.33
LIG1-213ENST00000596672 SDIM1Q6ZPB5 146 aa6.73□□□□□ -1.33
LIG1-213ENST00000596672 TRBV25-1A0A075B6N4 114 aa6.72□□□□□ -1.33
LIG1-213ENST00000596672 C3orf79P0CE67 100 aa6.72□□□□□ -1.33
LIG1-213ENST00000596672 Q8N8P6 123 aa6.72□□□□□ -1.33
LIG1-213ENST00000596672 ST20Q9HBF5 79 aa6.72□□□□□ -1.33
LIG1-213ENST00000596672 TNXBP22105 4242 aa6.72□□□□□ -1.33
LIG1-213ENST00000596672 PRSS47A8MTI9 375 aa6.71□□□□□ -1.34
LIG1-213ENST00000596672 PPP1R17O96001 155 aa6.71□□□□□ -1.34
LIG1-213ENST00000596672 CRPP02741 224 aa6.71□□□□□ -1.34
LIG1-213ENST00000596672 SUMO2P61956 95 aaKnown RBP6.71□□□□□ -1.34
LIG1-213ENST00000596672 REG3AQ06141 175 aa6.71□□□□□ -1.34
LIG1-213ENST00000596672 C9orf163Q8N9P6 203 aa6.71□□□□□ -1.34
LIG1-213ENST00000596672 C20orf78Q9BR46 151 aa6.71□□□□□ -1.34
LIG1-213ENST00000596672 NXT2Q9NPJ8 142 aaKnown RBP6.71□□□□□ -1.34
LIG1-213ENST00000596672 AP5S1Q9NUS5 200 aa6.71□□□□□ -1.34
LIG1-213ENST00000596672 A0A1B0GUV1 79 aa6.7□□□□□ -1.34
LIG1-213ENST00000596672 KRTAP29-1A8MX34 341 aaPredicted RBP6.7□□□□□ -1.34
LIG1-213ENST00000596672 H7C1H1 209 aa6.7□□□□□ -1.34
LIG1-213ENST00000596672 IGLC3P0DOY3 106 aa6.7□□□□□ -1.34
LIG1-213ENST00000596672 TMEM97Q5BJF2 176 aa6.7□□□□□ -1.34
LIG1-213ENST00000596672 TMEM243Q9BU79 118 aa6.7□□□□□ -1.34
LIG1-213ENST00000596672 SMIM2Q9BVW6 85 aa6.7□□□□□ -1.34
LIG1-213ENST00000596672 HSPB8Q9UJY1 196 aa6.7□□□□□ -1.34
LIG1-213ENST00000596672 HSBP1L1C9JCN9 74 aa6.69□□□□□ -1.34
LIG1-213ENST00000596672 DLEU1O43261 78 aa6.69□□□□□ -1.34
LIG1-213ENST00000596672 PLA2G1BP04054 148 aaKnown RBP6.69□□□□□ -1.34
LIG1-213ENST00000596672 ZNF25P17030 456 aaPredicted RBP6.69□□□□□ -1.34
LIG1-213ENST00000596672 Q6ZN92 141 aa6.69□□□□□ -1.34
LIG1-213ENST00000596672 C15orf56Q8N910 161 aa6.69□□□□□ -1.34
LIG1-213ENST00000596672 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.68□□□□□ -1.34
LIG1-213ENST00000596672 TRBV6-5A0A0K0K1A5 114 aa6.68□□□□□ -1.34
LIG1-213ENST00000596672 IGKV2-29A2NJV5 120 aaPredicted RBP6.68□□□□□ -1.34
LIG1-213ENST00000596672 SDHAF1A6NFY7 115 aa6.68□□□□□ -1.34
LIG1-213ENST00000596672 LINC01546A6NGU7 62 aa6.68□□□□□ -1.34
LIG1-213ENST00000596672 VCYO14598 125 aa6.68□□□□□ -1.34
LIG1-213ENST00000596672 CHTF8P0CG12 524 aa6.68□□□□□ -1.34
LIG1-213ENST00000596672 POLR2KP53803 58 aaKnown RBP6.68□□□□□ -1.34
LIG1-213ENST00000596672 CIRBPQ14011 172 aaKnown RBP6.68□□□□□ -1.34
LIG1-213ENST00000596672 PET117Q6UWS5 81 aa6.68□□□□□ -1.34
LIG1-213ENST00000596672 LINC00173Q6ZV60 143 aa6.68□□□□□ -1.34
LIG1-213ENST00000596672 MAP1LC3CQ9BXW4 147 aa6.68□□□□□ -1.34
LIG1-213ENST00000596672 A0A096LNJ9 63 aa6.67□□□□□ -1.34
LIG1-213ENST00000596672 LEPROTL1O95214 131 aa6.67□□□□□ -1.34
LIG1-213ENST00000596672 FCER1GP30273 86 aa6.67□□□□□ -1.34
LIG1-213ENST00000596672 CNBPP62633 177 aaKnown RBP6.67□□□□□ -1.34
LIG1-213ENST00000596672 RPL32P62910 135 aaKnown RBP6.67□□□□□ -1.34
LIG1-213ENST00000596672 C14orf177Q52M58 125 aa6.67□□□□□ -1.34
LIG1-213ENST00000596672 DGAT2L7PQ6IED9 249 aa6.67□□□□□ -1.34
LIG1-213ENST00000596672 PMCHL2Q9BQD1 86 aa6.67□□□□□ -1.34
LIG1-213ENST00000596672 GAGE12HA6NDE8 117 aa6.66□□□□□ -1.34
LIG1-213ENST00000596672 TSHBP01222 138 aa6.66□□□□□ -1.34
LIG1-213ENST00000596672 HBDP02042 147 aa6.66□□□□□ -1.34
LIG1-213ENST00000596672 COTL1Q14019 142 aa6.66□□□□□ -1.34
LIG1-213ENST00000596672 ORAOV1Q8WV07 137 aa6.66□□□□□ -1.34
LIG1-213ENST00000596672 TRAV8-4A0A0B4J246 113 aa6.65□□□□□ -1.34
LIG1-213ENST00000596672 IGKV3OR2-268A0A0C4DH90 116 aa6.65□□□□□ -1.34
LIG1-213ENST00000596672 TRBV27A0A0K0K1C4 114 aa6.65□□□□□ -1.34
LIG1-213ENST00000596672 hDV102S1A0JD36 115 aa6.65□□□□□ -1.34
LIG1-213ENST00000596672 SYS1-DBNDD2H3BUS1 97 aa6.65□□□□□ -1.34
LIG1-213ENST00000596672 I3L3M4 83 aa6.65□□□□□ -1.34
LIG1-213ENST00000596672 G0S2P27469 103 aa6.65□□□□□ -1.34
LIG1-213ENST00000596672 BATFQ16520 125 aa6.65□□□□□ -1.34
LIG1-213ENST00000596672 ORMDL2Q53FV1 153 aa6.65□□□□□ -1.34
LIG1-213ENST00000596672 KIR2DL4Q99706 377 aa6.65□□□□□ -1.34
LIG1-213ENST00000596672 LRP2P98164 4655 aa6.64□□□□□ -1.35
LIG1-213ENST00000596672 J3QL48 77 aa6.64□□□□□ -1.35
LIG1-213ENST00000596672 MT1HL1P0DM35 61 aa6.64□□□□□ -1.35
LIG1-213ENST00000596672 FGF6P10767 208 aa6.64□□□□□ -1.35
LIG1-213ENST00000596672 FOXI1Q12951 378 aa6.64□□□□□ -1.35
LIG1-213ENST00000596672 H0Y8G0 127 aa6.63□□□□□ -1.35
LIG1-213ENST00000596672 K7EMI3 77 aa6.63□□□□□ -1.35
LIG1-213ENST00000596672 RPL37AP61513 92 aaKnown RBP6.63□□□□□ -1.35
LIG1-213ENST00000596672 HIGD2BQ4VC39 106 aa6.63□□□□□ -1.35
LIG1-213ENST00000596672 SLC25A34Q6PIV7 304 aa6.63□□□□□ -1.35
LIG1-213ENST00000596672 CHCHD10Q8WYQ3 142 aaPredicted RBP6.63□□□□□ -1.35
LIG1-213ENST00000596672 FAM104AQ969W3 186 aa6.63□□□□□ -1.35
LIG1-213ENST00000596672 LINC00526Q96FQ7 95 aa6.63□□□□□ -1.35
LIG1-213ENST00000596672 A0A087WYN8 130 aa6.62□□□□□ -1.35
LIG1-213ENST00000596672 SPACA4Q8TDM5 124 aa6.62□□□□□ -1.35
LIG1-213ENST00000596672 TOMM6Q96B49 74 aa6.62□□□□□ -1.35
LIG1-213ENST00000596672 IFI27L1Q96BM0 104 aa6.62□□□□□ -1.35
LIG1-213ENST00000596672 SCGB3A1Q96QR1 104 aa6.62□□□□□ -1.35
LIG1-213ENST00000596672 CBY1Q9Y3M2 126 aa6.62□□□□□ -1.35
LIG1-213ENST00000596672 UBE2L6O14933 153 aa6.61□□□□□ -1.35
LIG1-213ENST00000596672 RPL39P62891 51 aaKnown RBP6.61□□□□□ -1.35
LIG1-213ENST00000596672 LINC01545Q5VT33 79 aa6.61□□□□□ -1.35
LIG1-213ENST00000596672 C2orf66Q6UXQ4 117 aa6.61□□□□□ -1.35
LIG1-213ENST00000596672 CYSLTR1Q9Y271 337 aa6.61□□□□□ -1.35
LIG1-213ENST00000596672 LINC00959A0A1B0GUT2 108 aa6.6□□□□□ -1.35
LIG1-213ENST00000596672 ATP5LO75964 103 aa6.6□□□□□ -1.35
LIG1-213ENST00000596672 COX6A2Q02221 97 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 208 ms