RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 TRAV9-1A0A075B6T8 112 aa9.59□□□□□ -0.87
TRIM28-205ENST00000595028 A0A087WYN8 130 aa9.59□□□□□ -0.87
TRIM28-205ENST00000595028 IFITM10A6NMD0 228 aa9.59□□□□□ -0.87
TRIM28-205ENST00000595028 APOC3P02656 99 aa9.59□□□□□ -0.87
TRIM28-205ENST00000595028 Q8N8P6 123 aa9.59□□□□□ -0.87
TRIM28-205ENST00000595028 PKIGQ9Y2B9 76 aa9.59□□□□□ -0.87
TRIM28-205ENST00000595028 IGKV2-24A0A0C4DH68 120 aa9.58□□□□□ -0.88
TRIM28-205ENST00000595028 SYCNQ0VAF6 134 aa9.58□□□□□ -0.88
TRIM28-205ENST00000595028 C10orf91Q5T1B1 145 aa9.58□□□□□ -0.88
TRIM28-205ENST00000595028 C5orf38Q86SI9 138 aa9.58□□□□□ -0.88
TRIM28-205ENST00000595028 PLAC8Q9NZF1 115 aa9.58□□□□□ -0.88
TRIM28-205ENST00000595028 PYGO1Q9Y3Y4 419 aa9.58□□□□□ -0.88
TRIM28-205ENST00000595028 A0A096LNI7 61 aa9.57□□□□□ -0.88
TRIM28-205ENST00000595028 SVBPQ8N300 66 aa9.57□□□□□ -0.88
TRIM28-205ENST00000595028 DPH3Q96FX2 82 aa9.57□□□□□ -0.88
TRIM28-205ENST00000595028 IGLV4-69A0A075B6H9 119 aa9.56□□□□□ -0.88
TRIM28-205ENST00000595028 IGLV4-3A0A075B6K6 122 aa9.56□□□□□ -0.88
TRIM28-205ENST00000595028 SNAPINO95295 136 aa9.56□□□□□ -0.88
TRIM28-205ENST00000595028 APOMO95445 188 aa9.56□□□□□ -0.88
TRIM28-205ENST00000595028 MAJINQ3KP22 176 aa9.56□□□□□ -0.88
TRIM28-205ENST00000595028 CYSLTR1Q9Y271 337 aa9.56□□□□□ -0.88
TRIM28-205ENST00000595028 IGHV3OR16-9A0A0B4J2B5 98 aa9.55□□□□□ -0.88
TRIM28-205ENST00000595028 K7EMI3 77 aa9.55□□□□□ -0.88
TRIM28-205ENST00000595028 S100PP25815 95 aa9.55□□□□□ -0.88
TRIM28-205ENST00000595028 SPAG11BQ08648 103 aa9.55□□□□□ -0.88
TRIM28-205ENST00000595028 ORMDL2Q53FV1 153 aa9.55□□□□□ -0.88
TRIM28-205ENST00000595028 C2orf66Q6UXQ4 117 aa9.55□□□□□ -0.88
TRIM28-205ENST00000595028 Q6ZRU5 148 aa9.55□□□□□ -0.88
TRIM28-205ENST00000595028 TMEM141Q96I45 108 aa9.55□□□□□ -0.88
TRIM28-205ENST00000595028 C2orf48Q96LS8 159 aa9.55□□□□□ -0.88
TRIM28-205ENST00000595028 NXT2Q9NPJ8 142 aaKnown RBP9.55□□□□□ -0.88
TRIM28-205ENST00000595028 RHEBQ15382 184 aa9.54□□□□□ -0.88
TRIM28-205ENST00000595028 OR10D4PQ8NGN7 298 aa9.54□□□□□ -0.88
TRIM28-205ENST00000595028 CAMK2N2Q96S95 79 aa9.54□□□□□ -0.88
TRIM28-205ENST00000595028 RPS10P5Q9NQ39 176 aa9.54□□□□□ -0.88
TRIM28-205ENST00000595028 TGIF2-C20orf24A0A0A6YYL0 155 aa9.53□□□□□ -0.88
TRIM28-205ENST00000595028 KIAA1644Q3SXP7 199 aa9.53□□□□□ -0.88
TRIM28-205ENST00000595028 ORAOV1Q8WV07 137 aa9.53□□□□□ -0.88
TRIM28-205ENST00000595028 GNB1LQ9BYB4 327 aa9.53□□□□□ -0.88
TRIM28-205ENST00000595028 LINC00474Q9P2X8 69 aa9.53□□□□□ -0.88
TRIM28-205ENST00000595028 HNRNPA3P51991 378 aaKnown RBP9.52□□□□□ -0.89
TRIM28-205ENST00000595028 TEX43Q6ZNM6 134 aa9.52□□□□□ -0.89
TRIM28-205ENST00000595028 STPG4Q8N801 248 aa9.52□□□□□ -0.89
TRIM28-205ENST00000595028 LOC107984640A0A0U1RRK4 108 aa9.51□□□□□ -0.89
TRIM28-205ENST00000595028 NPSP0C0P6 89 aa9.51□□□□□ -0.89
TRIM28-205ENST00000595028 LINC00242Q5T6M2 205 aa9.51□□□□□ -0.89
TRIM28-205ENST00000595028 Q6ZN92 141 aa9.51□□□□□ -0.89
TRIM28-205ENST00000595028 LINC00173Q6ZV60 143 aa9.51□□□□□ -0.89
TRIM28-205ENST00000595028 C7orf33Q8WU49 177 aa9.51□□□□□ -0.89
TRIM28-205ENST00000595028 C2orf88Q9BSF0 95 aa9.51□□□□□ -0.89
TRIM28-205ENST00000595028 IGIPA6NJ69 53 aa9.5□□□□□ -0.89
TRIM28-205ENST00000595028 UBE2D1P51668 147 aa9.5□□□□□ -0.89
TRIM28-205ENST00000595028 PTTG1IPP53801 180 aa9.5□□□□□ -0.89
TRIM28-205ENST00000595028 COX19Q49B96 90 aa9.5□□□□□ -0.89
TRIM28-205ENST00000595028 AMELXQ99217 191 aa9.5□□□□□ -0.89
TRIM28-205ENST00000595028 LRP2P98164 4655 aa9.49□□□□□ -0.89
TRIM28-205ENST00000595028 A0A087WZ39 114 aa9.49□□□□□ -0.89
TRIM28-205ENST00000595028 MT-ND6P03923 174 aa9.49□□□□□ -0.89
TRIM28-205ENST00000595028 F8WDY8 70 aa9.48□□□□□ -0.89
TRIM28-205ENST00000595028 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.48□□□□□ -0.89
TRIM28-205ENST00000595028 G0S2P27469 103 aa9.48□□□□□ -0.89
TRIM28-205ENST00000595028 GAGE2BQ13066 116 aa9.48□□□□□ -0.89
TRIM28-205ENST00000595028 ZC2HC1BQ5TFG8 222 aa9.48□□□□□ -0.89
TRIM28-205ENST00000595028 TIMM17AQ99595 171 aa9.48□□□□□ -0.89
TRIM28-205ENST00000595028 ALKBH7Q9BT30 221 aaPredicted RBP9.48□□□□□ -0.89
TRIM28-205ENST00000595028 MRPL35Q9NZE8 188 aaKnown RBP9.48□□□□□ -0.89
TRIM28-205ENST00000595028 NDUFA1O15239 70 aa9.47□□□□□ -0.89
TRIM28-205ENST00000595028 ATP6V1G1O75348 118 aa9.47□□□□□ -0.89
TRIM28-205ENST00000595028 RNF151Q2KHN1 245 aa9.47□□□□□ -0.89
TRIM28-205ENST00000595028 TOMM6Q96B49 74 aa9.47□□□□□ -0.89
TRIM28-205ENST00000595028 MRPL18Q9H0U6 180 aaKnown RBP9.47□□□□□ -0.89
TRIM28-205ENST00000595028 VCX2Q9H322 139 aa9.47□□□□□ -0.89
TRIM28-205ENST00000595028 A0A0J9YXV3 536 aa9.46□□□□□ -0.9
TRIM28-205ENST00000595028 OXTP01178 125 aa9.46□□□□□ -0.9
TRIM28-205ENST00000595028 RPL18AQ02543 176 aaKnown RBP9.46□□□□□ -0.9
TRIM28-205ENST00000595028 FAM19A3Q7Z5A8 133 aa9.46□□□□□ -0.9
TRIM28-205ENST00000595028 LINC01546A6NGU7 62 aa9.45□□□□□ -0.9
TRIM28-205ENST00000595028 S100A1P23297 94 aa9.45□□□□□ -0.9
TRIM28-205ENST00000595028 PRR3P79522 188 aaKnown RBP9.45□□□□□ -0.9
TRIM28-205ENST00000595028 FABP9Q0Z7S8 132 aa9.45□□□□□ -0.9
TRIM28-205ENST00000595028 KIAA0087Q14695 138 aa9.45□□□□□ -0.9
TRIM28-205ENST00000595028 PAPPA-AS1Q5QFB9 102 aa9.45□□□□□ -0.9
TRIM28-205ENST00000595028 C10orf25Q5T742 122 aa9.45□□□□□ -0.9
TRIM28-205ENST00000595028 LINC01561Q8N1V8 128 aa9.45□□□□□ -0.9
TRIM28-205ENST00000595028 C6orf48Q9UBA6 75 aa9.44□□□□□ -0.9
TRIM28-205ENST00000595028 UNQ6190/PRO20217Q6UXQ8 127 aa9.43□□□□□ -0.9
TRIM28-205ENST00000595028 ERASQ7Z444 233 aa9.43□□□□□ -0.9
TRIM28-205ENST00000595028 LINC01549A6NIU2 74 aa9.42□□□□□ -0.9
TRIM28-205ENST00000595028 TLX1NBP0CAT3 122 aa9.42□□□□□ -0.9
TRIM28-205ENST00000595028 HERVK_113P63121 156 aa9.42□□□□□ -0.9
TRIM28-205ENST00000595028 SEC11AP67812 179 aa9.42□□□□□ -0.9
TRIM28-205ENST00000595028 FA2HQ7L5A8 372 aa9.42□□□□□ -0.9
TRIM28-205ENST00000595028 SCGB3A1Q96QR1 104 aa9.42□□□□□ -0.9
TRIM28-205ENST00000595028 SMCO4Q9NRQ5 59 aa9.42□□□□□ -0.9
TRIM28-205ENST00000595028 A0A1W2PNN7 141 aa9.41□□□□□ -0.9
TRIM28-205ENST00000595028 C9orf116Q5BN46 136 aaPredicted RBP9.41□□□□□ -0.9
TRIM28-205ENST00000595028 TRBV30A0A0K0K1B3 111 aa9.4□□□□□ -0.9
TRIM28-205ENST00000595028 C2orf82Q6UX34 121 aa9.4□□□□□ -0.9
TRIM28-205ENST00000595028 CBLN2Q8IUK8 224 aa9.4□□□□□ -0.9
TRIM28-205ENST00000595028 Q6ZRP5 223 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms